Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2825 and PfGW456L13_2826 overlap by 9 nucleotides PfGW456L13_2826 and PfGW456L13_2827 overlap by 11 nucleotides
PfGW456L13_2825 - Cytosine deaminase (EC 3.5.4.1), at 3,132,360 to 3,133,556
_2825
PfGW456L13_2826 - hypothetical protein, at 3,133,548 to 3,133,703
_2826
PfGW456L13_2827 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 3,133,693 to 3,134,760
_2827
Position (kb)
3133
3134 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3132.823 kb on + strand, within PfGW456L13_2825 at 3132.823 kb on + strand, within PfGW456L13_2825 at 3132.871 kb on + strand, within PfGW456L13_2825 at 3132.872 kb on - strand, within PfGW456L13_2825 at 3132.872 kb on - strand, within PfGW456L13_2825 at 3133.312 kb on + strand, within PfGW456L13_2825 at 3133.312 kb on + strand, within PfGW456L13_2825 at 3133.312 kb on + strand, within PfGW456L13_2825 at 3133.313 kb on - strand, within PfGW456L13_2825 at 3133.380 kb on + strand, within PfGW456L13_2825 at 3133.380 kb on + strand, within PfGW456L13_2825 at 3133.380 kb on + strand, within PfGW456L13_2825 at 3133.381 kb on - strand, within PfGW456L13_2825 at 3133.381 kb on - strand, within PfGW456L13_2825 at 3133.619 kb on + strand, within PfGW456L13_2826 at 3133.620 kb on - strand, within PfGW456L13_2826 at 3133.620 kb on - strand, within PfGW456L13_2826 at 3133.994 kb on + strand, within PfGW456L13_2827 at 3134.000 kb on + strand, within PfGW456L13_2827 at 3134.000 kb on + strand, within PfGW456L13_2827 at 3134.000 kb on + strand, within PfGW456L13_2827 at 3134.000 kb on + strand, within PfGW456L13_2827 at 3134.001 kb on - strand, within PfGW456L13_2827 at 3134.001 kb on - strand, within PfGW456L13_2827 at 3134.001 kb on - strand, within PfGW456L13_2827 at 3134.001 kb on - strand, within PfGW456L13_2827 at 3134.001 kb on - strand, within PfGW456L13_2827 at 3134.001 kb on - strand, within PfGW456L13_2827 at 3134.001 kb on - strand, within PfGW456L13_2827 at 3134.037 kb on + strand, within PfGW456L13_2827 at 3134.037 kb on + strand, within PfGW456L13_2827 at 3134.037 kb on + strand, within PfGW456L13_2827 at 3134.038 kb on - strand, within PfGW456L13_2827 at 3134.108 kb on + strand, within PfGW456L13_2827 at 3134.108 kb on + strand, within PfGW456L13_2827 at 3134.108 kb on + strand, within PfGW456L13_2827 at 3134.108 kb on + strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.109 kb on - strand, within PfGW456L13_2827 at 3134.198 kb on + strand, within PfGW456L13_2827 at 3134.199 kb on - strand, within PfGW456L13_2827 at 3134.330 kb on + strand, within PfGW456L13_2827 at 3134.330 kb on + strand, within PfGW456L13_2827 at 3134.331 kb on - strand, within PfGW456L13_2827 at 3134.357 kb on + strand, within PfGW456L13_2827 at 3134.357 kb on + strand, within PfGW456L13_2827 at 3134.418 kb on - strand, within PfGW456L13_2827 at 3134.418 kb on - strand, within PfGW456L13_2827 at 3134.513 kb on + strand, within PfGW456L13_2827 at 3134.565 kb on - strand, within PfGW456L13_2827 at 3134.614 kb on + strand, within PfGW456L13_2827 at 3134.615 kb on - strand, within PfGW456L13_2827 at 3134.615 kb on - strand, within PfGW456L13_2827 at 3134.628 kb on - strand, within PfGW456L13_2827 at 3134.628 kb on - strand, within PfGW456L13_2827 at 3134.630 kb on + strand, within PfGW456L13_2827 at 3134.630 kb on + strand, within PfGW456L13_2827 at 3134.630 kb on + strand, within PfGW456L13_2827 at 3134.631 kb on - strand, within PfGW456L13_2827 at 3134.631 kb on - strand, within PfGW456L13_2827 at 3134.631 kb on - strand, within PfGW456L13_2827 at 3134.645 kb on + strand, within PfGW456L13_2827 at 3134.645 kb on + strand, within PfGW456L13_2827 at 3134.646 kb on - strand, within PfGW456L13_2827 at 3134.646 kb on - strand, within PfGW456L13_2827
