Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_767

Experiment: Vancomycin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_764 and PfGW456L13_765 overlap by 1 nucleotidesPfGW456L13_765 and PfGW456L13_766 are separated by 19 nucleotidesPfGW456L13_766 and PfGW456L13_767 are separated by 45 nucleotidesPfGW456L13_767 and PfGW456L13_768 are separated by 18 nucleotides PfGW456L13_764 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 869,945 to 870,835 _764 PfGW456L13_765 - Chorismate--pyruvate lyase (EC 4.1.3.40), at 870,835 to 871,239 _765 PfGW456L13_766 - hypothetical protein, at 871,259 to 871,552 _766 PfGW456L13_767 - Rubredoxin, at 871,598 to 871,768 _767 PfGW456L13_768 - Rubredoxin-NAD(+) reductase (EC 1.18.1.1), at 871,787 to 872,935 _768 Position (kb) 871 872Strain fitness (log2 ratio) -2 -1 0 1 2 3at 870.832 kb on - strandat 870.832 kb on - strandat 870.832 kb on - strandat 871.151 kb on + strand, within PfGW456L13_765at 871.151 kb on + strand, within PfGW456L13_765at 871.151 kb on + strand, within PfGW456L13_765at 871.151 kb on + strand, within PfGW456L13_765at 871.151 kb on + strand, within PfGW456L13_765at 871.151 kb on + strand, within PfGW456L13_765at 871.152 kb on - strand, within PfGW456L13_765at 871.152 kb on - strand, within PfGW456L13_765at 871.152 kb on - strand, within PfGW456L13_765at 871.152 kb on - strand, within PfGW456L13_765at 871.152 kb on - strand, within PfGW456L13_765at 871.436 kb on + strand, within PfGW456L13_766at 871.437 kb on - strand, within PfGW456L13_766at 871.544 kb on + strandat 871.544 kb on + strandat 871.544 kb on + strandat 871.545 kb on - strandat 871.545 kb on - strandat 871.545 kb on - strandat 871.592 kb on + strandat 871.592 kb on + strandat 871.592 kb on + strandat 871.592 kb on + strandat 871.592 kb on + strandat 871.592 kb on + strandat 871.592 kb on + strandat 871.592 kb on + strandat 871.593 kb on - strandat 871.593 kb on - strandat 871.615 kb on + strand, within PfGW456L13_767at 871.615 kb on + strand, within PfGW456L13_767at 871.615 kb on + strand, within PfGW456L13_767at 871.615 kb on + strand, within PfGW456L13_767at 871.615 kb on + strand, within PfGW456L13_767at 871.615 kb on + strand, within PfGW456L13_767at 871.616 kb on - strand, within PfGW456L13_767at 871.616 kb on - strand, within PfGW456L13_767at 871.634 kb on + strand, within PfGW456L13_767at 871.634 kb on + strand, within PfGW456L13_767at 871.634 kb on + strand, within PfGW456L13_767at 871.634 kb on + strand, within PfGW456L13_767at 871.770 kb on + strandat 871.781 kb on + strandat 871.803 kb on + strandat 871.804 kb on - strandat 871.804 kb on - strandat 871.829 kb on + strandat 871.829 kb on + strandat 871.908 kb on - strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.010 kb on + strand, within PfGW456L13_768at 872.011 kb on - strand, within PfGW456L13_768at 872.011 kb on - strand, within PfGW456L13_768at 872.011 kb on - strand, within PfGW456L13_768at 872.011 kb on - strand, within PfGW456L13_768at 872.011 kb on - strand, within PfGW456L13_768at 872.014 kb on + strand, within PfGW456L13_768at 872.015 kb on - strand, within PfGW456L13_768at 872.015 kb on - strand, within PfGW456L13_768at 872.084 kb on + strand, within PfGW456L13_768at 872.084 kb on + strand, within PfGW456L13_768at 872.085 kb on - strand, within PfGW456L13_768at 872.183 kb on + strand, within PfGW456L13_768at 872.183 kb on + strand, within PfGW456L13_768at 872.183 kb on + strand, within PfGW456L13_768at 872.183 kb on + strand, within PfGW456L13_768at 872.183 kb on + strand, within PfGW456L13_768at 872.184 kb on - strand, within PfGW456L13_768at 872.285 kb on + strand, within PfGW456L13_768at 872.597 kb on + strand, within PfGW456L13_768at 872.597 kb on + strand, within PfGW456L13_768at 872.598 kb on - strand, within PfGW456L13_768at 872.598 kb on - strand, within PfGW456L13_768at 872.598 kb on - strand, within PfGW456L13_768at 872.598 kb on - strand, within PfGW456L13_768at 872.642 kb on + strand, within PfGW456L13_768at 872.642 kb on + strand, within PfGW456L13_768at 872.642 kb on + strand, within PfGW456L13_768at 872.642 kb on + strand, within PfGW456L13_768at 872.642 kb on + strand, within PfGW456L13_768at 872.643 kb on - strand, within PfGW456L13_768at 872.643 kb on - strand, within PfGW456L13_768at 872.643 kb on - strand, within PfGW456L13_768at 872.643 kb on - strand, within PfGW456L13_768at 872.643 kb on - strand, within PfGW456L13_768at 872.643 kb on - strand, within PfGW456L13_768at 872.714 kb on + strand, within PfGW456L13_768at 872.714 kb on + strand, within PfGW456L13_768at 872.714 kb on + strand, within PfGW456L13_768at 872.714 kb on + strand, within PfGW456L13_768

