Experiment: Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_628 and PfGW456L13_629 are separated by 1 nucleotides PfGW456L13_629 and PfGW456L13_630 are separated by 74 nucleotides PfGW456L13_630 and PfGW456L13_631 are separated by 54 nucleotides
PfGW456L13_628 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 718,051 to 718,989
_628
PfGW456L13_629 - ABC transporter ATP-binding protein USSDB6B, at 718,991 to 719,716
_629
PfGW456L13_630 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 719,791 to 720,939
_630
PfGW456L13_631 - membrane protein, putative, at 720,994 to 721,932
_631
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 718.814 kb on + strand, within PfGW456L13_628 at 718.814 kb on + strand, within PfGW456L13_628 at 718.814 kb on + strand, within PfGW456L13_628 at 718.814 kb on + strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.819 kb on + strand, within PfGW456L13_628 at 718.819 kb on + strand, within PfGW456L13_628 at 718.820 kb on - strand, within PfGW456L13_628 at 718.827 kb on + strand, within PfGW456L13_628 at 718.827 kb on + strand, within PfGW456L13_628 at 718.827 kb on + strand, within PfGW456L13_628 at 718.828 kb on - strand, within PfGW456L13_628 at 718.828 kb on - strand, within PfGW456L13_628 at 718.871 kb on + strand, within PfGW456L13_628 at 718.872 kb on - strand, within PfGW456L13_628 at 718.872 kb on - strand, within PfGW456L13_628 at 718.872 kb on - strand, within PfGW456L13_628 at 718.912 kb on + strand at 718.912 kb on + strand at 718.913 kb on - strand at 718.913 kb on - strand at 718.913 kb on - strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 719.052 kb on + strand at 719.052 kb on + strand at 719.052 kb on + strand at 719.053 kb on - strand at 719.053 kb on - strand at 719.053 kb on - strand at 719.053 kb on - strand at 719.154 kb on + strand, within PfGW456L13_629 at 719.154 kb on + strand, within PfGW456L13_629 at 719.154 kb on + strand, within PfGW456L13_629 at 719.154 kb on + strand, within PfGW456L13_629 at 719.155 kb on - strand, within PfGW456L13_629 at 719.155 kb on - strand, within PfGW456L13_629 at 719.155 kb on - strand, within PfGW456L13_629 at 719.358 kb on + strand, within PfGW456L13_629 at 719.358 kb on + strand, within PfGW456L13_629 at 719.358 kb on + strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.688 kb on + strand at 719.688 kb on + strand at 719.688 kb on + strand at 719.688 kb on + strand at 719.688 kb on + strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 720.039 kb on + strand, within PfGW456L13_630 at 720.641 kb on + strand, within PfGW456L13_630 at 720.641 kb on + strand, within PfGW456L13_630 at 720.641 kb on + strand, within PfGW456L13_630 at 720.642 kb on - strand, within PfGW456L13_630 at 720.939 kb on + strand at 720.939 kb on + strand at 720.939 kb on + strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.963 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.980 kb on + strand at 720.980 kb on + strand at 720.981 kb on - strand at 720.995 kb on + strand at 720.996 kb on - strand at 721.074 kb on + strand at 721.087 kb on - strand at 721.185 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.251 kb on - strand, within PfGW456L13_631 at 721.251 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.332 kb on + strand, within PfGW456L13_631 at 721.332 kb on + strand, within PfGW456L13_631 at 721.333 kb on - strand, within PfGW456L13_631 at 721.419 kb on + strand, within PfGW456L13_631 at 721.419 kb on + strand, within PfGW456L13_631 at 721.420 kb on - strand, within PfGW456L13_631 at 721.420 kb on - strand, within PfGW456L13_631 at 721.449 kb on + strand, within PfGW456L13_631 at 721.449 kb on + strand, within PfGW456L13_631 at 721.500 kb on + strand, within PfGW456L13_631 at 721.500 kb on + strand, within PfGW456L13_631 at 721.501 kb on - strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.634 kb on + strand, within PfGW456L13_631 at 721.634 kb on + strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml remove 718,814 + PfGW456L13_628 0.81 -0.2 718,814 + PfGW456L13_628 0.81 -1.4 718,814 + PfGW456L13_628 0.81 -1.1 718,814 + PfGW456L13_628 0.81 -0.6 718,815 - PfGW456L13_628 0.81 -0.5 718,815 - PfGW456L13_628 0.81 +1.2 718,815 - PfGW456L13_628 0.81 +0.7 718,815 - PfGW456L13_628 0.81 -0.2 718,815 - PfGW456L13_628 0.81 +0.6 718,815 - PfGW456L13_628 0.81 -0.7 718,819 + PfGW456L13_628 0.82 -1.8 718,819 + PfGW456L13_628 0.82 -1.6 718,820 - PfGW456L13_628 0.82 -0.5 718,827 + PfGW456L13_628 0.83 -2.7 718,827 + PfGW456L13_628 0.83 -0.6 718,827 + PfGW456L13_628 0.83 -0.8 718,828 - PfGW456L13_628 0.83 +0.8 718,828 - PfGW456L13_628 0.83 +1.8 718,871 + PfGW456L13_628 0.87 -0.3 718,872 - PfGW456L13_628 0.87 -0.4 718,872 - PfGW456L13_628 0.87 +0.1 718,872 - PfGW456L13_628 0.87 -1.1 718,912 + -0.5 718,912 + +1.0 718,913 - +0.0 718,913 - -0.4 718,913 - +0.0 718,966 + -1.2 718,966 + +0.7 718,966 + -0.4 718,966 + +0.7 718,966 + +0.4 718,966 + -1.8 718,967 - -1.6 718,967 - -0.3 718,967 - +0.3 718,967 - -1.1 718,967 - -0.1 718,967 - -0.1 718,967 - -0.6 718,967 - -1.1 718,967 - +0.2 718,967 - +0.4 718,967 - +1.1 718,967 - +0.2 718,967 - +0.5 718,967 - -0.3 718,967 - +0.1 719,052 + -0.6 719,052 + +0.2 719,052 + +0.2 719,053 - -0.5 719,053 - -1.3 719,053 - +0.1 719,053 - +1.1 719,154 + PfGW456L13_629 0.22 -2.3 719,154 + PfGW456L13_629 0.22 +0.6 719,154 + PfGW456L13_629 0.22 -0.5 719,154 + PfGW456L13_629 0.22 -0.2 719,155 - PfGW456L13_629 0.23 -0.1 719,155 - PfGW456L13_629 0.23 +0.1 719,155 - PfGW456L13_629 0.23 +0.4 719,358 + PfGW456L13_629 0.51 -0.3 719,358 + PfGW456L13_629 0.51 +0.2 719,358 + PfGW456L13_629 0.51 -0.0 719,359 - PfGW456L13_629 