Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1020

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1018 and PfGW456L13_1019 overlap by 1 nucleotidesPfGW456L13_1019 and PfGW456L13_1020 are separated by 181 nucleotidesPfGW456L13_1020 and PfGW456L13_1021 are separated by 64 nucleotides PfGW456L13_1018 - Putative Holliday junction resolvase YggF, at 1,128,963 to 1,129,400 _1018 PfGW456L13_1019 - UPF0301 protein YqgE, at 1,129,400 to 1,129,972 _1019 PfGW456L13_1020 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,130,154 to 1,131,053 _1020 PfGW456L13_1021 - Glutathione synthetase (EC 6.3.2.3), at 1,131,118 to 1,132,071 _1021 Position (kb) 1130 1131 1132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1129.576 kb on - strand, within PfGW456L13_1019at 1129.755 kb on - strand, within PfGW456L13_1019at 1129.755 kb on - strand, within PfGW456L13_1019at 1129.755 kb on - strand, within PfGW456L13_1019at 1129.755 kb on - strand, within PfGW456L13_1019at 1129.755 kb on - strand, within PfGW456L13_1019at 1129.782 kb on - strand, within PfGW456L13_1019at 1129.782 kb on - strand, within PfGW456L13_1019at 1129.882 kb on - strand, within PfGW456L13_1019at 1129.882 kb on - strand, within PfGW456L13_1019at 1129.882 kb on - strand, within PfGW456L13_1019at 1129.882 kb on - strand, within PfGW456L13_1019at 1129.882 kb on - strand, within PfGW456L13_1019at 1129.882 kb on - strand, within PfGW456L13_1019at 1129.951 kb on - strandat 1129.951 kb on - strandat 1129.951 kb on - strandat 1129.980 kb on - strandat 1130.087 kb on + strandat 1130.087 kb on + strandat 1130.087 kb on + strandat 1130.087 kb on + strandat 1130.087 kb on + strandat 1130.087 kb on + strandat 1130.087 kb on + strandat 1130.088 kb on - strandat 1130.088 kb on - strandat 1130.088 kb on - strandat 1130.088 kb on - strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.093 kb on + strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.094 kb on - strandat 1130.095 kb on + strandat 1130.095 kb on + strandat 1130.095 kb on + strandat 1130.096 kb on - strandat 1130.171 kb on + strandat 1130.329 kb on + strand, within PfGW456L13_1020at 1130.329 kb on + strand, within PfGW456L13_1020at 1130.329 kb on + strand, within PfGW456L13_1020at 1130.329 kb on + strand, within PfGW456L13_1020at 1130.329 kb on + strand, within PfGW456L13_1020at 1130.329 kb on + strand, within PfGW456L13_1020at 1130.330 kb on - strand, within PfGW456L13_1020at 1130.330 kb on - strand, within PfGW456L13_1020at 1130.330 kb on - strand, within PfGW456L13_1020at 1130.330 kb on - strand, within PfGW456L13_1020at 1130.330 kb on - strand, within PfGW456L13_1020at 1130.330 kb on - strand, within PfGW456L13_1020at 1130.330 kb on - strand, within PfGW456L13_1020at 1130.377 kb on + strand, within PfGW456L13_1020at 1130.378 kb on - strand, within PfGW456L13_1020at 1130.378 kb on - strand, within PfGW456L13_1020at 1130.378 kb on - strand, within PfGW456L13_1020at 1130.407 kb on + strand, within PfGW456L13_1020at 1130.407 kb on + strand, within PfGW456L13_1020at 1130.455 kb on + strand, within PfGW456L13_1020at 1130.521 kb on + strand, within PfGW456L13_1020at 1130.521 kb on + strand, within PfGW456L13_1020at 1130.521 kb on + strand, within PfGW456L13_1020at 1130.617 kb on - strand, within PfGW456L13_1020at 1130.617 kb on - strand, within PfGW456L13_1020at 1130.745 kb on + strand, within PfGW456L13_1020at 1130.746 kb on - strand, within PfGW456L13_1020at 1130.746 kb on - strand, within PfGW456L13_1020at 1130.799 kb on - strand, within PfGW456L13_1020at 1130.981 kb on + strandat 1131.095 kb on + strandat 1131.095 kb on + strandat 1131.096 kb on - strandat 1131.186 kb on + strandat 1131.283 kb on + strand, within PfGW456L13_1021at 1131.284 kb on - strand, within PfGW456L13_1021at 1131.407 kb on + strand, within PfGW456L13_1021at 1131.771 kb on - strand, within PfGW456L13_1021at 1131.771 kb on - strand, within PfGW456L13_1021at 1131.771 kb on - strand, within PfGW456L13_1021at 1131.771 kb on - strand, within PfGW456L13_1021at 1131.779 kb on + strand, within PfGW456L13_1021at 1131.938 kb on + strand, within PfGW456L13_1021at 1131.939 kb on - strand, within PfGW456L13_1021at 1131.959 kb on + strand, within PfGW456L13_1021at 1131.959 kb on + strand, within PfGW456L13_1021at 1131.959 kb on + strand, within PfGW456L13_1021at 1131.959 kb on + strand, within PfGW456L13_1021at 1131.960 kb on - strand, within PfGW456L13_1021at 1131.960 kb on - strand, within PfGW456L13_1021at 1132.