Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_332

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_330 and PfGW456L13_331 are separated by 114 nucleotidesPfGW456L13_331 and PfGW456L13_332 are separated by 30 nucleotidesPfGW456L13_332 and PfGW456L13_333 are separated by 293 nucleotides PfGW456L13_330 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 385,111 to 386,475 _330 PfGW456L13_331 - Outer membrane lipoprotein Blc, at 386,590 to 387,159 _331 PfGW456L13_332 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 387,190 to 387,444 _332 PfGW456L13_333 - Methyl-accepting chemotaxis protein, at 387,738 to 389,618 _333 Position (kb) 387 388Strain fitness (log2 ratio) -2 -1 0 1 2 3at 386.331 kb on + strand, within PfGW456L13_330at 386.332 kb on - strand, within PfGW456L13_330at 386.581 kb on + strandat 386.581 kb on + strandat 386.581 kb on + strandat 386.582 kb on - strandat 386.582 kb on - strandat 386.582 kb on - strandat 386.587 kb on + strandat 386.651 kb on + strand, within PfGW456L13_331at 386.651 kb on + strand, within PfGW456L13_331at 386.732 kb on + strand, within PfGW456L13_331at 386.732 kb on + strand, within PfGW456L13_331at 386.732 kb on + strand, within PfGW456L13_331at 386.732 kb on + strand, within PfGW456L13_331at 386.732 kb on + strand, within PfGW456L13_331at 386.732 kb on + strand, within PfGW456L13_331at 386.732 kb on + strand, within PfGW456L13_331at 386.733 kb on - strand, within PfGW456L13_331at 386.733 kb on - strand, within PfGW456L13_331at 386.733 kb on - strand, within PfGW456L13_331at 386.733 kb on - strand, within PfGW456L13_331at 386.733 kb on - strand, within PfGW456L13_331at 386.733 kb on - strand, within PfGW456L13_331at 386.768 kb on + strand, within PfGW456L13_331at 386.768 kb on + strand, within PfGW456L13_331at 386.768 kb on + strand, within PfGW456L13_331at 386.769 kb on - strand, within PfGW456L13_331at 386.769 kb on - strand, within PfGW456L13_331at 386.783 kb on + strandat 386.783 kb on + strand, within PfGW456L13_331at 386.783 kb on + strand, within PfGW456L13_331at 386.784 kb on - strand, within PfGW456L13_331at 386.784 kb on - strand, within PfGW456L13_331at 386.784 kb on - strand, within PfGW456L13_331at 386.784 kb on - strand, within PfGW456L13_331at 386.784 kb on - strand, within PfGW456L13_331at 386.885 kb on + strand, within PfGW456L13_331at 386.972 kb on + strand, within PfGW456L13_331at 386.972 kb on + strand, within PfGW456L13_331at 387.008 kb on + strand, within PfGW456L13_331at 387.008 kb on + strand, within PfGW456L13_331at 387.008 kb on + strand, within PfGW456L13_331at 387.008 kb on + strand, within PfGW456L13_331at 387.008 kb on + strand, within PfGW456L13_331at 387.008 kb on + strand, within PfGW456L13_331at 387.008 kb on + strand, within PfGW456L13_331at 387.009 kb on - strand, within PfGW456L13_331at 387.009 kb on - strand, within PfGW456L13_331at 387.018 kb on + strand, within PfGW456L13_331at 387.019 kb on - strand, within PfGW456L13_331at 387.032 kb on + strand, within PfGW456L13_331at 387.033 kb on - strand, within PfGW456L13_331at 387.067 kb on - strand, within