Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0792

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0791 and Echvi_0792 are separated by 121 nucleotidesEchvi_0792 and Echvi_0793 are separated by 277 nucleotides Echvi_0791: Echvi_0791 - Zn-dependent dipeptidase, microsomal dipeptidase homolog, at 902,365 to 903,618 _0791 Echvi_0792: Echvi_0792 - Aminopeptidase N, at 903,740 to 905,365 _0792 Echvi_0793: Echvi_0793 - hypothetical protein, at 905,643 to 907,007 _0793 Position (kb) 903 904 905 906Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 902.780 kb on - strand, within Echvi_0791at 902.874 kb on + strand, within Echvi_0791at 902.879 kb on + strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.880 kb on - strand, within Echvi_0791at 902.884 kb on + strand, within Echvi_0791at 902.884 kb on + strand, within Echvi_0791at 902.885 kb on - strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.908 kb on + strand, within Echvi_0791at 902.911 kb on - strand, within Echvi_0791at 902.988 kb on + strand, within Echvi_0791at 902.989 kb on - strand, within Echvi_0791at 903.071 kb on - strand, within Echvi_0791at 903.087 kb on + strand, within Echvi_0791at 903.088 kb on - strand, within Echvi_0791at 903.131 kb on - strand, within Echvi_0791at 903.131 kb on - strand, within Echvi_0791at 903.132 kb on + strand, within Echvi_0791at 903.133 kb on - strand, within Echvi_0791at 903.133 kb on - strand, within Echvi_0791at 903.154 kb on - strand, within Echvi_0791at 903.219 kb on + strand, within Echvi_0791at 903.219 kb on + strand, within Echvi_0791at 903.239 kb on - strand, within Echvi_0791at 903.239 kb on - strand, within Echvi_0791at 903.241 kb on - strand, within Echvi_0791at 903.241 kb on - strand, within Echvi_0791at 903.241 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.300 kb on - strand, within Echvi_0791at 903.328 kb on + strand, within Echvi_0791at 903.329 kb on - strand, within Echvi_0791at 903.329 kb on - strand, within Echvi_0791at 903.480 kb on + strand, within Echvi_0791at 903.496 kb on + strandat 903.496 kb on + strandat 903.501 kb on + strandat 903.502 kb on - strandat 903.502 kb on - strandat 903.533 kb on - strandat 903.565 kb on - strandat 903.665 kb on + strandat 903.689 kb on + strandat 903.701 kb on + strandat 903.701 kb on + strandat 903.741 kb on + strandat 903.756 kb on + strandat 903.773 kb on + strandat 903.773 kb on + strandat 903.773 kb on + strandat 903.774 kb on - strandat 903.835 kb on + strandat 903.898 kb on - strandat 903.948 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.954 kb on + strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 903.955 kb on - strand, within Echvi_0792at 904.038 kb on + strand, within Echvi_0792at 904.038 kb on + strand, within Echvi_0792at 904.039 kb on - strand, within Echvi_0792at 904.042 kb on + strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.043 