Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3301 and PfGW456L13_3302 overlap by 4 nucleotides PfGW456L13_3302 and PfGW456L13_3303 overlap by 8 nucleotides PfGW456L13_3303 and PfGW456L13_3304 overlap by 4 nucleotides
PfGW456L13_3301 - hypothetical protein PA3071, at 3,710,000 to 3,710,944
_3301
PfGW456L13_3302 - FIG00954674: hypothetical protein, at 3,710,941 to 3,711,435
_3302
PfGW456L13_3303 - BatA (Bacteroides aerotolerance operon), at 3,711,428 to 3,712,510
_3303
PfGW456L13_3304 - TPR domain protein in aerotolerance operon, at 3,712,507 to 3,714,240
_3304
Position (kb) 3711
3712
3713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3710.435 kb on + strand, within PfGW456L13_3301 at 3710.435 kb on + strand at 3710.436 kb on - strand, within PfGW456L13_3301 at 3710.436 kb on - strand, within PfGW456L13_3301 at 3710.730 kb on + strand, within PfGW456L13_3301 at 3710.730 kb on + strand, within PfGW456L13_3301 at 3710.730 kb on + strand, within PfGW456L13_3301 at 3710.730 kb on + strand, within PfGW456L13_3301 at 3710.731 kb on - strand, within PfGW456L13_3301 at 3710.731 kb on - strand, within PfGW456L13_3301 at 3710.909 kb on + strand at 3710.973 kb on - strand at 3711.075 kb on + strand at 3711.352 kb on + strand, within PfGW456L13_3302 at 3711.352 kb on + strand, within PfGW456L13_3302 at 3711.492 kb on + strand at 3711.492 kb on + strand at 3711.492 kb on + strand at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.615 kb on + strand, within PfGW456L13_3303 at 3711.864 kb on - strand, within PfGW456L13_3303 at 3711.864 kb on - strand, within PfGW456L13_3303 at 3712.229 kb on + strand, within PfGW456L13_3303 at 3712.229 kb on + strand, within PfGW456L13_3303 at 3712.230 kb on - strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.337 kb on + strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.338 kb on - strand, within PfGW456L13_3303 at 3712.681 kb on - strand, within PfGW456L13_3304 at 3712.921 kb on + strand, within PfGW456L13_3304 at 3712.922 kb on - strand, within PfGW456L13_3304
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 3,710,435 + PfGW456L13_3301 0.46 -3.0 3,710,435 + -0.3 3,710,436 - PfGW456L13_3301 0.46 -2.8 3,710,436 - PfGW456L13_3301 0.46 -2.7 3,710,730 + PfGW456L13_3301 0.77 -2.2 3,710,730 + PfGW456L13_3301 0.77 -2.5 3,710,730 + PfGW456L13_3301 0.77 -1.1 3,710,730 + PfGW456L13_3301 0.77 -3.6 3,710,731 - PfGW456L13_3301 0.77 -2.5 3,710,731 - PfGW456L13_3301 0.77 -1.8 3,710,909 + +2.4 3,710,973 - +0.1 3,711,075 + -0.9 3,711,352 + PfGW456L13_3302 0.83 -3.3 3,711,352 + PfGW456L13_3302 0.83 -1.3 3,711,492 + -1.9 3,711,492 + -1.3 3,711,492 + -2.9 3,711,615 + PfGW456L13_3303 0.17 -0.3 3,711,615 + PfGW456L13_3303 0.17 -3.3 3,711,615 + PfGW456L13_3303 0.17 -2.5 3,711,615 + PfGW456L13_3303 0.17 -2.7 3,711,615 + PfGW456L13_3303 0.17 -2.9 3,711,864 - PfGW456L13_3303 0.40 -2.6 3,711,864 - PfGW456L13_3303 0.40 -1.7 3,712,229 + PfGW456L13_3303 0.74 -2.8 3,712,229 + PfGW456L13_3303 0.74 -3.3 3,712,230 - PfGW456L13_3303 0.74 -1.3 3,712,337 + PfGW456L13_3303 0.84 -1.7 3,712,337 + PfGW456L13_3303 0.84 -1.9 3,712,337 + PfGW456L13_3303 0.84 -3.5 3,712,337 + PfGW456L13_3303 0.84 -2.3 3,712,337 + PfGW456L13_3303 0.84 -2.9 3,712,338 - PfGW456L13_3303 0.84 -3.3 3,712,338 - PfGW456L13_3303 0.84 -3.2 3,712,338 - PfGW456L13_3303 0.84 -2.9 3,712,338 - PfGW456L13_3303 0.84 -3.2 3,712,338 - PfGW456L13_3303 0.84 -2.1 3,712,338 - PfGW456L13_3303 0.84 -2.9 3,712,681 - PfGW456L13_3304 0.10 -3.4 3,712,921 + PfGW456L13_3304 0.24 -0.9 3,712,922 - PfGW456L13_3304 0.24 -1.3
Or see this region's nucleotide sequence