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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1,129,576 - PfGW456L13_1019 0.31 +0.2
1,129,755 - PfGW456L13_1019 0.62 -0.4
1,129,755 - PfGW456L13_1019 0.62 +0.9
1,129,755 - PfGW456L13_1019 0.62 +0.1
1,129,755 - PfGW456L13_1019 0.62 +0.7
1,129,755 - PfGW456L13_1019 0.62 +0.6
1,129,782 - PfGW456L13_1019 0.67 +0.1
1,129,782 - PfGW456L13_1019 0.67 -0.5
1,129,882 - PfGW456L13_1019 0.84 +0.6
1,129,882 - PfGW456L13_1019 0.84 +0.4
1,129,882 - PfGW456L13_1019 0.84 +0.2
1,129,882 - PfGW456L13_1019 0.84 -1.2
1,129,882 - PfGW456L13_1019 0.84 -0.2
1,129,882 - PfGW456L13_1019 0.84 -1.1
1,129,951 - -1.3
1,129,951 - -1.2
1,129,951 - -0.3
1,129,980 - -0.5
1,130,087 + -0.7
1,130,087 + -0.8
1,130,087 + +0.1
1,130,087 + -0.0
1,130,087 + +0.4
1,130,087 + -0.1
1,130,087 + +0.6
1,130,088 - +0.3
1,130,088 - -0.9
1,130,088 - +0.6
1,130,088 - -1.8
1,130,093 + -2.5
1,130,093 + -0.5
1,130,093 + -1.2
1,130,093 + +0.4
1,130,093 + -0.2
1,130,093 + -0.2
1,130,093 + +2.3
1,130,093 + -0.1
1,130,093 + +0.5
1,130,093 + -1.1
1,130,093 + +0.5
1,130,093 + +1.1
1,130,093 + -0.2
1,130,093 + +1.4
1,130,093 + -0.6
1,130,093 + +0.5
1,130,093 + -2.9
1,130,093 + +0.7
1,130,094 - +0.4
1,130,094 - -0.1
1,130,094 - +0.1
1,130,094 - +1.1
1,130,094 - +0.8
1,130,094 - +0.3
1,130,094 - +1.0
1,130,094 - -0.7
1,130,094 - -0.6
1,130,094 - -0.4
1,130,094 - +0.7
1,130,094 - -0.0
1,130,094 - -0.6
1,130,094 - +1.4
1,130,094 - +0.6
1,130,095 + +0.2
1,130,095 + -0.5
1,130,095 + -1.0
1,130,096 - +0.2
1,130,171 + -0.2
1,130,329 + PfGW456L13_1020 0.19 -1.7
1,130,329 + PfGW456L13_1020 0.19 -3.3
1,130,329 + PfGW456L13_1020 0.19 -0.1
1,130,329 + PfGW456L13_1020 0.19 -0.9
1,130,329 + PfGW456L13_1020 0.19 -3.8
1,130,329 + PfGW456L13_1020 0.19 -1.5
1,130,330 - PfGW456L13_1020 0.20 -2.1
1,130,330 - PfGW456L13_1020 0.20 -1.2
1,130,330 - PfGW456L13_1020 0.20 -2.6
1,130,330 - PfGW456L13_1020 0.20 -2.5
1,130,330 - PfGW456L13_1020 0.20 -1.5
1,130,330 - PfGW456L13_1020 0.20 -0.9
1,130,330 - PfGW456L13_1020 0.20 -0.6
1,130,377 + PfGW456L13_1020 0.25 -1.8
1,130,378 - PfGW456L13_1020 0.25 -0.1
1,130,378 - PfGW456L13_1020 0.25 -2.4
1,130,378 - PfGW456L13_1020 0.25 -1.2
1,130,407 + PfGW456L13_1020 0.28 -4.0
1,130,407 + PfGW456L13_1020 0.28 -2.3
1,130,455 + PfGW456L13_1020 0.33 -3.2
1,130,521 + PfGW456L13_1020 0.41 -1.1
1,130,521 + PfGW456L13_1020 0.41 -1.6
1,130,521 + PfGW456L13_1020 0.41 -2.9
1,130,617 - PfGW456L13_1020 0.51 -2.2
1,130,617 - PfGW456L13_1020 0.51 -1.9
1,130,745 + PfGW456L13_1020 0.66 -3.3
1,130,746 - PfGW456L13_1020 0.66 -2.6
1,130,746 - PfGW456L13_1020 0.66 -2.5
1,130,799 - PfGW456L13_1020 0.72 +1.1
1,130,981 + -1.3
1,131,095 + -1.2
1,131,095 + +1.7
1,131,096 - +0.1
1,131,186 + -2.9
1,131,283 + PfGW456L13_1021 0.17 -0.2
1,131,284 - PfGW456L13_1021 0.17 -0.6
1,131,407 + PfGW456L13_1021 0.30 +2.1
1,131,771 - PfGW456L13_1021 0.68 -2.1
1,131,771 - PfGW456L13_1021 0.68 -0.7
1,131,771 - PfGW456L13_1021 0.68 -1.7
1,131,771 - PfGW456L13_1021 0.68 -2.8
1,131,779 + PfGW456L13_1021 0.69 -2.3
1,131,938 + PfGW456L13_1021 0.86 -2.0
1,131,939 - PfGW456L13_1021 0.86 -1.5
1,131,959 + PfGW456L13_1021 0.88 -0.1
1,131,959 + PfGW456L13_1021 0.88 -0.6
1,131,959 + PfGW456L13_1021 0.88 -1.3
1,131,959 + PfGW456L13_1021 0.88 +0.3
1,131,960 - PfGW456L13_1021 0.88 +1.5
1,131,960 - PfGW456L13_1021 0.88 -3.1
1,132,021 - -0.8

Or see this region's nucleotide sequence