PfGW456L13_331at 387.067 kb on - strand, within PfGW456L13_331at 387.160 kb on + strandat 387.161 kb on - strandat 387.192 kb on - strandat 387.192 kb on - strandat 387.249 kb on + strand, within PfGW456L13_332at 387.249 kb on + strand, within PfGW456L13_332at 387.369 kb on - strand, within PfGW456L13_332at 387.406 kb on + strand, within PfGW456L13_332at 387.495 kb on + strandat 387.495 kb on + strandat 387.495 kb on + strandat 387.496 kb on - strandat 387.496 kb on - strandat 387.496 kb on - strandat 387.496 kb on - strandat 387.496 kb on - strandat 387.496 kb on - strandat 387.496 kb on - strandat 387.496 kb on - strandat 387.535 kb on + strandat 387.535 kb on + strandat 387.536 kb on - strandat 387.539 kb on + strandat 387.624 kb on + strandat 387.650 kb on + strandat 387.650 kb on + strandat 387.651 kb on - strandat 387.651 kb on - strandat 387.651 kb on - strandat 387.651 kb on - strandat 387.698 kb on - strandat 387.716 kb on + strandat 387.717 kb on - strandat 387.757 kb on + strandat 387.758 kb on - strandat 387.758 kb on - strandat 387.758 kb on - strandat 387.758 kb on - strandat 387.819 kb on + strandat 388.029 kb on + strand, within PfGW456L13_333at 388.029 kb on + strand, within PfGW456L13_333at 388.090 kb on - strand, within PfGW456L13_333at 388.113 kb on + strand, within PfGW456L13_333at 388.113 kb on + strand, within PfGW456L13_333at 388.114 kb on - strand, within PfGW456L13_333at 388.114 kb on - strand, within PfGW456L13_333at 388.114 kb on - strand, within PfGW456L13_333at 388.127 kb on + strand, within PfGW456L13_333at 388.128 kb on - strand, within PfGW456L13_333at 388.128 kb on - strand, within PfGW456L13_333at 388.128 kb on - strand, within PfGW456L13_333at 388.128 kb on - strand, within PfGW456L13_333at 388.158 kb on + strand, within PfGW456L13_333at 388.158 kb on + strand, within PfGW456L13_333at 388.158 kb on + strand, within PfGW456L13_333at 388.158 kb on + strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.159 kb on - strand, within PfGW456L13_333at 388.355 kb on + strand, within PfGW456L13_333at 388.355 kb on + strand, within PfGW456L13_333at 388.355 kb on + strand, within PfGW456L13_333at 388.356 kb on - strand, within PfGW456L13_333at 388.356 kb on - strand, within PfGW456L13_333at 388.356 kb on - strand, within PfGW456L13_333at 388.356 kb on - strand, within PfGW456L13_333at 388.356 kb on - strand, within PfGW456L13_333at 388.387 kb on - strand, within PfGW456L13_333

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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386,331 + PfGW456L13_330 0.89 +0.1
386,332 - PfGW456L13_330 0.89 -1.1
386,581 + +1.6
386,581 + -1.3
386,581 + +0.9
386,582 - +0.2
386,582 - +2.5
386,582 - +0.5
386,587 + +0.0
386,651 + PfGW456L13_331 0.11 -0.5
386,651 + PfGW456L13_331 0.11 +1.4
386,732 + PfGW456L13_331 0.25 +1.1
386,732 + PfGW456L13_331 0.25 +0.3
386,732 + PfGW456L13_331 0.25 +0.2
386,732 + PfGW456L13_331 0.25 -0.3
386,732 + PfGW456L13_331 0.25 +0.7
386,732 + PfGW456L13_331 0.25 -0.1
386,732 + PfGW456L13_331 0.25 -0.5
386,733 - PfGW456L13_331 0.25 +0.7
386,733 - PfGW456L13_331 0.25 +0.2