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 3,132,823 + PfGW456L13_2825 0.39 -0.6 3,132,823 + PfGW456L13_2825 0.39 -0.0 3,132,871 + PfGW456L13_2825 0.43 -0.1 3,132,872 - PfGW456L13_2825 0.43 -0.4 3,132,872 - PfGW456L13_2825 0.43 +0.4 3,133,312 + PfGW456L13_2825 0.80 -0.9 3,133,312 + PfGW456L13_2825 0.80 +0.1 3,133,312 + PfGW456L13_2825 0.80 -1.0 3,133,313 - PfGW456L13_2825 0.80 +0.2 3,133,380 + PfGW456L13_2825 0.85 +0.5 3,133,380 + PfGW456L13_2825 0.85 -1.3 3,133,380 + PfGW456L13_2825 0.85 -0.6 3,133,381 - PfGW456L13_2825 0.85 +0.2 3,133,381 - PfGW456L13_2825 0.85 -0.5 3,133,619 + PfGW456L13_2826 0.46 +0.3 3,133,620 - PfGW456L13_2826 0.46 -0.8 3,133,620 - PfGW456L13_2826 0.46 -2.4 3,133,994 + PfGW456L13_2827 0.28 -1.8 3,134,000 + PfGW456L13_2827 0.29 +0.1 3,134,000 + PfGW456L13_2827 0.29 -0.6 3,134,000 + PfGW456L13_2827 0.29 -0.1 3,134,000 + PfGW456L13_2827 0.29 +2.1 3,134,001 - PfGW456L13_2827 0.29 +1.3 3,134,001 - PfGW456L13_2827 0.29 -0.2 3,134,001 - PfGW456L13_2827 0.29 -0.9 3,134,001 - PfGW456L13_2827 0.29 +0.8 3,134,001 - PfGW456L13_2827 0.29 -0.1 3,134,001 - PfGW456L13_2827 0.29 -1.2 3,134,001 - PfGW456L13_2827 0.29 +0.1 3,134,037 + PfGW456L13_2827 0.32 -1.1 3,134,037 + PfGW456L13_2827 0.32 +1.1 3,134,037 + PfGW456L13_2827 0.32 +0.5 3,134,038 - PfGW456L13_2827 0.32 -1.4 3,134,108 + PfGW456L13_2827 0.39 +1.5 3,134,108 + PfGW456L13_2827 0.39 -0.8 3,134,108 + PfGW456L13_2827 0.39 +0.3 3,134,108 + PfGW456L13_2827 0.39 -0.9 3,134,109 - PfGW456L13_2827 0.39 +0.4 3,134,109 - PfGW456L13_2827 0.39 +0.0 3,134,109 - PfGW456L13_2827 0.39 -0.7 3,134,109 - PfGW456L13_2827 0.39 +0.5 3,134,109 - PfGW456L13_2827 0.39 +2.2 3,134,109 - PfGW456L13_2827 0.39 -0.3 3,134,109 - PfGW456L13_2827 0.39 +0.2 3,134,109 - PfGW456L13_2827 0.39 +1.3 3,134,109 - PfGW456L13_2827 0.39 +1.3 3,134,109 - PfGW456L13_2827 0.39 -0.3 3,134,198 + PfGW456L13_2827 0.47 +1.1 3,134,199 - PfGW456L13_2827 0.47 +1.8 3,134,330 + PfGW456L13_2827 0.60 -0.3 3,134,330 + PfGW456L13_2827 0.60 +0.1 3,134,331 - PfGW456L13_2827 0.60 +0.5 3,134,357 + PfGW456L13_2827 0.62 +1.8 3,134,357 + PfGW456L13_2827 0.62 -0.4 3,134,418 - PfGW456L13_2827 0.68 -0.3 3,134,418 - PfGW456L13_2827 0.68 +0.6 3,134,513 + PfGW456L13_2827 0.77 +0.7 3,134,565 - PfGW456L13_2827 0.82 -0.1 3,134,614 + PfGW456L13_2827 0.86 -0.1 3,134,615 - PfGW456L13_2827 0.86 -0.0 3,134,615 - PfGW456L13_2827 0.86 -1.3 3,134,628 - PfGW456L13_2827 0.88 +0.6 3,134,628 - PfGW456L13_2827 0.88 +0.4 3,134,630 + PfGW456L13_2827 0.88 +0.2 3,134,630 + PfGW456L13_2827 0.88 +0.7 3,134,630 + PfGW456L13_2827 0.88 +0.9 3,134,631 - PfGW456L13_2827 0.88 -0.6 3,134,631 - PfGW456L13_2827 0.88 -0.4 3,134,631 - PfGW456L13_2827 0.88 -3.1 3,134,645 + PfGW456L13_2827 0.89 -1.6 3,134,645 + PfGW456L13_2827 0.89 -0.7 3,134,646 - PfGW456L13_2827 0.89 +0.1 3,134,646 - PfGW456L13_2827 0.89 +0.4
Or see this region's nucleotide sequence