Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1853 and PfGW456L13_1854 are separated by 304 nucleotides PfGW456L13_1854 and PfGW456L13_1855 overlap by 11 nucleotides PfGW456L13_1855 and PfGW456L13_1856 are separated by 14 nucleotides PfGW456L13_1856 and PfGW456L13_1857 overlap by 1 nucleotides
PfGW456L13_1853 - Holliday junction DNA helicase RuvB, at 2,040,198 to 2,041,259
_1853
PfGW456L13_1854 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 2,041,564 to 2,041,854
_1854
PfGW456L13_1855 - MotA/TolQ/ExbB proton channel family protein, at 2,041,844 to 2,042,539
_1855
PfGW456L13_1856 - Tol biopolymer transport system, TolR protein, at 2,042,554 to 2,043,015
_1856
PfGW456L13_1857 - TolA protein, at 2,043,015 to 2,044,094
_1857
Position (kb)
2041
2042
2043 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2040.927 kb on - strand, within PfGW456L13_1853 at 2041.114 kb on - strand, within PfGW456L13_1853 at 2041.131 kb on + strand, within PfGW456L13_1853 at 2041.131 kb on + strand, within PfGW456L13_1853 at 2041.132 kb on - strand, within PfGW456L13_1853 at 2041.132 kb on - strand, within PfGW456L13_1853 at 2041.176 kb on + strand at 2041.177 kb on - strand at 2041.192 kb on + strand at 2041.228 kb on + strand at 2041.229 kb on - strand at 2041.229 kb on - strand at 2041.229 kb on - strand at 2041.258 kb on - strand at 2041.258 kb on - strand at 2041.258 kb on - strand at 2041.261 kb on + strand at 2041.262 kb on - strand at 2041.292 kb on + strand at 2041.292 kb on + strand at 2041.292 kb on + strand at 2041.292 kb on + strand at 2041.293 kb on - strand at 2041.293 kb on - strand at 2041.293 kb on - strand at 2041.293 kb on - strand at 2041.293 kb on - strand at 2041.293 kb on - strand at 2041.293 kb on - strand at 2041.308 kb on + strand at 2041.308 kb on + strand at 2041.309 kb on - strand at 2041.309 kb on - strand at 2041.309 kb on - strand at 2041.374 kb on + strand at 2041.374 kb on + strand at 2041.374 kb on + strand at 2041.381 kb on + strand at 2041.381 kb on + strand at 2041.381 kb on + strand at 2041.381 kb on + strand at 2041.381 kb on + strand at 2041.386 kb on + strand at 2041.435 kb on + strand at 2041.438 kb on + strand at 2041.438 kb on + strand at 2041.468 kb on + strand at 2041.468 kb on + strand at 2041.468 kb on + strand at 2041.471 kb on + strand at 2041.471 kb on + strand at 2041.471 kb on + strand at 2041.471 kb on + strand at 2041.471 kb on + strand at 2041.476 kb on + strand at 2041.476 kb on + strand at 2041.476 kb on + strand at 2041.480 kb on + strand at 2041.480 kb on + strand at 2041.491 kb on + strand at 2041.631 kb on + strand, within PfGW456L13_1854 at 2041.643 kb on + strand, within PfGW456L13_1854 at 2041.784 kb on + strand, within PfGW456L13_1854 at 2041.818 kb on + strand, within PfGW456L13_1854 at 2041.818 kb on + strand, within PfGW456L13_1854 at 2042.537 kb on + strand at 2042.537 kb on + strand at 2042.537 kb on + strand at 2042.537 kb on + strand at 2043.051 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 2,040,927 - PfGW456L13_1853 0.69 -1.7 2,041,114 - PfGW456L13_1853 0.86 -0.9 2,041,131 + PfGW456L13_1853 0.88 -1.4 2,041,131 + PfGW456L13_1853 0.88 -0.3 2,041,132 - PfGW456L13_1853 0.88 -1.9 2,041,132 - PfGW456L13_1853 0.88 -3.6 2,041,176 + -0.4 2,041,177 - -1.4 2,041,192 + +0.0 2,041,228 + +0.1 2,041,229 - -3.1 2,041,229 - +1.9 2,041,229 - -1.3 2,041,258 - -4.1 2,041,258 - -2.6 2,041,258 - -0.8 2,041,261 + +1.0 2,041,262 - -1.8 2,041,292 + +0.7 2,041,292 + -0.6 2,041,292 + +1.6 2,041,292 + +0.4 2,041,293 - -1.2 2,041,293 - -1.2 2,041,293 - -0.7 2,041,293 - -2.1 2,041,293 - -1.2 2,041,293 - +0.0 2,041,293 - -1.7 2,041,308 + -0.1 2,041,308 + +3.5 2,041,309 - -1.4 2,041,309 - -1.1 2,041,309 - -1.7 2,041,374 + +0.5 2,041,374 + +0.9 2,041,374 + +0.2 2,041,381 + -0.3 2,041,381 + -0.5 2,041,381 + -1.2 2,041,381 + -0.1 2,041,381 + +0.0 2,041,386 + -0.3 2,041,435 + -2.3 2,041,438 + +0.9 2,041,438 + +0.9 2,041,468 + -2.4 2,041,468 + +0.6 2,041,468 + -0.9 2,041,471 + -3.3 2,041,471 + +0.7 2,041,471 + +0.4 2,041,471 + -1.9 2,041,471 + +0.2 2,041,476 + -0.1 2,041,476 + +1.1 2,041,476 + +0.8 2,041,480 + +1.1 2,041,480 + -0.1 2,041,491 + +0.4 2,041,631 + PfGW456L13_1854 0.23 +1.5 2,041,643 + PfGW456L13_1854 0.27 +1.8 2,041,784 + PfGW456L13_1854 0.76 -1.9 2,041,818 + PfGW456L13_1854 0.87 +1.5 2,041,818 + PfGW456L13_1854 0.87 -2.6 2,042,537 + +1.1 2,042,537 + -0.3 2,042,537 + +1.2 2,042,537 + +0.3 2,043,051 + +0.1
Or see this region's nucleotide sequence