0.51 +0.1 719,359 - PfGW456L13_629 0.51 -0.8 719,359 - PfGW456L13_629 0.51 +1.1 719,359 - PfGW456L13_629 0.51 +0.5 719,359 - PfGW456L13_629 0.51 -0.1 719,688 + +0.9 719,688 + +0.2 719,688 + -0.3 719,688 + +0.1 719,688 + +0.9 719,689 - +0.4 719,689 - +0.5 719,689 - -0.6 719,689 - -1.2 719,689 - -0.0 719,689 - -0.3 719,689 - -0.1 720,039 + PfGW456L13_630 0.22 +0.4 720,641 + PfGW456L13_630 0.74 +1.2 720,641 + PfGW456L13_630 0.74 -0.4 720,641 + PfGW456L13_630 0.74 +0.3 720,642 - PfGW456L13_630 0.74 +0.6 720,939 + +0.2 720,939 + +0.9 720,939 + +0.9 720,940 - -0.1 720,940 - -0.4 720,940 - -1.3 720,940 - +0.1 720,940 - -0.7 720,940 - +0.1 720,963 + +1.4 720,973 + -0.3 720,973 + -0.7 720,973 + -0.6 720,974 - +0.9 720,974 - +0.9 720,974 - +0.1 720,974 - -0.8 720,974 - -0.3 720,974 - -1.6 720,977 + +1.2 720,977 + +0.9 720,977 + -0.7 720,977 + -0.0 720,977 + -0.1 720,977 + +0.8 720,977 + +0.2 720,978 - -0.0 720,978 - +0.2 720,978 - +0.5 720,978 - +0.5 720,978 - -0.5 720,978 - +0.5 720,978 - -0.8 720,980 + -0.8 720,980 + +1.1 720,981 - -0.1 720,995 + +0.7 720,996 - +0.0 721,074 + +0.5 721,087 - -0.1 721,185 + PfGW456L13_631 0.20 +1.7 721,208 + PfGW456L13_631 0.23 +0.4 721,208 + PfGW456L13_631 0.23 -0.3 721,208 + PfGW456L13_631 0.23 +0.2 721,208 + PfGW456L13_631 0.23 -2.8 721,208 + PfGW456L13_631 0.23 -2.1 721,250 + PfGW456L13_631 0.27 -0.8 721,250 + PfGW456L13_631 0.27 +0.1 721,250 + PfGW456L13_631 0.27 -0.0 721,250 + PfGW456L13_631 0.27 -0.3 721,251 - PfGW456L13_631 0.27 +0.1 721,251 - PfGW456L13_631 0.27 +0.1 721,257 - PfGW456L13_631 0.28 +1.1 721,257 - PfGW456L13_631 0.28 -2.6 721,257 - PfGW456L13_631 0.28 -0.7 721,257 - PfGW456L13_631 0.28 +0.2 721,332 + PfGW456L13_631 0.36 -0.2 721,332 + PfGW456L13_631 0.36 -0.6 721,333 - PfGW456L13_631 0.36 -0.5 721,419 + PfGW456L13_631 0.45 -0.8 721,419 + PfGW456L13_631 0.45 +0.4 721,420 - PfGW456L13_631 0.45 -0.2 721,420 - PfGW456L13_631 0.45 -0.3 721,449 + PfGW456L13_631 0.48 +0.3 721,449 + PfGW456L13_631 0.48 +0.4 721,500 + PfGW456L13_631 0.54 +0.1 721,500 + PfGW456L13_631 0.54 -0.0 721,501 - PfGW456L13_631 0.54 +0.1 721,631 + PfGW456L13_631 0.68 -0.7 721,631 + PfGW456L13_631 0.68 -0.0 721,631 + PfGW456L13_631 0.68 +0.2 721,631 + PfGW456L13_631 0.68 -1.1 721,631 + PfGW456L13_631 0.68 -0.1 721,631 + PfGW456L13_631 0.68 +0.6 721,631 + PfGW456L13_631 0.68 +0.5 721,631 + PfGW456L13_631 0.68 +1.6 721,631 + PfGW456L13_631 0.68 -0.0 721,632 - PfGW456L13_631 0.68 -0.0 721,632 - PfGW456L13_631 0.68 -1.0 721,632 - PfGW456L13_631 0.68 -0.1 721,632 - PfGW456L13_631 0.68 -0.3 721,632 - PfGW456L13_631 0.68 -0.8 721,634 + PfGW456L13_631 0.68 +0.3 721,634 + PfGW456L13_631 0.68 +0.5 721,635 - PfGW456L13_631 0.68 +0.2 721,635 - PfGW456L13_631 0.68 +0.0 721,635 - PfGW456L13_631 0.68 +0.5 721,635 - PfGW456L13_631 0.68 -0.7
Or see this region's nucleotide sequence