386,733 - PfGW456L13_331 0.25 -0.0
386,733 - PfGW456L13_331 0.25 +2.1
386,733 - PfGW456L13_331 0.25 -0.7
386,733 - PfGW456L13_331 0.25 -2.7
386,768 + PfGW456L13_331 0.31 +0.3
386,768 + PfGW456L13_331 0.31 -0.1
386,768 + PfGW456L13_331 0.31 +0.1
386,769 - PfGW456L13_331 0.31 +0.2
386,769 - PfGW456L13_331 0.31 -1.3
386,783 + +1.1
386,783 + PfGW456L13_331 0.34 +1.6
386,783 + PfGW456L13_331 0.34 -0.4
386,784 - PfGW456L13_331 0.34 -1.4
386,784 - PfGW456L13_331 0.34 +1.1
386,784 - PfGW456L13_331 0.34 -1.1
386,784 - PfGW456L13_331 0.34 -1.1
386,784 - PfGW456L13_331 0.34 +1.4
386,885 + PfGW456L13_331 0.52 +0.6
386,972 + PfGW456L13_331 0.67 +1.1
386,972 + PfGW456L13_331 0.67 +0.1
387,008 + PfGW456L13_331 0.73 +1.1
387,008 + PfGW456L13_331 0.73 -0.5
387,008 + PfGW456L13_331 0.73 +0.2
387,008 + PfGW456L13_331 0.73 +1.1
387,008 + PfGW456L13_331 0.73 +0.5
387,008 + PfGW456L13_331 0.73 -0.0
387,008 + PfGW456L13_331 0.73 +0.8
387,009 - PfGW456L13_331 0.74 +0.4
387,009 - PfGW456L13_331 0.74 -0.6
387,018 + PfGW456L13_331 0.75 +0.3
387,019 - PfGW456L13_331 0.75 -0.8
387,032 + PfGW456L13_331 0.78 -1.3
387,033 - PfGW456L13_331 0.78 -0.4
387,067 - PfGW456L13_331 0.84 +0.4
387,067 - PfGW456L13_331 0.84 +0.2
387,160 + +0.8
387,161 - +0.0
387,192 - +0.9
387,192 - +1.0
387,249 + PfGW456L13_332 0.23 +0.1
387,249 + PfGW456L13_332 0.23 -0.3
387,369 - PfGW456L13_332 0.70 -0.9
387,406 + PfGW456L13_332 0.85 +0.3
387,495 + -0.7
387,495 + +0.2
387,495 + -0.5
387,496 - -1.8
387,496 - -0.1
387,496 - -0.8
387,496 - +1.2
387,496 - +0.8
387,496 - -0.0
387,496 - -0.1
387,496 - -1.0
387,535 + +0.9
387,535 + +0.3
387,536 - +0.2
387,539 + +0.4
387,624 + +2.0
387,650 + -0.6
387,650 + -1.1
387,651 - -0.3
387,651 - +0.1
387,651 - +0.2
387,651 - +0.9
387,698 - +0.2
387,716 + +0.9
387,717 - +3.5
387,757 + -0.1
387,758 - +0.4
387,758 - +1.2
387,758 - +0.8
387,758 - +0.6
387,819 + -0.6
388,029 + PfGW456L13_333 0.15 -1.8
388,029 + PfGW456L13_333 0.15 -0.4
388,090 - PfGW456L13_333 0.19 +0.2
388,113 + PfGW456L13_333 0.20 -0.6
388,113 + PfGW456L13_333 0.20 +0.5
388,114 - PfGW456L13_333 0.20 +0.8
388,114 - PfGW456L13_333 0.20 -0.7
388,114 - PfGW456L13_333 0.20 -1.3
388,127 + PfGW456L13_333 0.21 -0.4
388,128 - PfGW456L13_333 0.21 +0.8
388,128 - PfGW456L13_333 0.21 +0.9
388,128 - PfGW456L13_333 0.21 +0.6
388,128 - PfGW456L13_333 0.21 -0.6
388,158 + PfGW456L13_333 0.22 -0.8
388,158 + PfGW456L13_333 0.22 -0.4
388,158 + PfGW456L13_333 0.22 +0.2
388,158 + PfGW456L13_333 0.22 -0.0
388,159 - PfGW456L13_333 0.22 +0.1
388,159 - PfGW456L13_333 0.22 -1.9
388,159 - PfGW456L13_333 0.22 +1.1
388,159 - PfGW456L13_333 0.22 +1.3
388,159 - PfGW456L13_333 0.22 -0.5
388,159 - PfGW456L13_333 0.22 +1.1
388,159 - PfGW456L13_333 0.22 -0.2
388,159 - PfGW456L13_333 0.22 +1.8
388,355 + PfGW456L13_333 0.33 +1.1
388,355 + PfGW456L13_333 0.33 -1.3
388,355 + PfGW456L13_333 0.33 -0.8
388,356 - PfGW456L13_333 0.33 +0.8
388,356 - PfGW456L13_333 0.33 +0.6
388,356 - PfGW456L13_333 0.33 -0.7
388,356 - PfGW456L13_333 0.33 -1.8
388,356 - PfGW456L13_333 0.33 +0.5
388,387 - PfGW456L13_333 0.35 -0.1

Or see this region's nucleotide sequence