Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2885

Experiment: Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.5 mg/ml
3,213,498	-				-0.8
3,213,517	-				+1.0
3,213,534	-				+1.1
3,213,610	+				+1.1
3,213,611	-				-1.3
3,213,611	-				-1.6
3,213,656	+				+1.1
3,213,657	-				+0.0
3,213,657	-				-0.2
3,213,657	-				+0.2
3,213,659	+				+0.1
3,213,659	+				+0.4
3,213,660	-				-1.6
3,213,660	-				+0.7
3,213,716	+				-0.1
3,213,761	+				+1.4
3,213,762	-				+0.2
3,213,877	+		PfGW456L13_2884	0.14	-1.0
3,213,894	-		PfGW456L13_2884	0.17	-0.6
3,213,896	+		PfGW456L13_2884	0.18	-0.4
3,213,896	+		PfGW456L13_2884	0.18	+0.5
3,213,897	-		PfGW456L13_2884	0.18	+1.7
3,213,897	-		PfGW456L13_2884	0.18	-0.3
3,213,897	-		PfGW456L13_2884	0.18	+0.2
3,213,996	-		PfGW456L13_2884	0.39	-1.1
3,213,996	-		PfGW456L13_2884	0.39	+0.7
3,214,028	+		PfGW456L13_2884	0.45	-0.6
3,214,028	+				+0.1
3,214,028	+		PfGW456L13_2884	0.45	-0.5
3,214,028	+		PfGW456L13_2884	0.45	+0.5
3,214,028	+		PfGW456L13_2884	0.45	+0.4
3,214,028	+		PfGW456L13_2884	0.45	-0.2
3,214,028	+		PfGW456L13_2884	0.45	+0.0
3,214,028	+		PfGW456L13_2884	0.45	+0.3
3,214,028	+		PfGW456L13_2884	0.45	-0.1
3,214,028	+		PfGW456L13_2884	0.45	-0.4
3,214,028	+		PfGW456L13_2884	0.45	-2.1
3,214,028	+		PfGW456L13_2884	0.45	-0.3
3,214,028	+		PfGW456L13_2884	0.45	+1.5
3,214,029	-		PfGW456L13_2884	0.45	+1.7
3,214,029	-		PfGW456L13_2884	0.45	-0.3
3,214,029	-		PfGW456L13_2884	0.45	+0.4
3,214,029	-		PfGW456L13_2884	0.45	+0.7
3,214,029	-		PfGW456L13_2884	0.45	+0.0
3,214,029	-		PfGW456L13_2884	0.45	+1.5
3,214,029	-		PfGW456L13_2884	0.45	+0.7
3,214,029	-		PfGW456L13_2884	0.45	-2.0
3,214,029	-		PfGW456L13_2884	0.45	+0.7
3,214,029	-		PfGW456L13_2884	0.45	+0.6
3,214,029	-		PfGW456L13_2884	0.45	-0.3
3,214,029	-		PfGW456L13_2884	0.45	-2.3
3,214,029	-		PfGW456L13_2884	0.45	+1.2
3,214,029	-		PfGW456L13_2884	0.45	+0.3
3,214,029	-		PfGW456L13_2884	0.45	-0.7
3,214,029	-		PfGW456L13_2884	0.45	-0.3
3,214,176	-		PfGW456L13_2884	0.76	+0.6
3,214,300	+				-0.9
3,214,300	+				-1.6
3,214,391	+				-0.7
3,214,392	-				-2.3
3,214,392	-				-1.6
3,214,399	+				-1.1
3,214,399	+				-2.0
3,214,399	+				-2.0
3,214,399	+				-1.3
3,214,399	+				-1.3
3,214,399	+				-1.2
3,214,399	+				-1.9
3,214,399	+				+0.7
3,214,400	-				-1.0
3,214,400	-				-0.2
3,214,400	-				-1.5
3,214,400	-				-1.3
3,214,400	-				-1.6
3,214,400	-				-1.6
3,214,400	-				-1.6
3,214,402	+				-0.7
3,214,402	+				-1.0
3,214,403	-				-1.3
3,214,428	-				-0.3
3,214,428	-				-1.9
3,214,436	+				-1.6
3,214,437	-				-2.1
3,214,437	-				-3.1
3,214,471	+				-0.3
3,214,471	+				-2.0
3,214,591	+		PfGW456L13_2885	0.25	+1.7
3,214,686	+		PfGW456L13_2885	0.42	-1.5
