Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2101

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2099 and PfGW456L13_2100 are separated by 54 nucleotidesPfGW456L13_2100 and PfGW456L13_2101 are separated by 105 nucleotidesPfGW456L13_2101 and PfGW456L13_2102 are separated by 13 nucleotidesPfGW456L13_2102 and PfGW456L13_2103 are separated by 34 nucleotides PfGW456L13_2099 - Periplasmic serine proteases (ClpP class), at 2,306,127 to 2,307,116 _2099 PfGW456L13_2100 - FIG146278: Maf/YceF/YhdE family protein, at 2,307,171 to 2,307,749 _2100 PfGW456L13_2101 - COG1399 protein, clustered with ribosomal protein L32p, at 2,307,855 to 2,308,382 _2101 PfGW456L13_2102 - LSU ribosomal protein L32p, at 2,308,396 to 2,308,578 _2102 PfGW456L13_2103 - Phosphate:acyl-ACP acyltransferase PlsX, at 2,308,613 to 2,309,593 _2103 Position (kb) 2307 2308 2309Strain fitness (log2 ratio) -2 -1 0 1 2at 2307.095 kb on + strandat 2307.163 kb on - strandat 2307.317 kb on - strand, within PfGW456L13_2100at 2307.337 kb on + strand, within PfGW456L13_2100at 2307.337 kb on + strand, within PfGW456L13_2100at 2307.375 kb on + strand, within PfGW456L13_2100at 2307.375 kb on + strand, within PfGW456L13_2100at 2307.375 kb on + strand, within PfGW456L13_2100at 2307.376 kb on - strand, within PfGW456L13_2100at 2307.376 kb on - strand, within PfGW456L13_2100at 2307.555 kb on + strand, within PfGW456L13_2100at 2307.738 kb on + strandat 2307.738 kb on + strandat 2307.761 kb on + strandat 2307.779 kb on + strandat 2307.780 kb on - strandat 2308.576 kb on + strandat 2309.100 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.238 kb on - strand, within PfGW456L13_2103

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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2,307,095 + +1.4
2,307,163 - +1.4
2,307,317 - PfGW456L13_2100 0.25 +0.0
2,307,337 + PfGW456L13_2100 0.29 +0.2
2,307,337 + PfGW456L13_2100 0.29 +1.1
2,307,375 + PfGW456L13_2100 0.35 +0.2
2,307,375 + PfGW456L13_2100 0.35 -1.1
2,307,375 + PfGW456L13_2100 0.35 +0.5
2,307,376 - PfGW456L13_2100 0.35 +1.5
2,307,376 - PfGW456L13_2100 0.35 +0.2
2,307,555 + PfGW456L13_2100 0.66 +0.3
2,307,738 + -0.1
2,307,738 + +1.0
2,307,761 + +0.1
2,307,779 + -1.1
2,307,780 - -1.5
2,308,576 + +1.8
2,309,100 + PfGW456L13_2103 0.50 -0.8
2,309,207 + PfGW456L13_2103 0.61 -0.1
2,309,207 + PfGW456L13_2103 0.61 -2.2
2,309,207 + PfGW456L13_2103 0.61 -0.8
2,309,207 + PfGW456L13_2103 0.61 -0.6
2,309,208 - PfGW456L13_2103 0.61 +0.1
2,309,208 - PfGW456L13_2103 0.61 -0.2
2,309,208 - PfGW456L13_2103 0.61 +0.1
2,309,208 - PfGW456L13_2103 0.61 +2.1
2,309,208 - PfGW456L13_2103 0.61 -0.4
2,309,208 - PfGW456L13_2103 0.61 -1.5
2,309,238 - PfGW456L13_2103 0.64 +1.1

Or see this region's nucleotide sequence