Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2099 and PfGW456L13_2100 are separated by 54 nucleotides PfGW456L13_2100 and PfGW456L13_2101 are separated by 105 nucleotides PfGW456L13_2101 and PfGW456L13_2102 are separated by 13 nucleotides PfGW456L13_2102 and PfGW456L13_2103 are separated by 34 nucleotides
PfGW456L13_2099 - Periplasmic serine proteases (ClpP class), at 2,306,127 to 2,307,116
_2099
PfGW456L13_2100 - FIG146278: Maf/YceF/YhdE family protein, at 2,307,171 to 2,307,749
_2100
PfGW456L13_2101 - COG1399 protein, clustered with ribosomal protein L32p, at 2,307,855 to 2,308,382
_2101
PfGW456L13_2102 - LSU ribosomal protein L32p, at 2,308,396 to 2,308,578
_2102
PfGW456L13_2103 - Phosphate:acyl-ACP acyltransferase PlsX, at 2,308,613 to 2,309,593
_2103
Position (kb)
2307
2308
2309 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2307.095 kb on + strand at 2307.163 kb on - strand at 2307.317 kb on - strand, within PfGW456L13_2100 at 2307.337 kb on + strand, within PfGW456L13_2100 at 2307.337 kb on + strand, within PfGW456L13_2100 at 2307.375 kb on + strand, within PfGW456L13_2100 at 2307.375 kb on + strand, within PfGW456L13_2100 at 2307.375 kb on + strand, within PfGW456L13_2100 at 2307.376 kb on - strand, within PfGW456L13_2100 at 2307.376 kb on - strand, within PfGW456L13_2100 at 2307.555 kb on + strand, within PfGW456L13_2100 at 2307.738 kb on + strand at 2307.738 kb on + strand at 2307.761 kb on + strand at 2307.779 kb on + strand at 2307.780 kb on - strand at 2308.576 kb on + strand at 2309.100 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.207 kb on + strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.208 kb on - strand, within PfGW456L13_2103 at 2309.238 kb on - strand, within PfGW456L13_2103
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 2,307,095 + +1.4 2,307,163 - +1.4 2,307,317 - PfGW456L13_2100 0.25 +0.0 2,307,337 + PfGW456L13_2100 0.29 +0.2 2,307,337 + PfGW456L13_2100 0.29 +1.1 2,307,375 + PfGW456L13_2100 0.35 +0.2 2,307,375 + PfGW456L13_2100 0.35 -1.1 2,307,375 + PfGW456L13_2100 0.35 +0.5 2,307,376 - PfGW456L13_2100 0.35 +1.5 2,307,376 - PfGW456L13_2100 0.35 +0.2 2,307,555 + PfGW456L13_2100 0.66 +0.3 2,307,738 + -0.1 2,307,738 + +1.0 2,307,761 + +0.1 2,307,779 + -1.1 2,307,780 - -1.5 2,308,576 + +1.8 2,309,100 + PfGW456L13_2103 0.50 -0.8 2,309,207 + PfGW456L13_2103 0.61 -0.1 2,309,207 + PfGW456L13_2103 0.61 -2.2 2,309,207 + PfGW456L13_2103 0.61 -0.8 2,309,207 + PfGW456L13_2103 0.61 -0.6 2,309,208 - PfGW456L13_2103 0.61 +0.1 2,309,208 - PfGW456L13_2103 0.61 -0.2 2,309,208 - PfGW456L13_2103 0.61 +0.1 2,309,208 - PfGW456L13_2103 0.61 +2.1 2,309,208 - PfGW456L13_2103 0.61 -0.4 2,309,208 - PfGW456L13_2103 0.61 -1.5 2,309,238 - PfGW456L13_2103 0.64 +1.1
Or see this region's nucleotide sequence