Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_174

Experiment: Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_173 and PfGW456L13_174 are separated by 252 nucleotidesPfGW456L13_174 and PfGW456L13_175 are separated by 175 nucleotides PfGW456L13_173 - HAMP domain protein, at 197,775 to 199,292 _173 PfGW456L13_174 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 199,545 to 200,258 _174 PfGW456L13_175 - Topoisomerase IV subunit A (EC 5.99.1.-), at 200,434 to 202,701 _175 Position (kb) 199 200 201Strain fitness (log2 ratio) -2 -1 0 1 2at 199.290 kb on + strandat 199.291 kb on - strandat 199.291 kb on - strandat 199.475 kb on + strandat 199.475 kb on + strandat 199.476 kb on - strandat 199.476 kb on - strandat 199.479 kb on + strandat 199.479 kb on + strandat 199.479 kb on + strandat 199.479 kb on + strandat 199.479 kb on + strandat 199.480 kb on - strandat 199.480 kb on - strandat 199.527 kb on + strandat 199.527 kb on + strandat 199.528 kb on - strandat 199.528 kb on - strandat 199.546 kb on + strandat 199.546 kb on + strandat 199.546 kb on + strandat 199.547 kb on - strandat 199.547 kb on - strandat 199.547 kb on - strandat 199.547 kb on - strandat 199.547 kb on - strandat 199.547 kb on - strandat 199.572 kb on - strandat 199.572 kb on - strandat 199.578 kb on - strandat 199.578 kb on - strandat 199.617 kb on + strand, within PfGW456L13_174at 199.618 kb on - strand, within PfGW456L13_174at 199.763 kb on + strand, within PfGW456L13_174at 199.942 kb on - strand, within PfGW456L13_174at 200.087 kb on - strand, within PfGW456L13_174at 200.115 kb on + strand, within PfGW456L13_174at 200.154 kb on - strand, within PfGW456L13_174at 200.170 kb on + strand, within PfGW456L13_174at 200.171 kb on - strand, within PfGW456L13_174at 200.171 kb on - strand, within PfGW456L13_174at 200.234 kb on + strandat 200.235 kb on - strandat 200.303 kb on - strandat 200.309 kb on + strandat 200.309 kb on + strandat 200.309 kb on + strandat 200.309 kb on + strandat 200.309 kb on + strandat 200.353 kb on - strandat 200.365 kb on + strandat 200.365 kb on + strandat 200.365 kb on + strandat 200.385 kb on + strandat 200.385 kb on + strandat 200.385 kb on + strandat 200.406 kb on - strandat 200.426 kb on + strandat 200.426 kb on + strandat 200.426 kb on + strandat 200.426 kb on + strandat 200.426 kb on + strandat 200.426 kb on + strandat 200.427 kb on - strandat 200.427 kb on - strandat 200.435 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
remove
199,290 + -0.1
199,291 - +0.7
199,291 - +0.8
199,475 + +0.3
199,475 + +0.5
199,476 - +1.1
199,476 - +0.9
199,479 + +0.6
199,479 + +0.4
199,479 + +0.6
199,479 + -0.6
199,479 + -0.3
199,480 - +0.2
199,480 - -0.8
199,527 + -0.2
199,527 + -0.7
199,528 - +1.3
199,528 - -1.0
199,546 + -0.0
199,546 + -0.5
199,546 + +1.4
199,547 - -0.2
199,547 - -0.2
199,547 - +0.1
199,547 - +0.3
199,547 - -0.7
199,547 - +1.9
199,572 - -0.9
199,572 - -0.2
199,578 - +0.7
199,578 - -1.4
199,617 + PfGW456L13_174 0.10 -0.8
199,618 - PfGW456L13_174 0.10 -1.0
199,763 + PfGW456L13_174 0.31 -0.2
199,942 - PfGW456L13_174 0.56 -0.0
200,087 - PfGW456L13_174 0.76 -0.5
200,115 + PfGW456L13_174 0.80 +0.9
200,154 - PfGW456L13_174 0.85 +0.9
200,170 + PfGW456L13_174 0.88 +0.6
200,171 - PfGW456L13_174 0.88 -1.2
200,171 - PfGW456L13_174 0.88 +0.3
200,234 + -0.6
200,235 - +0.2
200,303 - +0.6
200,309 + +0.8
200,309 + +1.2
200,309 + -0.3
200,309 + +0.6
200,309 + -0.5
200,353 - -0.8
200,365 + +0.1
200,365 + -0.8
200,365 + -0.8
200,385 + +0.9
200,385 + -1.5
200,385 + -0.4
200,406 - -0.5
200,426 + +0.5
200,426 + +1.6
200,426 + +1.2
200,426 + -0.3
200,426 + +0.7
200,426 + -0.0
200,427 - -1.4
200,427 - -2.5
200,435 + +0.9

Or see this region's nucleotide sequence