Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_173 and PfGW456L13_174 are separated by 252 nucleotides PfGW456L13_174 and PfGW456L13_175 are separated by 175 nucleotides
PfGW456L13_173 - HAMP domain protein, at 197,775 to 199,292
_173
PfGW456L13_174 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 199,545 to 200,258
_174
PfGW456L13_175 - Topoisomerase IV subunit A (EC 5.99.1.-), at 200,434 to 202,701
_175
Position (kb)
199
200
201 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 199.290 kb on + strand at 199.291 kb on - strand at 199.291 kb on - strand at 199.475 kb on + strand at 199.475 kb on + strand at 199.476 kb on - strand at 199.476 kb on - strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.479 kb on + strand at 199.480 kb on - strand at 199.480 kb on - strand at 199.527 kb on + strand at 199.527 kb on + strand at 199.528 kb on - strand at 199.528 kb on - strand at 199.546 kb on + strand at 199.546 kb on + strand at 199.546 kb on + strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.547 kb on - strand at 199.572 kb on - strand at 199.572 kb on - strand at 199.578 kb on - strand at 199.578 kb on - strand at 199.617 kb on + strand, within PfGW456L13_174 at 199.618 kb on - strand, within PfGW456L13_174 at 199.763 kb on + strand, within PfGW456L13_174 at 199.942 kb on - strand, within PfGW456L13_174 at 200.087 kb on - strand, within PfGW456L13_174 at 200.115 kb on + strand, within PfGW456L13_174 at 200.154 kb on - strand, within PfGW456L13_174 at 200.170 kb on + strand, within PfGW456L13_174 at 200.171 kb on - strand, within PfGW456L13_174 at 200.171 kb on - strand, within PfGW456L13_174 at 200.234 kb on + strand at 200.235 kb on - strand at 200.303 kb on - strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.309 kb on + strand at 200.353 kb on - strand at 200.365 kb on + strand at 200.365 kb on + strand at 200.365 kb on + strand at 200.385 kb on + strand at 200.385 kb on + strand at 200.385 kb on + strand at 200.406 kb on - strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.427 kb on - strand at 200.427 kb on - strand at 200.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 199,290 + -0.1 199,291 - +0.7 199,291 - +0.8 199,475 + +0.3 199,475 + +0.5 199,476 - +1.1 199,476 - +0.9 199,479 + +0.6 199,479 + +0.4 199,479 + +0.6 199,479 + -0.6 199,479 + -0.3 199,480 - +0.2 199,480 - -0.8 199,527 + -0.2 199,527 + -0.7 199,528 - +1.3 199,528 - -1.0 199,546 + -0.0 199,546 + -0.5 199,546 + +1.4 199,547 - -0.2 199,547 - -0.2 199,547 - +0.1 199,547 - +0.3 199,547 - -0.7 199,547 - +1.9 199,572 - -0.9 199,572 - -0.2 199,578 - +0.7 199,578 - -1.4 199,617 + PfGW456L13_174 0.10 -0.8 199,618 - PfGW456L13_174 0.10 -1.0 199,763 + PfGW456L13_174 0.31 -0.2 199,942 - PfGW456L13_174 0.56 -0.0 200,087 - PfGW456L13_174 0.76 -0.5 200,115 + PfGW456L13_174 0.80 +0.9 200,154 - PfGW456L13_174 0.85 +0.9 200,170 + PfGW456L13_174 0.88 +0.6 200,171 - PfGW456L13_174 0.88 -1.2 200,171 - PfGW456L13_174 0.88 +0.3 200,234 + -0.6 200,235 - +0.2 200,303 - +0.6 200,309 + +0.8 200,309 + +1.2 200,309 + -0.3 200,309 + +0.6 200,309 + -0.5 200,353 - -0.8 200,365 + +0.1 200,365 + -0.8 200,365 + -0.8 200,385 + +0.9 200,385 + -1.5 200,385 + -0.4 200,406 - -0.5 200,426 + +0.5 200,426 + +1.6 200,426 + +1.2 200,426 + -0.3 200,426 + +0.7 200,426 + -0.0 200,427 - -1.4 200,427 - -2.5 200,435 + +0.9
Or see this region's nucleotide sequence