Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0218

Experiment: m.b. Carbenicillin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0216 and B158DRAFT_0217 are separated by 91 nucleotidesB158DRAFT_0217 and B158DRAFT_0218 overlap by 4 nucleotidesB158DRAFT_0218 and B158DRAFT_0219 are separated by 460 nucleotides B158DRAFT_0216: B158DRAFT_0216 - hypothetical protein, at 221,364 to 222,065 _0216 B158DRAFT_0217: B158DRAFT_0217 - hypothetical protein, at 222,157 to 222,387 _0217 B158DRAFT_0218: B158DRAFT_0218 - Site-specific recombinase XerD, at 222,384 to 223,640 _0218 B158DRAFT_0219: B158DRAFT_0219 - Membrane-bound serine protease (ClpP class), at 224,101 to 225,531 _0219 Position (kb) 222 223 224Strain fitness (log2 ratio) -1 0 1at 221.414 kb on - strandat 221.467 kb on - strand, within B158DRAFT_0216at 221.561 kb on - strand, within B158DRAFT_0216at 221.608 kb on + strand, within B158DRAFT_0216at 221.718 kb on - strand, within B158DRAFT_0216at 221.789 kb on - strand, within B158DRAFT_0216at 221.822 kb on + strand, within B158DRAFT_0216at 221.830 kb on - strand, within B158DRAFT_0216at 221.830 kb on - strand, within B158DRAFT_0216at 221.832 kb on - strand, within B158DRAFT_0216at 222.136 kb on + strandat 222.144 kb on - strandat 222.144 kb on - strandat 222.144 kb on - strandat 222.144 kb on - strandat 222.144 kb on - strandat 222.173 kb on - strandat 222.177 kb on - strandat 222.186 kb on - strand, within B158DRAFT_0217at 222.229 kb on - strand, within B158DRAFT_0217at 222.234 kb on - strand, within B158DRAFT_0217at 222.414 kb on + strandat 222.432 kb on + strandat 222.632 kb on + strand, within B158DRAFT_0218at 222.719 kb on + strand, within B158DRAFT_0218at 222.719 kb on + strand, within B158DRAFT_0218at 222.781 kb on - strand, within B158DRAFT_0218at 222.788 kb on - strand, within B158DRAFT_0218at 222.819 kb on - strand, within B158DRAFT_0218at 222.900 kb on + strand, within B158DRAFT_0218at 222.925 kb on + strand, within B158DRAFT_0218at 222.933 kb on - strand, within B158DRAFT_0218at 222.996 kb on + strand, within B158DRAFT_0218at 222.997 kb on - strand, within B158DRAFT_0218at 222.997 kb on - strand, within B158DRAFT_0218at 223.002 kb on - strand, within B158DRAFT_0218at 223.004 kb on + strand, within B158DRAFT_0218at 223.009 kb on + strand, within B158DRAFT_0218at 223.012 kb on - strand, within B158DRAFT_0218at 223.014 kb on + strand, within B158DRAFT_0218at 223.021 kb on + strand, within B158DRAFT_0218at 223.070 kb on + strand, within B158DRAFT_0218at 223.078 kb on - strand, within B158DRAFT_0218at 223.126 kb on + strand, within B158DRAFT_0218at 223.171 kb on + strand, within B158DRAFT_0218at 223.171 kb on + strand, within B158DRAFT_0218at 223.201 kb on + strand, within B158DRAFT_0218at 223.262 kb on - strand, within B158DRAFT_0218at 223.289 kb on + strand, within B158DRAFT_0218at 223.319 kb on + strand, within B158DRAFT_0218at 223.327 kb on - strand, within B158DRAFT_0218at 223.345 kb on - strand, within B158DRAFT_0218at 223.350 kb on - strand, within B158DRAFT_0218at 223.351 kb on - strand, within B158DRAFT_0218at 223.433 kb on + strand, within B158DRAFT_0218at 223.443 kb on + strand, within B158DRAFT_0218at 223.451 kb on - strand, within B158DRAFT_0218at 223.463 kb on + strand, within B158DRAFT_0218at 223.463 kb on + strand, within B158DRAFT_0218at 223.465 kb on - strand, within B158DRAFT_0218at 223.570 kb on - strandat 223.597 kb on + strandat 223.597 kb on + strandat 223.605 kb on - strandat 223.607 kb on + strandat 223.615 kb on - strandat 223.638 kb on - strandat 223.650 kb on - strandat 223.976 kb on - strandat 223.993 kb on - strandat 223.993 kb on - strandat 224.029 kb on + strandat 224.029 kb on + strandat 224.053 kb on + strandat 224.061 kb on - strandat 224.070 kb on + strandat 224.078 kb on - strandat 224.103 kb on + strandat 224.110 kb on + strandat 224.147 kb on + strandat 224.168 kb on - strandat 224.207 kb on + strandat 224.236 kb on + strandat 224.272 kb on + strand, within B158DRAFT_0219at 224.284 kb on - strand, within B158DRAFT_0219at 224.312 kb on - strand, within B158DRAFT_0219at 224.312 kb on - strand, within B158DRAFT_0219at 224.358 kb on + strand, within B158DRAFT_0219at 224.391 kb on - strand, within B158DRAFT_0219at 224.423 kb on + strand, within B158DRAFT_0219at 224.464 kb on + strand, within B158DRAFT_0219at 224.472 kb on - strand, within B158DRAFT_0219at 224.480 kb on - strand, within B158DRAFT_0219at 224.526 kb on + strand, within B158DRAFT_0219at 224.548 kb on - strand, within B158DRAFT_0219

