Experiment: Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2606 and PfGW456L13_2607 are separated by 125 nucleotides PfGW456L13_2607 and PfGW456L13_2608 are separated by 2 nucleotides PfGW456L13_2608 and PfGW456L13_2609 are separated by 250 nucleotides
PfGW456L13_2606 - Inner membrane component of tripartite multidrug resistance system, at 2,898,874 to 2,900,406
_2606
PfGW456L13_2607 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 2,900,532 to 2,901,278
_2607
PfGW456L13_2608 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 2,901,281 to 2,901,784
_2608
PfGW456L13_2609 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 2,902,035 to 2,903,732
_2609
Position (kb)
2901
2902 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2900.299 kb on + strand at 2900.299 kb on + strand at 2900.300 kb on - strand at 2900.300 kb on - strand at 2900.300 kb on - strand at 2900.300 kb on - strand at 2900.300 kb on - strand at 2900.300 kb on - strand at 2900.300 kb on - strand at 2901.535 kb on - strand, within PfGW456L13_2608 at 2901.691 kb on - strand, within PfGW456L13_2608 at 2901.691 kb on - strand, within PfGW456L13_2608 at 2901.908 kb on + strand at 2901.908 kb on + strand at 2901.915 kb on + strand at 2901.918 kb on + strand at 2901.918 kb on + strand at 2901.918 kb on + strand at 2901.919 kb on - strand at 2901.919 kb on - strand at 2901.932 kb on + strand at 2901.932 kb on + strand at 2901.933 kb on - strand at 2901.953 kb on + strand at 2902.019 kb on + strand at 2902.019 kb on + strand at 2902.019 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml remove 2,900,299 + +1.2 2,900,299 + -0.1 2,900,300 - -0.2 2,900,300 - +0.1 2,900,300 - -0.8 2,900,300 - +0.7 2,900,300 - -0.8 2,900,300 - -0.5 2,900,300 - -0.5 2,901,535 - PfGW456L13_2608 0.50 -2.8 2,901,691 - PfGW456L13_2608 0.81 -2.3 2,901,691 - PfGW456L13_2608 0.81 -0.8 2,901,908 + +0.2 2,901,908 + +0.1 2,901,915 + -0.8 2,901,918 + +0.8 2,901,918 + +0.4 2,901,918 + -0.9 2,901,919 - -1.8 2,901,919 - -2.0 2,901,932 + +0.1 2,901,932 + +1.3 2,901,933 - +0.1 2,901,953 + -1.2 2,902,019 + +0.3 2,902,019 + +0.5 2,902,019 + -0.1
Or see this region's nucleotide sequence