kb on - strand, within Echvi_0792at 904.058 kb on + strand, within Echvi_0792at 904.058 kb on + strand, within Echvi_0792at 904.139 kb on - strand, within Echvi_0792at 904.140 kb on + strand, within Echvi_0792at 904.155 kb on + strand, within Echvi_0792at 904.155 kb on + strand, within Echvi_0792at 904.155 kb on + strand, within Echvi_0792at 904.156 kb on - strand, within Echvi_0792at 904.156 kb on - strand, within Echvi_0792at 904.156 kb on - strand, within Echvi_0792at 904.269 kb on + strand, within Echvi_0792at 904.270 kb on - strand, within Echvi_0792at 904.270 kb on - strand, within Echvi_0792at 904.272 kb on + strand, within Echvi_0792at 904.273 kb on - strand, within Echvi_0792at 904.279 kb on + strand, within Echvi_0792at 904.279 kb on + strand, within Echvi_0792at 904.280 kb on - strand, within Echvi_0792at 904.342 kb on + strand, within Echvi_0792at 904.343 kb on - strand, within Echvi_0792at 904.376 kb on + strand, within Echvi_0792at 904.377 kb on - strand, within Echvi_0792at 904.403 kb on + strand, within Echvi_0792at 904.408 kb on + strand, within Echvi_0792at 904.409 kb on - strand, within Echvi_0792at 904.413 kb on + strand, within Echvi_0792at 904.464 kb on + strand, within Echvi_0792at 904.464 kb on + strand, within Echvi_0792at 904.464 kb on + strand, within Echvi_0792at 904.465 kb on - strand, within Echvi_0792at 904.518 kb on + strand, within Echvi_0792at 904.518 kb on + strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.519 kb on - strand, within Echvi_0792at 904.540 kb on + strand, within Echvi_0792at 904.540 kb on + strand, within Echvi_0792at 904.540 kb on + strand, within Echvi_0792at 904.618 kb on + strand, within Echvi_0792at 904.626 kb on - strand, within Echvi_0792at 904.635 kb on + strand, within Echvi_0792at 904.636 kb on - strand, within Echvi_0792at 904.684 kb on - strand, within Echvi_0792at 904.684 kb on - strand, within Echvi_0792at 904.688 kb on - strand, within Echvi_0792at 904.719 kb on + strand, within Echvi_0792at 904.719 kb on + strand, within Echvi_0792at 904.719 kb on + strand, within Echvi_0792at 904.725 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.793 kb on + strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.794 kb on - strand, within Echvi_0792at 904.795 kb on + strand, within Echvi_0792at 904.798 kb on - strand, within Echvi_0792at 904.849 kb on + strand, within Echvi_0792at 904.969 kb on + strand, within Echvi_0792at 904.970 kb on - strand, within Echvi_0792at 904.971 kb on + strandat 904.971 kb on + strand, within Echvi_0792at 904.974 kb on + strand, within Echvi_0792at 904.975 kb on - strand, within Echvi_0792at 905.007 kb on + strand, within Echvi_0792at 905.007 kb on + strand, within Echvi_0792at 905.194 kb on - strand, within Echvi_0792at 905.194 kb on - strand, within Echvi_0792at 905.293 kb on + strandat 905.316 kb on + strandat 