Experiment: Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_581 and PfGW456L13_582 overlap by 23 nucleotides PfGW456L13_582 and PfGW456L13_583 are separated by 71 nucleotides PfGW456L13_583 and PfGW456L13_584 are separated by 437 nucleotides PfGW456L13_584 and PfGW456L13_585 are separated by 10 nucleotides
PfGW456L13_581 - hypothetical protein, at 674,425 to 674,538
_581
PfGW456L13_582 - probable exported protein YPO0432, at 674,516 to 674,680
_582
PfGW456L13_583 - FIG00956005: hypothetical protein, at 674,752 to 675,039
_583
PfGW456L13_584 - alginate biosynthesis transcriptional regulatory protein AlgB, at 675,477 to 676,823
_584
PfGW456L13_585 - Sensory box histidine kinase, at 676,834 to 678,624
_585
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 674.514 kb on + strand, within PfGW456L13_581 at 674.515 kb on - strand, within PfGW456L13_581 at 674.615 kb on - strand, within PfGW456L13_582 at 674.630 kb on + strand, within PfGW456L13_582 at 674.693 kb on + strand at 674.693 kb on + strand at 674.754 kb on - strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 675.300 kb on - strand at 675.300 kb on - strand at 675.335 kb on + strand at 675.335 kb on + strand at 675.335 kb on + strand at 675.336 kb on - strand at 675.336 kb on - strand at 675.336 kb on - strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.381 kb on + strand at 675.381 kb on + strand at 675.382 kb on - strand at 675.382 kb on - strand at 675.443 kb on + strand at 675.443 kb on + strand at 675.444 kb on - strand at 675.448 kb on - strand at 675.461 kb on + strand at 675.462 kb on - strand at 675.470 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.543 kb on - strand at 675.573 kb on + strand at 675.573 kb on + strand at 675.702 kb on - strand, within PfGW456L13_584 at 675.792 kb on + strand, within PfGW456L13_584 at 675.792 kb on + strand, within PfGW456L13_584 at 675.793 kb on - strand, within PfGW456L13_584 at 675.793 kb on - strand, within PfGW456L13_584 at 675.793 kb on - strand, within PfGW456L13_584 at 675.895 kb on + strand, within PfGW456L13_584 at 675.895 kb on + strand, within PfGW456L13_584 at 675.896 kb on - strand, within PfGW456L13_584 at 675.896 kb on - strand, within PfGW456L13_584 at 675.896 kb on - strand, within PfGW456L13_584 at 675.896 kb on - strand, within PfGW456L13_584 at 675.987 kb on - strand, within PfGW456L13_584 at 676.278 kb on + strand, within PfGW456L13_584 at 676.278 kb on + strand, within PfGW456L13_584 at 676.393 kb on - strand, within PfGW456L13_584 at 676.393 kb on - strand, within PfGW456L13_584 at 676.410 kb on - strand, within PfGW456L13_584 at 676.410 kb on - strand, within PfGW456L13_584 at 676.410 kb on - strand, within PfGW456L13_584 at 676.410 kb on - strand, within PfGW456L13_584 at 676.410 kb on - strand, within PfGW456L13_584 at 676.410 kb on - strand, within PfGW456L13_584 at 676.448 kb on + strand, within