Experiment: Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_405 and PfGW456L13_406 are separated by 127 nucleotides PfGW456L13_406 and PfGW456L13_407 are separated by 128 nucleotides PfGW456L13_407 and PfGW456L13_408 are separated by 92 nucleotides PfGW456L13_408 and PfGW456L13_409 overlap by 4 nucleotides
PfGW456L13_405 - FIG001957: putative hydrolase, at 467,027 to 467,689
_405
PfGW456L13_406 - FIG00954962: hypothetical protein, at 467,817 to 468,257
_406
PfGW456L13_407 - Hydrogen peroxide-inducible genes activator, at 468,386 to 469,273
_407
PfGW456L13_408 - Formate dehydrogenase chain D (EC 1.2.1.2), at 469,366 to 470,205
_408
PfGW456L13_409 - Putative formate dehydrogenase oxidoreductase protein, at 470,202 to 472,550
_409
Position (kb) 468
469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 467.426 kb on + strand, within PfGW456L13_405 at 467.426 kb on + strand, within PfGW456L13_405 at 467.456 kb on + strand, within PfGW456L13_405 at 467.456 kb on + strand, within PfGW456L13_405 at 467.456 kb on + strand, within PfGW456L13_405 at 467.457 kb on - strand, within PfGW456L13_405 at 467.687 kb on + strand at 467.818 kb on + strand at 467.818 kb on + strand at 467.818 kb on + strand at 467.819 kb on - strand at 467.819 kb on - strand at 467.819 kb on - strand at 467.848 kb on + strand at 467.848 kb on + strand at 467.849 kb on - strand at 467.849 kb on - strand at 467.902 kb on + strand, within PfGW456L13_406 at 467.902 kb on + strand, within PfGW456L13_406 at 467.902 kb on + strand, within PfGW456L13_406 at 467.902 kb on + strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.903 kb on - strand, within PfGW456L13_406 at 467.920 kb on + strand, within PfGW456L13_406 at 467.921 kb on - strand, within PfGW456L13_406 at 468.299 kb on + strand at 468.299 kb on + strand at 468.299 kb on + strand at 468.299 kb on + strand at 468.300 kb on - strand at 468.300 kb on - strand at 468.300 kb on - strand at 468.317 kb on + strand at 468.317 kb on + strand at 468.317 kb on + strand at 468.318 kb on - strand at 468.352 kb on + strand at 468.352 kb on + strand at 468.352 kb on + strand at 468.597 kb on + strand, within PfGW456L13_407 at 468.598 kb on - strand, within PfGW456L13_407 at 468.608 kb on + strand, within PfGW456L13_407 at 468.608 kb on + strand, within PfGW456L13_407 at 468.609 kb on - strand, within PfGW456L13_407 at 468.675 kb on + strand, within PfGW456L13_407 at 468.675 kb on + strand, within PfGW456L13_407 at 468.676 kb on - strand, within PfGW456L13_407 at 468.822 kb on - strand, within PfGW456L13_407 at 468.822 kb on - strand, within PfGW456L13_407 at 468.890 kb on + strand, within PfGW456L13_407 at 468.890 kb on + strand, within PfGW456L13_407 at 468.890 kb on + strand, within PfGW456L13_407 at 468.891 kb on - strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.003 kb on + strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.004 kb on - strand, within PfGW456L13_407 at 469.068 kb on + strand, within PfGW456L13_407 at 469.069 kb on - strand, within PfGW456L13_407 at 469.247 kb on + strand at 469.247 kb on + strand at 469.248 kb on - strand at 469.338 kb on + strand at 469.339 kb on - strand at 469.339 kb on - strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.435 kb on + strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.436 kb on - strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.441 kb on + strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.442 kb on - strand at 469.443 kb on + strand at 469.443 kb on + strand at 469.443 kb on + strand at 469.443 kb on + strand at 469.444 kb on - strand at 469.457 kb on - strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.618 kb on + strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.619 kb on - strand, within PfGW456L13_408 at 469.654 kb on + strand, within PfGW456L13_408 at 469.784 kb on + strand, within PfGW456L13_408 at 469.784 kb on + strand, within PfGW456L13_408 at 469.784 kb on + strand, within PfGW456L13_408 at 469.785 kb on - strand, within PfGW456L13_408 at 469.785 kb on - strand, within PfGW456L13_408 at 470.054 kb on + strand, within PfGW456L13_408 at 470.055 kb on - strand, within PfGW456L13_408 at 470.055 kb on - strand, within PfGW456L13_408 at 470.176 kb on + strand at 470.177 kb on - strand at 470.177 kb on - strand at 470.253 kb on + strand at 470.253 kb on + strand at 470.253 kb on + strand at 470.254 kb on - strand at 470.