Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_275 and PfGW456L13_276 are separated by 151 nucleotides PfGW456L13_276 and PfGW456L13_277 are separated by 31 nucleotides
PfGW456L13_275 - 3-dehydroquinate synthase (EC 4.2.3.4), at 322,813 to 323,913
_275
PfGW456L13_276 - Shikimate kinase I (EC 2.7.1.71), at 324,065 to 324,556
_276
PfGW456L13_277 - Type IV pilus biogenesis protein PilQ, at 324,588 to 326,657
_277
Position (kb) 324
325 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 323.144 kb on + strand, within PfGW456L13_275 at 323.270 kb on + strand, within PfGW456L13_275 at 323.804 kb on - strand at 323.944 kb on + strand at 323.964 kb on + strand at 324.067 kb on - strand at 324.095 kb on + strand at 324.095 kb on + strand at 324.096 kb on - strand at 324.096 kb on - strand at 324.096 kb on - strand at 324.107 kb on + strand at 324.107 kb on + strand at 324.288 kb on + strand, within PfGW456L13_276 at 324.289 kb on - strand, within PfGW456L13_276 at 324.623 kb on + strand at 324.624 kb on - strand at 324.639 kb on + strand at 324.639 kb on + strand at 324.640 kb on - strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.746 kb on + strand at 324.831 kb on + strand, within PfGW456L13_277 at 324.832 kb on - strand, within PfGW456L13_277 at 324.832 kb on - strand, within PfGW456L13_277 at 325.193 kb on + strand, within PfGW456L13_277 at 325.193 kb on + strand, within PfGW456L13_277 at 325.309 kb on + strand, within PfGW456L13_277 at 325.310 kb on - strand, within PfGW456L13_277 at 325.310 kb on - strand, within PfGW456L13_277 at 325.310 kb on - strand, within PfGW456L13_277 at 325.418 kb on - strand, within PfGW456L13_277 at 325.418 kb on - strand, within PfGW456L13_277 at 325.531 kb on + strand, within PfGW456L13_277 at 325.531 kb on + strand, within PfGW456L13_277 at 325.531 kb on + strand, within PfGW456L13_277 at 325.532 kb on - strand, within PfGW456L13_277
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 323,144 + PfGW456L13_275 0.30 -0.5 323,270 + PfGW456L13_275 0.42 -1.5 323,804 - -1.2 323,944 + -2.5 323,964 + -3.1 324,067 - +0.7 324,095 + -1.1 324,095 + -2.4 324,096 - +0.8 324,096 - +1.2 324,096 - +0.8 324,107 + -3.1 324,107 + -1.7 324,288 + PfGW456L13_276 0.45 -1.2 324,289 - PfGW456L13_276 0.46 -2.7 324,623 + -0.5 324,624 - +0.8 324,639 + -0.8 324,639 + +0.1 324,640 - +1.2 324,725 + +0.4 324,725 + -0.7 324,725 + +0.7 324,725 + +0.2 324,725 + -0.5 324,725 + +0.3 324,725 + +0.2 324,725 + -1.8 324,725 + +0.5 324,725 + -1.2 324,725 + -0.1 324,725 + -0.2 324,725 + -0.2 324,725 + +0.9 324,726 - +0.7 324,726 - +1.6 324,726 - +0.0 324,726 - -0.2 324,726 - +0.2 324,726 - -0.4 324,726 - +0.1 324,726 - +1.7 324,729 + -1.0 324,729 + -0.7 324,729 + -1.2 324,729 + -1.6 324,729 + -0.5 324,729 + -0.1 324,730 - +0.8 324,730 - +0.8 324,730 - +1.9 324,730 - +0.9 324,730 - +0.4 324,746 + -0.7 324,831 + PfGW456L13_277 0.12 +0.7 324,832 - PfGW456L13_277 0.12 -2.7 324,832 - PfGW456L13_277 0.12 -1.7 325,193 + PfGW456L13_277 0.29 -0.1 325,193 + PfGW456L13_277 0.29 +0.2 325,309 + PfGW456L13_277 0.35 +0.8 325,310 - PfGW456L13_277 0.35 +0.7 325,310 - PfGW456L13_277 0.35 +0.6 325,310 - PfGW456L13_277 0.35 +1.2 325,418 - PfGW456L13_277 0.40 +0.8 325,418 - PfGW456L13_277 0.40 +1.7 325,531 + PfGW456L13_277 0.46 -0.5 325,531 + PfGW456L13_277 0.46 -0.6 325,531 + PfGW456L13_277 0.46 +2.1 325,532 - PfGW456L13_277 0.46 +0.7
Or see this region's nucleotide sequence