Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1585

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1583 and PfGW456L13_1584 overlap by 7 nucleotidesPfGW456L13_1584 and PfGW456L13_1585 overlap by 20 nucleotidesPfGW456L13_1585 and PfGW456L13_1586 are separated by 197 nucleotidesPfGW456L13_1586 and PfGW456L13_1587 are separated by 145 nucleotides PfGW456L13_1583 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 1,748,117 to 1,748,947 _1583 PfGW456L13_1584 - Molybdopterin biosynthesis protein MoeB, at 1,748,941 to 1,749,696 _1584 PfGW456L13_1585 - Glutamate racemase (EC 5.1.1.3), at 1,749,677 to 1,750,480 _1585 PfGW456L13_1586 - Lipid A 3-O-deacylase, at 1,750,678 to 1,751,121 _1586 PfGW456L13_1587 - FIG00955589: hypothetical protein, at 1,751,267 to 1,751,488 _1587 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1748.968 kb on + strandat 1749.035 kb on + strand, within PfGW456L13_1584at 1749.079 kb on + strand, within PfGW456L13_1584at 1749.079 kb on + strand, within PfGW456L13_1584at 1749.079 kb on + strand, within PfGW456L13_1584at 1749.454 kb on + strand, within PfGW456L13_1584at 1749.464 kb on + strand, within PfGW456L13_1584at 1750.447 kb on + strandat 1750.447 kb on + strandat 1750.447 kb on + strandat 1750.447 kb on + strandat 1750.447 kb on + strandat 1750.447 kb on + strandat 1750.447 kb on + strandat 1750.448 kb on - strandat 1750.448 kb on - strandat 1750.448 kb on - strandat 1750.448 kb on - strandat 1750.478 kb on + strandat 1750.478 kb on + strandat 1750.478 kb on + strandat 1750.478 kb on + strandat 1750.478 kb on + strandat 1750.478 kb on + strandat 1750.479 kb on - strandat 1750.479 kb on - strandat 1750.525 kb on - strandat 1750.525 kb on - strandat 1750.539 kb on + strandat 1750.542 kb on - strandat 1750.573 kb on + strandat 1750.720 kb on + strandat 1750.721 kb on - strandat 1750.804 kb on + strand, within PfGW456L13_1586at 1750.805 kb on - strand, within PfGW456L13_1586at 1750.805 kb on - strand, within PfGW456L13_1586at 1750.805 kb on - strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.806 kb on + strand, within PfGW456L13_1586at 1750.807 kb on - strandat 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.807 kb on - strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.810 kb on + strand, within PfGW456L13_1586at 1750.811 kb on - strand, within PfGW456L13_1586at 1750.811 kb on - strand, within PfGW456L13_1586at 1750.811 kb on - strand, within PfGW456L13_1586at 1750.870 kb on + strand, within PfGW456L13_1586at 1750.871 kb on - strand, within PfGW456L13_1586at 1750.900 kb on + strand, within PfGW456L13_1586at 1750.900 kb on + strand, within PfGW456L13_1586at 1750.900 kb on + strand, within PfGW456L13_1586at 1750.900 kb on + strand, within PfGW456L13_1586at 1750.900 kb on + strand, within PfGW456L13_1586at 1750.901 kb on - strand, within PfGW456L13_1586at 1750.901 kb on - strand, within PfGW456L13_1586at 1750.901 kb on - strand, within PfGW456L13_1586at 1750.901 kb on - strand, within PfGW456L13_1586at 1751.047 kb on + strand, within PfGW456L13_1586at 1751.047 kb on + strand, within PfGW456L13_1586at 1751.048 kb on - strand, within PfGW456L13_1586at 1751.084 kb on + strandat 1751.084 kb on + strandat 1751.085 kb on - strandat 1751.092 kb on + strandat 1751.092 kb on + strandat 1751.104 kb on + strandat 1751.104 kb on + strandat 1751.105 kb on - strandat 1751.105 kb on - strandat 1751.105 kb on - strandat 1751.119 kb on + strandat 1751.119 kb on + strandat 1751.119 kb on + strandat 1751.119 kb on + strandat 1751.119 kb on + strandat 1751.119 kb on + strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.120 kb on - strandat 1751.144 kb on + strandat 1751.144 kb on + strandat 1751.144 kb on + strandat 1751.145 kb on - strandat 1751.145 kb on - strandat 1751.358 kb on + strand, within PfGW456L13_1587at 1751.473 kb on + strandat 1751.473 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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1,748,968 + -0.7