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml remove 467,426 + PfGW456L13_405 0.60 -0.3 467,426 + PfGW456L13_405 0.60 -0.6 467,456 + PfGW456L13_405 0.65 +0.4 467,456 + PfGW456L13_405 0.65 -0.4 467,456 + PfGW456L13_405 0.65 +0.5 467,457 - PfGW456L13_405 0.65 +1.5 467,687 + -0.3 467,818 + +1.2 467,818 + +0.2 467,818 + +0.8 467,819 - -0.4 467,819 - +0.2 467,819 - +0.0 467,848 + +0.2 467,848 + -0.8 467,849 - -0.1 467,849 - +0.1 467,902 + PfGW456L13_406 0.19 +0.4 467,902 + PfGW456L13_406 0.19 -1.0 467,902 + PfGW456L13_406 0.19 -0.1 467,902 + PfGW456L13_406 0.19 -0.3 467,903 - PfGW456L13_406 0.20 -0.5 467,903 - PfGW456L13_406 0.20 -1.6 467,903 - PfGW456L13_406 0.20 -0.3 467,903 - PfGW456L13_406 0.20 -0.5 467,903 - PfGW456L13_406 0.20 -0.6 467,920 + PfGW456L13_406 0.23 -0.1 467,921 - PfGW456L13_406 0.24 -0.3 468,299 + +0.5 468,299 + -1.1 468,299 + +0.7 468,299 + +0.8 468,300 - +1.1 468,300 - +0.5 468,300 - -0.2 468,317 + -0.5 468,317 + -0.9 468,317 + +1.0 468,318 - -0.1 468,352 + +0.5 468,352 + -1.1 468,352 + -0.1 468,597 + PfGW456L13_407 0.24 -1.2 468,598 - PfGW456L13_407 0.24 -0.8 468,608 + PfGW456L13_407 0.25 -0.2 468,608 + PfGW456L13_407 0.25 -0.2 468,609 - PfGW456L13_407 0.25 -0.8 468,675 + PfGW456L13_407 0.33 -0.3 468,675 + PfGW456L13_407 0.33 -0.8 468,676 - PfGW456L13_407 0.33 +0.7 468,822 - PfGW456L13_407 0.49 +0.0 468,822 - PfGW456L13_407 0.49 -0.8 468,890 + PfGW456L13_407 0.57 -0.5 468,890 + PfGW456L13_407 0.57 +1.0 468,890 + PfGW456L13_407 0.57 +2.5 468,891 - PfGW456L13_407 0.57 -0.2 469,003 + PfGW456L13_407 0.69 -0.4 469,003 + PfGW456L13_407 0.69 -0.5 469,003 + PfGW456L13_407 0.69 -0.8 469,003 + PfGW456L13_407 0.69 +0.5 469,004 - PfGW456L13_407 0.70 +1.2 469,004 - PfGW456L13_407 0.70 -2.1 469,004 - PfGW456L13_407 0.70 -0.2 469,004 - PfGW456L13_407 0.70 +0.2 469,004 - PfGW456L13_407 0.70 -0.5 469,068 + PfGW456L13_407 0.77 +0.2 469,069 - PfGW456L13_407 0.77 +0.5 469,247 + -0.1 469,247 + +0.2 469,248 - +0.4 469,338 + -0.1 469,339 - +0.7 469,339 - +0.3 469,435 + -0.8 469,435 + -0.2 469,435 + -1.3 469,435 + -0.9 469,435 + -1.2 469,435 + -2.1 469,436 - -0.1 469,436 - -3.4 469,436 - +0.1 469,436 - -0.3 469,436 - -1.5 469,436 - -0.3 469,436 - -0.5 469,436 - -0.4 469,436 - +0.2 469,441 + +0.1 469,441 + +0.5 469,441 + +0.3 469,441 + -0.0 469,441 + -1.8 469,441 + +0.8 469,441 + -0.3 469,441 + +1.3 469,441 + +0.1 469,442 - -0.1 469,442 - -1.1 469,442 - -0.8 469,442 - -0.5 469,442 - -1.3 469,442 - -0.3 469,442 - -0.7 469,443 + +0.3 469,443 + -0.6 469,443 + -2.6 469,443 + -1.3 469,444 - -0.8 469,457 - PfGW456L13_408 0.11 -0.4 469,618 + PfGW456L13_408 0.30 +0.0 469,618 + PfGW456L13_408 0.30 -0.9 469,618 + PfGW456L13_408 0.30 +0.9 469,618 + PfGW456L13_408 0.30 -0.4 469,618 + PfGW456L13_408 0.30 -1.6 469,618 + PfGW456L13_408 0.30 +0.9 469,618 + PfGW456L13_408 0.30 +0.4 469,618 + PfGW456L13_408 0.30 +0.8 469,619 - PfGW456L13_408 0.30 +0.5 469,619 - PfGW456L13_408 0.30 -0.5 469,619 - PfGW456L13_408 0.30 -0.5 469,619 - PfGW456L13_408 0.30 +0.5 469,619 - -0.8 469,619 - PfGW456L13_408 0.30 -0.0 469,619 - PfGW456L13_408 0.30 -0.5 469,619 - PfGW456L13_408 0.30 -0.9 469,619 - PfGW456L13_408 0.30 -0.3 469,654 + PfGW456L13_408 0.34 +0.2 469,784 + PfGW456L13_408 0.50 +0.3 469,784 + PfGW456L13_408 0.50 -1.3 469,784 + PfGW456L13_408 0.50 -0.7 469,785 - PfGW456L13_408 0.50 +0.9 469,785 - PfGW456L13_408 0.50 -0.1 470,054 + PfGW456L13_408 0.82 -0.0 470,055 - PfGW456L13_408 0.82 -0.3 470,055 - PfGW456L13_408 0.82 -0.3 470,176 + +0.8 470,177 - -0.3 470,177 - +0.0 470,253 + -0.3 470,253 + +1.0 470,253 + -0.8 470,254 - -0.3 470,254 - +0.0
Or see this region's nucleotide sequence