Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2629 and PfGW456L13_2630 overlap by 4 nucleotides PfGW456L13_2630 and PfGW456L13_2631 are separated by 2 nucleotides PfGW456L13_2631 and PfGW456L13_2632 are separated by 72 nucleotides
PfGW456L13_2629 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 2,927,426 to 2,928,781
_2629
PfGW456L13_2630 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 2,928,778 to 2,929,275
_2630
PfGW456L13_2631 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 2,929,278 to 2,931,062
_2631
PfGW456L13_2632 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 2,931,135 to 2,931,809
_2632
Position (kb)
2929
2930
2931
2932 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2928.381 kb on + strand, within PfGW456L13_2629 at 2928.781 kb on + strand at 2928.782 kb on - strand at 2928.782 kb on - strand at 2928.782 kb on - strand at 2928.786 kb on - strand at 2928.986 kb on + strand, within PfGW456L13_2630 at 2929.052 kb on + strand, within PfGW456L13_2630 at 2929.322 kb on - strand at 2929.691 kb on - strand, within PfGW456L13_2631 at 2930.102 kb on - strand, within PfGW456L13_2631 at 2930.779 kb on + strand, within PfGW456L13_2631 at 2930.780 kb on - strand, within PfGW456L13_2631 at 2930.858 kb on - strand, within PfGW456L13_2631 at 2931.041 kb on - strand at 2931.066 kb on + strand at 2931.066 kb on + strand at 2931.071 kb on - strand at 2931.089 kb on - strand at 2931.089 kb on - strand at 2931.114 kb on + strand at 2931.115 kb on - strand at 2931.115 kb on - strand at 2931.220 kb on + strand, within PfGW456L13_2632 at 2931.383 kb on - strand, within PfGW456L13_2632 at 2931.604 kb on + strand, within PfGW456L13_2632 at 2931.628 kb on + strand, within PfGW456L13_2632 at 2931.723 kb on + strand, within PfGW456L13_2632 at 2931.889 kb on + strand at 2931.890 kb on - strand at 2931.893 kb on + strand at 2931.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 2,928,381 + PfGW456L13_2629 0.70 -0.3 2,928,781 + -0.9 2,928,782 - +0.7 2,928,782 - +0.4 2,928,782 - +0.5 2,928,786 - -1.9 2,928,986 + PfGW456L13_2630 0.42 +0.1 2,929,052 + PfGW456L13_2630 0.55 -1.9 2,929,322 - -2.6 2,929,691 - PfGW456L13_2631 0.23 -0.9 2,930,102 - PfGW456L13_2631 0.46 +0.1 2,930,779 + PfGW456L13_2631 0.84 +0.7 2,930,780 - PfGW456L13_2631 0.84 +0.1 2,930,858 - PfGW456L13_2631 0.89 -0.9 2,931,041 - -3.2 2,931,066 + -2.4 2,931,066 + +1.1 2,931,071 - +0.1 2,931,089 - -1.0 2,931,089 - +1.7 2,931,114 + -2.1 2,931,115 - +1.0 2,931,115 - +2.0 2,931,220 + PfGW456L13_2632 0.13 -1.4 2,931,383 - PfGW456L13_2632 0.37 +1.7 2,931,604 + PfGW456L13_2632 0.69 -1.9 2,931,628 + PfGW456L13_2632 0.73 +1.1 2,931,723 + PfGW456L13_2632 0.87 -0.9 2,931,889 + +1.1 2,931,890 - -1.6 2,931,893 + -0.9 2,931,920 - -0.9
Or see this region's nucleotide sequence