905.338 kb on + strandat 905.338 kb on + strandat 905.401 kb on - strandat 905.408 kb on + strandat 905.413 kb on - strandat 905.420 kb on - strandat 905.427 kb on + strandat 905.428 kb on - strandat 905.429 kb on + strandat 905.430 kb on - strandat 905.678 kb on - strandat 905.682 kb on + strandat 905.683 kb on - strandat 905.810 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.812 kb on + strand, within Echvi_0793at 905.813 kb on - strand, within Echvi_0793at 905.852 kb on + strand, within Echvi_0793at 905.853 kb on - strand, within Echvi_0793at 905.864 kb on - strand, within Echvi_0793at 905.899 kb on - strand, within Echvi_0793at 905.899 kb on - strand, within Echvi_0793at 905.899 kb on - strand, within Echvi_0793at 905.907 kb on + strand, within Echvi_0793at 905.907 kb on + strand, within Echvi_0793at 905.908 kb on - strand, within Echvi_0793at 905.930 kb on - strand, within Echvi_0793at 905.930 kb on - strand, within Echvi_0793at 906.057 kb on + strand, within Echvi_0793at 906.058 kb on - strand, within Echvi_0793at 906.067 kb on + strand, within Echvi_0793at 906.068 kb on - strand, within Echvi_0793at 906.080 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.091 kb on - strand, within Echvi_0793at 906.091 kb on - strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.138 kb on + strand, within Echvi_0793at 906.139 kb on - strand, within Echvi_0793at 906.171 kb on + strand, within Echvi_0793at 906.172 kb on - strand, within Echvi_0793at 906.172 kb on - strand, within Echvi_0793at 906.174 kb on + strand, within Echvi_0793at 906.175 kb on - strand, within Echvi_0793at 906.175 kb on - strand, within Echvi_0793at 906.178 kb on + strand, within Echvi_0793at 906.303 kb on + strand, within Echvi_0793at 906.304 kb on - strand, within Echvi_0793at 906.308 kb on + strand, within Echvi_0793at 906.324 kb on + strand, within Echvi_0793at 906.324 kb on + strand, within Echvi_0793at 906.325 kb on - strand, within Echvi_0793at 906.339 kb on - strand, within Echvi_0793at 906.339 kb on - strand, within Echvi_0793at 906.350 kb on + strand, within Echvi_0793at 906.351 kb on - strand, within Echvi_0793at 906.351 kb on - strand, within Echvi_0793

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
902,780 - Echvi_0791 0.33 -0.0
902,874 + Echvi_0791 0.41 +0.1
902,879 + Echvi_0791 0.41 -0.1
902,880 - Echvi_0791 0.41 -0.5
902,880 - Echvi_0791 0.41 -0.0
902,880 - Echvi_0791 0.41 +0.6
902,880 - Echvi_0791 0.41 +0.6
902,884 + Echvi_0791 0.41 -0.4
902,884 + Echvi_0791 0.41 -0.7
902,885 - Echvi_0791 0.41 +0.2
902,908 + Echvi_0791 0.43 +0.9
902,908 + Echvi_0791 0.43 -2.6
902,908 + Echvi_0791 0.43 -0.3
902,911 - Echvi_0791 0.44 +2.3
902,988 + Echvi_0791 0.50 +0.1
902,989 - Echvi_0791 0.50 -1.0
903,071 - Echvi_0791 0.56 -0.5
903,087 + Echvi_0791 0.58 -1.0
903,088 - Echvi_0791 0.58 +1.6
903,131 - Echvi_0791 0.61 -0.7
903,131 - Echvi_0791 0.61 -2.2