3,214,738	+		PfGW456L13_2885	0.50	-1.3
3,214,738	+		PfGW456L13_2885	0.50	-1.6
3,214,738	+		PfGW456L13_2885	0.50	-1.1
3,214,739	-		PfGW456L13_2885	0.51	-3.2
3,214,739	-		PfGW456L13_2885	0.51	-1.6
3,214,739	-		PfGW456L13_2885	0.51	-1.6
3,214,755	+		PfGW456L13_2885	0.53	-1.6
3,214,755	+		PfGW456L13_2885	0.53	-2.1
3,214,755	+		PfGW456L13_2885	0.53	-2.8
3,214,755	+		PfGW456L13_2885	0.53	-1.1
3,214,755	+		PfGW456L13_2885	0.53	-1.9
3,214,756	-		PfGW456L13_2885	0.54	-1.9
3,214,756	-		PfGW456L13_2885	0.54	-1.9
3,214,756	-		PfGW456L13_2885	0.54	-0.6
3,214,756	-		PfGW456L13_2885	0.54	-1.9
3,214,756	-		PfGW456L13_2885	0.54	-2.3
3,214,882	+		PfGW456L13_2885	0.75	-1.0
3,214,882	+		PfGW456L13_2885	0.75	-1.3
3,214,882	+		PfGW456L13_2885	0.75	-1.3
3,214,882	+		PfGW456L13_2885	0.75	-1.6
3,214,883	-		PfGW456L13_2885	0.75	-1.3
3,214,883	-		PfGW456L13_2885	0.75	-3.2
3,214,933	-		PfGW456L13_2885	0.84	-1.5
3,214,933	-		PfGW456L13_2885	0.84	-0.9
3,215,123	+				-0.4
3,215,124	-				+0.7
3,215,166	-				+0.5
3,215,303	+		PfGW456L13_2886	0.15	-0.2
3,215,303	+		PfGW456L13_2886	0.15	-0.3
3,215,303	+		PfGW456L13_2886	0.15	+0.5
3,215,304	-		PfGW456L13_2886	0.15	+0.0
3,215,306	-		PfGW456L13_2886	0.15	-0.4
3,215,306	-		PfGW456L13_2886	0.15	-0.3
3,215,306	-		PfGW456L13_2886	0.15	+0.3
3,215,306	-		PfGW456L13_2886	0.15	-0.4
3,215,327	-		PfGW456L13_2886	0.16	-0.7
3,215,327	-		PfGW456L13_2886	0.16	-2.3
3,215,339	+				+0.7
3,215,339	+		PfGW456L13_2886	0.17	-0.8
3,215,340	-		PfGW456L13_2886	0.17	-2.1
3,215,340	-		PfGW456L13_2886	0.17	+0.1
3,215,340	-		PfGW456L13_2886	0.17	-0.5
3,215,411	+		PfGW456L13_2886	0.21	+0.0
3,215,411	+		PfGW456L13_2886	0.21	-0.9
3,215,412	-		PfGW456L13_2886	0.21	-1.3
3,215,501	+		PfGW456L13_2886	0.26	-1.0
3,215,501	+		PfGW456L13_2886	0.26	-0.6
3,215,501	+		PfGW456L13_2886	0.26	-1.6
3,215,501	+		PfGW456L13_2886	0.26	-0.3
3,215,501	+		PfGW456L13_2886	0.26	-2.3
3,215,501	+		PfGW456L13_2886	0.26	+0.4
3,215,502	-		PfGW456L13_2886	0.26	-2.6
3,215,502	-		PfGW456L13_2886	0.26	+0.4
3,215,502	-		PfGW456L13_2886	0.26	-1.3
3,215,502	-		PfGW456L13_2886	0.26	+0.2
3,215,504	+		PfGW456L13_2886	0.26	+0.1
3,215,504	+		PfGW456L13_2886	0.26	-1.5
3,215,505	-		PfGW456L13_2886	0.26	+0.2
3,215,505	-		PfGW456L13_2886	0.26	-0.4
3,215,535	-		PfGW456L13_2886	0.28	-2.1
3,215,586	+		PfGW456L13_2886	0.30	-0.4
3,215,588	+		PfGW456L13_2886	0.31	+0.4
3,215,589	-		PfGW456L13_2886	0.31	-0.1
3,215,731	-		PfGW456L13_2886	0.38	-0.6
3,215,925	+		PfGW456L13_2886	0.49	+0.2
3,215,933	+		PfGW456L13_2886	0.50	+0.5
3,215,933	+		PfGW456L13_2886	0.50	-0.2
3,215,933	+		PfGW456L13_2886	0.50	-2.9
3,215,934	-		PfGW456L13_2886	0.50	-1.4