Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3936 and Atu3937 are separated by 563 nucleotides Atu3937 and Atu3938 are separated by 328 nucleotides Atu3938 and Atu3939 are separated by 58 nucleotides
Atu3936: Atu3936 - GntR family transcriptional regulator, at 1,040,507 to 1,041,253
Atu3936
Atu3937: Atu3937 - 16S ribosomal RNA, at 1,041,817 to 1,043,296
Atu3937
Atu3938: Atu3938 - tRNA-Ile, at 1,043,625 to 1,043,701
Atu3938
Atu3939: Atu3939 - tRNA-Ala, at 1,043,760 to 1,043,835
Atu3939
Position (kb)
1041
1042
1043
1044 Strain fitness (log2 ratio)
-1
0
1
2 at 1040.834 kb on + strand, within Atu3936 at 1040.834 kb on + strand, within Atu3936 at 1040.851 kb on + strand, within Atu3936 at 1040.888 kb on - strand, within Atu3936 at 1040.898 kb on + strand, within Atu3936 at 1040.911 kb on - strand, within Atu3936 at 1040.916 kb on - strand, within Atu3936 at 1041.004 kb on - strand, within Atu3936 at 1041.047 kb on + strand, within Atu3936 at 1041.047 kb on + strand, within Atu3936 at 1041.047 kb on + strand, within Atu3936 at 1041.068 kb on + strand, within Atu3936 at 1041.073 kb on + strand, within Atu3936 at 1041.081 kb on - strand, within Atu3936 at 1041.086 kb on - strand, within Atu3936 at 1041.133 kb on + strand, within Atu3936 at 1041.198 kb on - strand at 1041.239 kb on - strand at 1041.254 kb on + strand at 1041.310 kb on + strand at 1041.318 kb on - strand at 1041.318 kb on - strand at 1041.318 kb on - strand at 1041.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 1,040,834 + Atu3936 0.44 +1.9 1,040,834 + Atu3936 0.44 +1.8 1,040,851 + Atu3936 0.46 +2.0 1,040,888 - Atu3936 0.51 +1.2 1,040,898 + Atu3936 0.52 +1.4 1,040,911 - Atu3936 0.54 +1.0 1,040,916 - Atu3936 0.55 +1.5 1,041,004 - Atu3936 0.67 +1.5 1,041,047 + Atu3936 0.72 +1.7 1,041,047 + Atu3936 0.72 +1.5 1,041,047 + Atu3936 0.72 +1.5 1,041,068 + Atu3936 0.75 +1.8 1,041,073 + Atu3936 0.76 +1.1 1,041,081 - Atu3936 0.77 +0.7 1,041,086 - Atu3936 0.78 +1.8 1,041,133 + Atu3936 0.84 +1.6 1,041,198 - +1.1 1,041,239 - +0.4 1,041,254 + -0.2 1,041,310 + +0.2 1,041,318 - +0.2 1,041,318 - +0.6 1,041,318 - +0.2 1,041,325 - +0.0
Or see this region's nucleotide sequence