903,132 + Echvi_0791 0.61 -0.5
903,133 - Echvi_0791 0.61 +0.3
903,133 - Echvi_0791 0.61 -0.0
903,154 - Echvi_0791 0.63 -1.1
903,219 + Echvi_0791 0.68 +1.0
903,219 + Echvi_0791 0.68 +0.3
903,239 - Echvi_0791 0.70 +0.6
903,239 - Echvi_0791 0.70 -0.1
903,241 - Echvi_0791 0.70 -0.2
903,241 - Echvi_0791 0.70 -0.0
903,241 - Echvi_0791 0.70 +1.5
903,300 - Echvi_0791 0.75 +0.6
903,300 - Echvi_0791 0.75 -0.8
903,300 - Echvi_0791 0.75 +0.8
903,300 - Echvi_0791 0.75 +0.3
903,328 + Echvi_0791 0.77 +0.1
903,329 - Echvi_0791 0.77 -0.2
903,329 - Echvi_0791 0.77 +0.6
903,480 + Echvi_0791 0.89 +0.1
903,496 + -0.4
903,496 + +0.4
903,501 + -0.9
903,502 - -0.6
903,502 - +0.0
903,533 - -0.1
903,565 - -0.7
903,665 + -0.7
903,689 + +1.1
903,701 + +0.4
903,701 + +0.5
903,741 + +0.1
903,756 + +1.0
903,773 + -1.7
903,773 + -0.3
903,773 + -1.8
903,774 - -0.8
903,835 + -0.7
903,898 - +0.3
903,948 + Echvi_0792 0.13 +0.3
903,954 + Echvi_0792 0.13 -1.3
903,954 + Echvi_0792 0.13 -0.5
903,954 + Echvi_0792 0.13 +1.3
903,954 + Echvi_0792 0.13 +0.8
903,954 + Echvi_0792 0.13 +0.1
903,954 + Echvi_0792 0.13 +1.3
903,954 + Echvi_0792 0.13 -2.7
903,954 + Echvi_0792 0.13 -0.2
903,954 + Echvi_0792 0.13 +1.0
903,955 - Echvi_0792 0.13 +0.5
903,955 - Echvi_0792 0.13 -0.5
903,955 - Echvi_0792 0.13 -0.2
903,955 - Echvi_0792 0.13 +0.6
904,038 + Echvi_0792 0.18 -0.7
904,038 + Echvi_0792 0.18 +0.8
904,039 - Echvi_0792 0.18 +2.1
904,042 + Echvi_0792 0.19 -2.3
904,043 - Echvi_0792 0.19 +0.6
904,043 - Echvi_0792 0.19 -0.3
904,043 - Echvi_0792 0.19 -0.7
904,043 - Echvi_0792 0.19 +0.1
904,058 + Echvi_0792 0.20 +0.2
904,058 + Echvi_0792 0.20 -1.1
904,139 - Echvi_0792 0.25 -0.1
904,140 + Echvi_0792 0.25 +0.1
904,155 + Echvi_0792 0.26 -0.7
904,155 + Echvi_0792 0.26 +0.2
904,155 + Echvi_0792 0.26 +0.7
904,156 - Echvi_0792 0.26 +0.7
904,156 - Echvi_0792 0.26 +0.8
904,156 - Echvi_0792 0.26 +0.7
904,269 + Echvi_0792 0.33 +0.3
904,270 - Echvi_0792 0.33 -0.3
904,270 - Echvi_0792 0.33 +0.1
904,272 + Echvi_0792 0.33 -0.4
904,273 - Echvi_0792 0.33 -0.3
904,279 + Echvi_0792 0.33 +0.0
904,279 + Echvi_0792 0.33 +2.7
904,280 - Echvi_0792 0.33 +1.5
904,342 + Echvi_0792 0.37 +1.1
904,343 - Echvi_0792 0.37 +0.1
904,376 + Echvi_0792 0.39 -0.7
904,377 - Echvi_0792 0.39 -1.3
904,403 + Echvi_0792 0.41 +1.4
904,408 + Echvi_0792 0.41 +0.2
904,409 - Echvi_0792 0.41 -0.7
904,413 + Echvi_0792 0.41 -0.2
904,464 + Echvi_0792 0.45 -0.4
904,464 + Echvi_0792 0.45 -0.3
904,464 + Echvi_0792 0.45 +0.4
904,465 - Echvi_0792 0.45 +0.3
904,518 + Echvi_0792 0.48 -0.1
904,518 + Echvi_0792 0.48 +0.6
904,519 - Echvi_0792 0.48 -0.6
904,519 - Echvi_0792 0.48 +0.6
904,519 - Echvi_0792 0.48 +0.3
904,519 - Echvi_0792 0.48 +0.2
904,540 + Echvi_0792 0.49 +0.3
904,540 + Echvi_0792 0.49 +1.4
904,540 + Echvi_0792 0.49 -2.0
904,618 + Echvi_0792 0.54 +0.7
904,626 - Echvi_0792 0.54 -1.4
904,635 + Echvi_0792 0.55 +1.0