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.01 mg/ml
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221,414 - -0.2
221,467 - B158DRAFT_0216 0.15 -0.8
221,561 - B158DRAFT_0216 0.28 -0.3
221,608 + B158DRAFT_0216 0.35 -0.2
221,718 - B158DRAFT_0216 0.50 -0.4
221,789 - B158DRAFT_0216 0.61 +0.2
221,822 + B158DRAFT_0216 0.65 +0.1
221,830 - B158DRAFT_0216 0.66 -0.7
221,830 - B158DRAFT_0216 0.66 -0.6
221,832 - B158DRAFT_0216 0.67 +0.1
222,136 + -0.0
222,144 - -0.5
222,144 - -0.2
222,144 - +0.1
222,144 - -0.2
222,144 - -0.2
222,173 - +0.7
222,177 - -0.1
222,186 - B158DRAFT_0217 0.13 -0.4
222,229 - B158DRAFT_0217 0.31 -1.0
222,234 - B158DRAFT_0217 0.33 -0.4
222,414 + -1.0
222,432 + -0.4
222,632 + B158DRAFT_0218 0.20 -0.1
222,719 + B158DRAFT_0218 0.27 -0.2
222,719 + B158DRAFT_0218 0.27 +0.1
222,781 - B158DRAFT_0218 0.32 -0.2
222,788 - B158DRAFT_0218 0.32 -0.3
222,819 - B158DRAFT_0218 0.35 +1.4
222,900 + B158DRAFT_0218 0.41 -0.2
222,925 + B158DRAFT_0218 0.43 +0.2
222,933 - B158DRAFT_0218 0.44 -0.4
222,996 + B158DRAFT_0218 0.49 +0.4
222,997 - B158DRAFT_0218 0.49 +0.5
222,997 - B158DRAFT_0218 0.49 -0.1
223,002 - B158DRAFT_0218 0.49 +0.5
223,004 + B158DRAFT_0218 0.49 -0.2
223,009 + B158DRAFT_0218 0.50 -0.3
223,012 - B158DRAFT_0218 0.50 -0.5
223,014 + B158DRAFT_0218 0.50 -1.4
223,021 + B158DRAFT_0218 0.51 +0.6
223,070 + B158DRAFT_0218 0.55 -0.4
223,078 - B158DRAFT_0218 0.55 -0.2
223,126 + B158DRAFT_0218 0.59 -0.1
223,171 + B158DRAFT_0218 0.63 +1.0
223,171 + B158DRAFT_0218 0.63 -1.1
223,201 + B158DRAFT_0218 0.65 +0.4
223,262 - B158DRAFT_0218 0.70 -0.1
223,289 + B158DRAFT_0218 0.72 -0.2
223,319 + B158DRAFT_0218 0.74 -0.8
223,327 - B158DRAFT_0218 0.75 -0.1
223,345 - B158DRAFT_0218 0.76 +0.4
223,350 - B158DRAFT_0218 0.77 -0.0
223,351 - B158DRAFT_0218 0.77 -0.2
223,433 + B158DRAFT_0218 0.83 +0.3
223,443 + B158DRAFT_0218 0.84 -0.3
223,451 - B158DRAFT_0218 0.85 +0.1
223,463 + B158DRAFT_0218 0.86 -0.3
223,463 + B158DRAFT_0218 0.86 -0.4
223,465 - B158DRAFT_0218 0.86 -0.1
223,570 - -0.3
223,597 + -0.2
223,597 + +1.0
223,605 - -0.4
223,607 + +0.2
223,615 - -0.5
223,638 - -0.4
223,650 - -0.2
223,976 - -0.5
223,993 - -0.3
223,993 - -0.8
224,029 + -0.6
224,029 + -1.7
224,053 + +0.4
224,061 - -0.2
224,070 + +0.7
224,078 - +0.0
224,103 + +0.2
224,110 + +0.0
224,147 + -0.5
224,168 - -0.0
224,207 + -0.4
224,236 + -0.0
224,272 + B158DRAFT_0219 0.12 -0.1
224,284 - B158DRAFT_0219 0.13 +0.5
224,312 - B158DRAFT_0219 0.15 -0.4
224,312 - B158DRAFT_0219 0.15 -0.2
224,358 + B158DRAFT_0219 0.18 -0.3
224,391 - B158DRAFT_0219 0.20 -0.8
224,423 + B158DRAFT_0219 0.23 -0.8
224,464 + B158DRAFT_0219 0.25 -0.8
224,472 - B158DRAFT_0219 0.26 +0.2
224,480 - B158DRAFT_0219 0.26 +0.1
224,526 + B158DRAFT_0219 0.30 +0.0
224,548 - B158DRAFT_0219 0.31 -0.1

Or see this region's nucleotide sequence