1,749,035 + PfGW456L13_1584 0.12 +0.6
1,749,079 + PfGW456L13_1584 0.18 -0.4
1,749,079 + PfGW456L13_1584 0.18 -0.1
1,749,079 + PfGW456L13_1584 0.18 -1.0
1,749,454 + PfGW456L13_1584 0.68 -1.6
1,749,464 + PfGW456L13_1584 0.69 -1.2
1,750,447 + +1.5
1,750,447 + -0.4
1,750,447 + +0.7
1,750,447 + +1.1
1,750,447 + +0.3
1,750,447 + -0.3
1,750,447 + -0.1
1,750,448 - +0.6
1,750,448 - +0.3
1,750,448 - +1.0
1,750,448 - -1.2
1,750,478 + +0.6
1,750,478 + -0.0
1,750,478 + +0.8
1,750,478 + -0.6
1,750,478 + +1.1
1,750,478 + +0.4
1,750,479 - -0.0
1,750,479 - -1.3
1,750,525 - -0.2
1,750,525 - -0.4
1,750,539 + -0.9
1,750,542 - -0.6
1,750,573 + -0.2
1,750,720 + -0.3
1,750,721 - +0.8
1,750,804 + PfGW456L13_1586 0.28 -0.2
1,750,805 - PfGW456L13_1586 0.29 +0.2
1,750,805 - PfGW456L13_1586 0.29 +0.4
1,750,805 - PfGW456L13_1586 0.29 -1.6
1,750,806 + PfGW456L13_1586 0.29 -0.4
1,750,806 + PfGW456L13_1586 0.29 -0.4
1,750,806 + PfGW456L13_1586 0.29 -0.6
1,750,806 + PfGW456L13_1586 0.29 +2.0
1,750,806 + PfGW456L13_1586 0.29 -0.4
1,750,806 + PfGW456L13_1586 0.29 +0.0
1,750,806 + PfGW456L13_1586 0.29 -0.3
1,750,806 + PfGW456L13_1586 0.29 -1.3
1,750,806 + PfGW456L13_1586 0.29 +0.1
1,750,806 + PfGW456L13_1586 0.29 -0.5
1,750,806 + PfGW456L13_1586 0.29 -1.0
1,750,806 + PfGW456L13_1586 0.29 +0.6
1,750,807 - -1.3
1,750,807 - PfGW456L13_1586 0.29 +2.0
1,750,807 - PfGW456L13_1586 0.29 -0.0
1,750,807 - PfGW456L13_1586 0.29 -0.6
1,750,807 - PfGW456L13_1586 0.29 -0.3
1,750,807 - PfGW456L13_1586 0.29 -0.0
1,750,807 - PfGW456L13_1586 0.29 +0.1
1,750,807 - PfGW456L13_1586 0.29 +0.5
1,750,807 - PfGW456L13_1586 0.29 -0.7
1,750,807 - PfGW456L13_1586 0.29 +0.1
1,750,807 - PfGW456L13_1586 0.29 -0.4
1,750,810 + PfGW456L13_1586 0.30 -0.3
1,750,810 + PfGW456L13_1586 0.30 +1.4
1,750,810 + PfGW456L13_1586 0.30 -0.2
1,750,810 + PfGW456L13_1586 0.30 +0.1
1,750,810 + PfGW456L13_1586 0.30 +0.7
1,750,810 + PfGW456L13_1586 0.30 +0.2
1,750,810 + PfGW456L13_1586 0.30 +0.2
1,750,810 + PfGW456L13_1586 0.30 -1.0
1,750,811 - PfGW456L13_1586 0.30 +0.1
1,750,811 - PfGW456L13_1586 0.30 +0.4
1,750,811 - PfGW456L13_1586 0.30 -2.0
1,750,870 + PfGW456L13_1586 0.43 +1.0
1,750,871 - PfGW456L13_1586 0.43 -1.1
1,750,900 + PfGW456L13_1586 0.50 -0.4
1,750,900 + PfGW456L13_1586 0.50 -1.0
1,750,900 + PfGW456L13_1586 0.50 +0.3
1,750,900 + PfGW456L13_1586 0.50 +0.2
1,750,900 + PfGW456L13_1586 0.50 -0.1
1,750,901 - PfGW456L13_1586 0.50 +2.1
1,750,901 - PfGW456L13_1586 0.50 -0.8
1,750,901 - PfGW456L13_1586 0.50 -0.4
1,750,901 - PfGW456L13_1586 0.50 -0.3
1,751,047 + PfGW456L13_1586 0.83 -0.5
1,751,047 + PfGW456L13_1586 0.83 -0.1
1,751,048 - PfGW456L13_1586 0.83 -0.2
1,751,084 + -0.0
1,751,084 + +1.0
1,751,085 - +0.5
1,751,092 + +1.3
1,751,092 + -0.5
1,751,104 + +0.8
1,751,104 + -0.0
1,751,105 - -0.6
1,751,105 - +0.5
1,751,105 - -0.4
1,751,119 + -0.6
1,751,119 + -0.6
1,751,119 + -0.6
1,751,119 + +1.7
1,751,119 + +0.5
1,751,119 + -0.2
1,751,120 - +0.3
1,751,120 - -1.4
1,751,120 - +0.7
1,751,120 - +0.4
1,751,120 - -1.0
1,751,120 - -1.5
1,751,120 - -0.7
1,751,120 - +1.6
1,751,120 - +0.0
1,751,120 - -1.4
1,751,120 - +0.8
1,751,144 + +0.6
1,751,144 + -0.3
1,751,144 + -1.6
1,751,145 - -0.6
1,751,145 - +0.1
1,751,358 + PfGW456L13_1587 0.41 -0.5
1,751,473 + -0.5
1,751,473 + -1.7

Or see this region's nucleotide sequence