904,636 - Echvi_0792 0.55 +1.5
904,684 - Echvi_0792 0.58 +1.3
904,684 - Echvi_0792 0.58 +0.1
904,688 - Echvi_0792 0.58 -0.4
904,719 + Echvi_0792 0.60 +1.4
904,719 + Echvi_0792 0.60 -1.2
904,719 + Echvi_0792 0.60 -1.1
904,725 + Echvi_0792 0.61 -0.1
904,793 + Echvi_0792 0.65 -0.4
904,793 + Echvi_0792 0.65 +2.1
904,793 + Echvi_0792 0.65 +1.1
904,793 + Echvi_0792 0.65 +0.2
904,793 + Echvi_0792 0.65 +0.0
904,794 - Echvi_0792 0.65 +0.8
904,794 - Echvi_0792 0.65 -0.4
904,794 - Echvi_0792 0.65 -1.1
904,794 - Echvi_0792 0.65 +0.5
904,794 - Echvi_0792 0.65 -1.0
904,794 - Echvi_0792 0.65 -0.8
904,794 - Echvi_0792 0.65 +0.3
904,795 + Echvi_0792 0.65 -0.5
904,798 - Echvi_0792 0.65 +0.5
904,849 + Echvi_0792 0.68 -0.7
904,969 + Echvi_0792 0.76 +1.1
904,970 - Echvi_0792 0.76 -0.0
904,971 + +0.6
904,971 + Echvi_0792 0.76 +1.1
904,974 + Echvi_0792 0.76 +0.9
904,975 - Echvi_0792 0.76 -2.4
905,007 + Echvi_0792 0.78 +0.2
905,007 + Echvi_0792 0.78 +1.4
905,194 - Echvi_0792 0.89 +2.1
905,194 - Echvi_0792 0.89 -1.2
905,293 + -0.6
905,316 + -2.2
905,338 + +0.1
905,338 + +1.9
905,401 - +0.9
905,408 + -0.4
905,413 - -0.6
905,420 - +0.9
905,427 + -0.4
905,428 - +1.4
905,429 + -0.5
905,430 - -0.4
905,678 - -0.2
905,682 + -0.7
905,683 - -1.0
905,810 + Echvi_0793 0.12 +0.6
905,812 + Echvi_0793 0.12 +1.0
905,812 + Echvi_0793 0.12 -0.9
905,812 + Echvi_0793 0.12 +0.4
905,812 + Echvi_0793 0.12 -0.0
905,813 - Echvi_0793 0.12 -0.3
905,852 + Echvi_0793 0.15 -0.6
905,853 - Echvi_0793 0.15 -0.4
905,864 - Echvi_0793 0.16 -0.9
905,899 - Echvi_0793 0.19 +1.1
905,899 - Echvi_0793 0.19 -0.3
905,899 - Echvi_0793 0.19 +0.6
905,907 + Echvi_0793 0.19 -1.4
905,907 + Echvi_0793 0.19 +1.0
905,908 - Echvi_0793 0.19 +1.7
905,930 - Echvi_0793 0.21 +0.8
905,930 - Echvi_0793 0.21 -2.5
906,057 + Echvi_0793 0.30 -0.1
906,058 - Echvi_0793 0.30 -0.4
906,067 + Echvi_0793 0.31 -1.3
906,068 - Echvi_0793 0.31 +0.9
906,080 + Echvi_0793 0.32 -0.6
906,090 + Echvi_0793 0.33 +0.7
906,090 + Echvi_0793 0.33 -0.2
906,090 + Echvi_0793 0.33 +0.9
906,090 + Echvi_0793 0.33 +0.1
906,090 + Echvi_0793 0.33 +0.7
906,091 - Echvi_0793 0.33 -0.7
906,091 - Echvi_0793 0.33 -1.2
906,092 + Echvi_0793 0.33 -1.0
906,092 + Echvi_0793 0.33 +1.1
906,092 + Echvi_0793 0.33 +0.1
906,138 + Echvi_0793 0.36 +0.1
906,139 - Echvi_0793 0.36 +1.4
906,171 + Echvi_0793 0.39 +0.0
906,172 - Echvi_0793 0.39 -1.2
906,172 - Echvi_0793 0.39 +0.8
906,174 + Echvi_0793 0.39 +0.7
906,175 - Echvi_0793 0.39 +0.1
906,175 - Echvi_0793 0.39 +0.1
906,178 + Echvi_0793 0.39 +0.6
906,303 + Echvi_0793 0.48 -1.3
906,304 - Echvi_0793 0.48 -0.4
906,308 + Echvi_0793 0.49 -0.9
906,324 + Echvi_0793 0.50 -0.0
906,324 + Echvi_0793 0.50 -3.9
906,325 - Echvi_0793 0.50 +0.6
906,339 - Echvi_0793 0.51 -0.2
906,339 - Echvi_0793 0.51 +1.9
906,350 + Echvi_0793 0.52 -0.8
906,351 - Echvi_0793 0.52 -0.7
906,351 - Echvi_0793 0.52 -0.4

Or see this region's nucleotide sequence