PfGW456L13_584 at 676.448 kb on + strand, within PfGW456L13_584 at 676.448 kb on + strand, within PfGW456L13_584 at 676.448 kb on + strand, within PfGW456L13_584 at 676.449 kb on - strand, within PfGW456L13_584 at 676.494 kb on + strand, within PfGW456L13_584 at 676.494 kb on + strand, within PfGW456L13_584 at 676.643 kb on + strand, within PfGW456L13_584 at 676.812 kb on + strand at 676.812 kb on + strand at 676.812 kb on + strand at 676.813 kb on - strand at 676.813 kb on - strand at 676.971 kb on + strand at 676.971 kb on + strand at 676.972 kb on - strand at 677.086 kb on + strand, within PfGW456L13_585 at 677.087 kb on - strand, within PfGW456L13_585 at 677.087 kb on - strand, within PfGW456L13_585 at 677.170 kb on + strand, within PfGW456L13_585 at 677.170 kb on + strand, within PfGW456L13_585 at 677.170 kb on + strand, within PfGW456L13_585 at 677.171 kb on - strand, within PfGW456L13_585 at 677.191 kb on + strand, within PfGW456L13_585 at 677.191 kb on + strand, within PfGW456L13_585 at 677.191 kb on + strand, within PfGW456L13_585 at 677.192 kb on - strand, within PfGW456L13_585 at 677.192 kb on - strand, within PfGW456L13_585 at 677.192 kb on - strand, within PfGW456L13_585 at 677.192 kb on - strand, within PfGW456L13_585 at 677.192 kb on - strand, within PfGW456L13_585 at 677.192 kb on - strand, within PfGW456L13_585 at 677.262 kb on - strand, within PfGW456L13_585 at 677.301 kb on + strand, within PfGW456L13_585 at 677.302 kb on - strand, within PfGW456L13_585 at 677.302 kb on - strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.585 kb on + strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.586 kb on - strand, within PfGW456L13_585 at 677.685 kb on + strand, within PfGW456L13_585 at 677.745 kb on + strand, within PfGW456L13_585
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml remove 674,514 + PfGW456L13_581 0.78 -1.1 674,515 - PfGW456L13_581 0.79 -1.6 674,615 - PfGW456L13_582 0.60 +0.2 674,630 + PfGW456L13_582 0.69 -0.9 674,693 + -0.9 674,693 + +0.6 674,754 - -0.2 674,779 + -1.1 674,779 + -0.5 674,779 + -1.3 674,779 + +0.2 674,779 + +0.7 674,779 + +0.1 674,779 + -0.2 674,779 + -0.1 674,780 - -0.9 674,780 - +1.0 674,780 - +0.4 674,780 - +0.3 674,780 - +0.5 674,780 - +0.0 674,780 - -0.9 674,780 - -0.4 674,780 - -0.1 674,780 - +0.6 675,300 - +0.3 675,300 - +0.1 675,335 + -0.6 675,335 + -0.9 675,335 + -1.4 675,336 - +0.3 675,336 - -1.4 675,336 - +0.1 675,365 + -0.1 675,365 + -2.2 675,365 + -0.8 675,365 + -0.1 675,365 + -1.2 675,366 - +1.3 675,366 - +0.7 675,366 - +0.5 675,366 - -1.7 675,366 - +0.4 675,366 - +0.8 675,366 - -0.0 675,366 - +0.5 675,381 + +1.0 675,381 + +1.1 675,382 - -0.2 675,382 - +0.5 675,443 + +0.1 675,443 + +0.6 675,444 - +1.0 675,448 - +1.7 675,461 + +1.3 675,462 - -1.1 675,470 + -2.2 675,542 + +0.4 675,542 + +0.4 675,542 + +0.7 675,542 + +0.4 675,543 - +0.9 675,573 + -0.5 675,573 + -0.1 675,702 - PfGW456L13_584 0.17 +0.3 675,792 + PfGW456L13_584 0.23 +0.0 675,792 + PfGW456L13_584 0.23 -0.9 675,793 - PfGW456L13_584 0.23 -0.1 675,793 - PfGW456L13_584 0.23 +1.7 675,793 - PfGW456L13_584 0.23 +0.2 675,895 + PfGW456L13_584 0.31 -0.2 675,895 + PfGW456L13_584 0.31 +0.3 675,896 - PfGW456L13_584 0.31 +0.2 675,896 - PfGW456L13_584 0.31 -0.1 675,896 - PfGW456L13_584 0.31 +0.3 675,896 - PfGW456L13_584 0.31 +0.6 675,987 - PfGW456L13_584 0.38 +0.5 676,278 + PfGW456L13_584 0.59 -1.0 676,278 + PfGW456L13_584 0.59 +0.6 676,393 - PfGW456L13_584 0.68 +0.4 676,393 - PfGW456L13_584 0.68 -0.5 676,410 - PfGW456L13_584 0.69 +1.0 676,410 - PfGW456L13_584 0.69 +0.6 676,410 - PfGW456L13_584 0.69 -0.2 676,410 - PfGW456L13_584 0.69 -1.9 676,410 - PfGW456L13_584 0.69 +0.6 676,410 - PfGW456L13_584 0.69 -0.1 676,448 + PfGW456L13_584 0.72 +0.0 676,448 + PfGW456L13_584 0.72 +0.9 676,448 + PfGW456L13_584 0.72 -0.6 676,448 + PfGW456L13_584 0.72 -0.2 676,449 - PfGW456L13_584 0.72 +2.0 676,494 + PfGW456L13_584 0.76 -0.3 676,494 + PfGW456L13_584 0.76 +0.5 676,643 + PfGW456L13_584 0.87 +0.1 676,812 + +0.4 676,812 + -0.0 676,812 + +0.6 676,813 - -0.6 676,813 - +0.7 676,971 + +0.1 676,971 + +0.3 676,972 - +1.3 677,086 + PfGW456L13_585 0.14 -0.5 677,087 - PfGW456L13_585 0.14 +0.1 677,087 - PfGW456L13_585 0.14 +0.7 677,170 + PfGW456L13_585 0.19 -0.3 677,170 + PfGW456L13_585 0.19 -1.0 677,170 + PfGW456L13_585 0.19 -0.9 677,171 - PfGW456L13_585 0.19 -0.2 677,191 + PfGW456L13_585 0.20 -0.9 677,191 + PfGW456L13_585 0.20 -0.6 677,191 + PfGW456L13_585 0.20 -0.8 677,192 - PfGW456L13_585 0.20 +0.2 677,192 - PfGW456L13_585 0.20 +0.2 677,192 - PfGW456L13_585 0.20 +0.3 677,192 - PfGW456L13_585 0.20 +0.6 677,192 - PfGW456L13_585 0.20 +0.3 677,192 - PfGW456L13_585 0.20 -0.3 677,262 - PfGW456L13_585 0.24 +1.1 677,301 + PfGW456L13_585 0.26 +1.6 677,302 - PfGW456L13_585 0.26 +0.5 677,302 - PfGW456L13_585 0.26 +1.1 677,585 + PfGW456L13_585 0.42 -0.4 677,585 + PfGW456L13_585 0.42 -0.0 677,585 + PfGW456L13_585 0.42 -0.0 677,585 + +2.8 677,585 + PfGW456L13_585 0.42 -0.7 677,585 + PfGW456L13_585 0.42 -1.8 677,585 + PfGW456L13_585 0.42 -0.8 677,585 + PfGW456L13_585 0.42 -0.2 677,585 + PfGW456L13_585 0.42 +0.6 677,585 + PfGW456L13_585 0.42 -0.2 677,585 + PfGW456L13_585 0.42 -0.5 677,585 + PfGW456L13_585 0.42 +0.5 677,586 - PfGW456L13_585 0.42 +0.4 677,586 - PfGW456L13_585 0.42 +0.7 677,586 - PfGW456L13_585 0.42 +0.3 677,586 - PfGW456L13_585 0.42 +1.1 677,586 - PfGW456L13_585 0.42 +0.0 677,586 - PfGW456L13_585 0.42 -1.1 677,586 - PfGW456L13_585 0.42 +0.1 677,586 - PfGW456L13_585 0.42 -0.0 677,586 - PfGW456L13_585 0.42 -0.2 677,586 - PfGW456L13_585 0.42 -1.2 677,586 - PfGW456L13_585 0.42 +0.1 677,586 - PfGW456L13_585 0.42 +0.6 677,586 - PfGW456L13_585 0.42 +0.4 677,586 - PfGW456L13_585 0.42 -0.2 677,685 + PfGW456L13_585 0.48 -0.2 677,745 + PfGW456L13_585 0.51 -0.0
Or see this region's nucleotide sequence