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml
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870,832 - +0.0
870,832 - +0.4
870,832 - +1.3
871,151 + PfGW456L13_765 0.78 +1.3
871,151 + PfGW456L13_765 0.78 +1.3
871,151 + PfGW456L13_765 0.78 +1.1
871,151 + PfGW456L13_765 0.78 +2.1
871,151 + PfGW456L13_765 0.78 +2.8
871,151 + PfGW456L13_765 0.78 +0.3
871,152 - PfGW456L13_765 0.78 +0.3
871,152 - PfGW456L13_765 0.78 -1.2
871,152 - PfGW456L13_765 0.78 -0.0
871,152 - PfGW456L13_765 0.78 +0.3
871,152 - PfGW456L13_765 0.78 +0.7
871,436 + PfGW456L13_766 0.60 +0.6
871,437 - PfGW456L13_766 0.61 -0.1
871,544 + +0.1
871,544 + -1.5
871,544 + +0.3
871,545 - +0.3
871,545 - +0.4
871,545 - +1.3
871,592 + -1.0
871,592 + +0.6
871,592 + +0.9
871,592 + -0.0
871,592 + +0.1
871,592 + +0.3
871,592 + -0.2
871,592 + +0.4
871,593 - +0.6
871,593 - +0.1
871,615 + PfGW456L13_767 0.10 +0.0
871,615 + PfGW456L13_767 0.10 +0.2
871,615 + PfGW456L13_767 0.10 +0.4
871,615 + PfGW456L13_767 0.10 -0.4
871,615 + PfGW456L13_767 0.10 +0.4
871,615 + PfGW456L13_767 0.10 +0.5
871,616 - PfGW456L13_767 0.11 +0.3
871,616 - PfGW456L13_767 0.11 -0.3
871,634 + PfGW456L13_767 0.21 +1.4
871,634 + PfGW456L13_767 0.21 +0.6
871,634 + PfGW456L13_767 0.21 +1.9
871,634 + PfGW456L13_767 0.21 +0.3
871,770 + -0.0
871,781 + +0.2
871,803 + +0.4
871,804 - +0.3
871,804 - +1.5
871,829 + +1.1
871,829 + +0.6
871,908 - PfGW456L13_768 0.11 +0.2
872,010 + PfGW456L13_768 0.19 -0.6
872,010 + PfGW456L13_768 0.19 -0.0
872,010 + PfGW456L13_768 0.19 -0.9
872,010 + PfGW456L13_768 0.19 -0.2
872,010 + PfGW456L13_768 0.19 -0.9
872,010 + PfGW456L13_768 0.19 +1.3
872,010 + PfGW456L13_768 0.19 -1.1
872,010 + PfGW456L13_768 0.19 +1.2
872,010 + PfGW456L13_768 0.19 -2.1
872,010 + PfGW456L13_768 0.19 +0.5
872,010 + PfGW456L13_768 0.19 +0.2
872,010 + PfGW456L13_768 0.19 +0.3
872,011 - PfGW456L13_768 0.19 -0.5
872,011 - PfGW456L13_768 0.19 -1.2
872,011 - PfGW456L13_768 0.19 +0.6
872,011 - PfGW456L13_768 0.19 -0.0
872,011 - PfGW456L13_768 0.19 -0.1
872,014 + PfGW456L13_768 0.20 +0.8
872,015 - PfGW456L13_768 0.20 -0.8
872,015 - PfGW456L13_768 0.20 -0.6
872,084 + PfGW456L13_768 0.26 +1.1
872,084 + PfGW456L13_768 0.26 +0.1
872,085 - PfGW456L13_768 0.26 -0.0
872,183 + PfGW456L13_768 0.34 -0.9
872,183 + PfGW456L13_768 0.34 +0.7
872,183 + PfGW456L13_768 0.34 +1.4
872,183 + PfGW456L13_768 0.34 +0.4
872,183 + PfGW456L13_768 0.34 -0.2
872,184 - PfGW456L13_768 0.35 -0.5
872,285 + PfGW456L13_768 0.43 +1.1
872,597 + PfGW456L13_768 0.70 -0.7
872,597 + PfGW456L13_768 0.70 +0.4
872,598 - PfGW456L13_768 0.71 -0.3
872,598 - PfGW456L13_768 0.71 +0.7
872,598 - PfGW456L13_768 0.71 +0.2
872,598 - PfGW456L13_768 0.71 +0.5
872,642 + PfGW456L13_768 0.74 +0.3
872,642 + PfGW456L13_768 0.74 +0.3
872,642 + PfGW456L13_768 0.74 -0.1
872,642 + PfGW456L13_768 0.74 +1.0
872,642 + PfGW456L13_768 0.74 +0.0
872,643 - PfGW456L13_768 0.74 +0.4
872,643 - PfGW456L13_768 0.74 -0.4
872,643 - PfGW456L13_768 0.74 -0.2
872,643 - PfGW456L13_768 0.74 +0.2
872,643 - PfGW456L13_768 0.74 +0.7
872,643 - PfGW456L13_768 0.74 -0.9
872,714 + PfGW456L13_768 0.81 +0.8
872,714 + PfGW456L13_768 0.81 +0.2
872,714 + PfGW456L13_768 0.81 -0.4
872,714 + PfGW456L13_768 0.81 -0.4

Or see this region's nucleotide sequence