Experiment: Vancomycin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2384 and PfGW456L13_2385 are separated by 126 nucleotides PfGW456L13_2385 and PfGW456L13_2386 are separated by 195 nucleotides
PfGW456L13_2384 - TonB-dependent siderophore receptor, at 2,639,077 to 2,641,494
_2384
PfGW456L13_2385 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 2,641,621 to 2,643,270
_2385
PfGW456L13_2386 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 2,643,466 to 2,644,353
_2386
Position (kb)
2641
2642
2643
2644 Strain fitness (log2 ratio)
-2
-1
0
1 at 2640.776 kb on + strand, within PfGW456L13_2384 at 2640.776 kb on + strand, within PfGW456L13_2384 at 2640.776 kb on + strand, within PfGW456L13_2384 at 2640.777 kb on - strand, within PfGW456L13_2384 at 2640.872 kb on + strand, within PfGW456L13_2384 at 2640.872 kb on + strand, within PfGW456L13_2384 at 2640.873 kb on - strand, within PfGW456L13_2384 at 2640.873 kb on - strand, within PfGW456L13_2384 at 2640.873 kb on - strand, within PfGW456L13_2384 at 2640.902 kb on + strand, within PfGW456L13_2384 at 2640.903 kb on - strand, within PfGW456L13_2384 at 2640.903 kb on - strand, within PfGW456L13_2384 at 2641.021 kb on + strand, within PfGW456L13_2384 at 2641.022 kb on - strand, within PfGW456L13_2384 at 2641.022 kb on - strand, within PfGW456L13_2384 at 2641.022 kb on - strand, within PfGW456L13_2384 at 2641.022 kb on - strand, within PfGW456L13_2384 at 2641.022 kb on - strand, within PfGW456L13_2384 at 2641.058 kb on + strand, within PfGW456L13_2384 at 2641.058 kb on + strand, within PfGW456L13_2384 at 2641.058 kb on + strand, within PfGW456L13_2384 at 2641.058 kb on + strand, within PfGW456L13_2384 at 2641.059 kb on - strand, within PfGW456L13_2384 at 2641.059 kb on - strand, within PfGW456L13_2384 at 2641.059 kb on - strand at 2641.387 kb on - strand at 2641.482 kb on + strand at 2641.514 kb on + strand at 2641.514 kb on + strand at 2641.515 kb on - strand at 2641.515 kb on - strand at 2641.515 kb on - strand at 2641.515 kb on - strand at 2641.691 kb on + strand at 2642.000 kb on + strand, within PfGW456L13_2385 at 2642.001 kb on - strand, within PfGW456L13_2385 at 2642.004 kb on - strand, within PfGW456L13_2385 at 2643.026 kb on + strand, within PfGW456L13_2385 at 2643.027 kb on - strand, within PfGW456L13_2385 at 2643.309 kb on - strand at 2643.478 kb on + strand at 2643.479 kb on - strand at 2643.653 kb on + strand, within PfGW456L13_2386 at 2643.653 kb on + strand, within PfGW456L13_2386 at 2643.674 kb on + strand, within PfGW456L13_2386 at 2643.674 kb on + strand, within PfGW456L13_2386 at 2643.695 kb on + strand, within PfGW456L13_2386 at 2643.695 kb on + strand, within PfGW456L13_2386 at 2643.695 kb on + strand, within PfGW456L13_2386 at 2643.695 kb on + strand, within PfGW456L13_2386 at 2643.695 kb on + strand, within PfGW456L13_2386 at 2643.695 kb on + strand, within PfGW456L13_2386 at 2643.696 kb on - strand, within PfGW456L13_2386 at 2643.696 kb on - strand, within PfGW456L13_2386 at 2643.696 kb on - strand, within PfGW456L13_2386 at 2643.696 kb on - strand, within PfGW456L13_2386 at 2643.696 kb on - strand, within PfGW456L13_2386 at 2643.740 kb on + strand, within PfGW456L13_2386 at 2643.740 kb on + strand, within PfGW456L13_2386 at 2643.740 kb on + strand, within PfGW456L13_2386 at 2643.741 kb on - strand, within PfGW456L13_2386 at 2643.741 kb on - strand, within PfGW456L13_2386 at 2643.747 kb on - strand, within PfGW456L13_2386 at 2643.764 kb on + strand, within PfGW456L13_2386 at 2643.764 kb on + strand, within PfGW456L13_2386 at 2643.764 kb on + strand, within PfGW456L13_2386 at 2643.764 kb on + strand, within PfGW456L13_2386 at 2643.764 kb on + strand, within PfGW456L13_2386 at 2643.764 kb on + strand, within PfGW456L13_2386 at 2643.765 kb on - strand, within PfGW456L13_2386 at 2643.765 kb on - strand, within PfGW456L13_2386 at 2643.765 kb on - strand, within PfGW456L13_2386 at 2643.765 kb on - strand, within PfGW456L13_2386 at 2643.881 kb on + strand, within PfGW456L13_2386 at 2643.882 kb on - strand, within PfGW456L13_2386 at 2643.917 kb on + strand, within PfGW456L13_2386 at 2643.917 kb on + strand, within PfGW456L13_2386 at 2643.918 kb on - strand, within PfGW456L13_2386 at 2644.052 kb on + strand, within PfGW456L13_2386 at 2644.053 kb on - strand, within PfGW456L13_2386 at 2644.215 kb on + strand, within PfGW456L13_2386 at 2644.254 kb on + strand, within PfGW456L13_2386 at 2644.256 kb on + strand, within PfGW456L13_2386 at 2644.256 kb on + strand, within PfGW456L13_2386 at 2644.257 kb on - strand, within PfGW456L13_2386 at 2644.257 kb on - strand, within PfGW456L13_2386
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml remove 2,640,776 + PfGW456L13_2384 0.70 +0.5 2,640,776 + PfGW456L13_2384 0.70 -0.7 2,640,776 + PfGW456L13_2384 0.70 -0.0 2,640,777 - PfGW456L13_2384 0.70 +0.4 2,640,872 + PfGW456L13_2384 0.74 -0.9 2,640,872 + PfGW456L13_2384 0.74 -2.7 2,640,873 - PfGW456L13_2384 0.74 -1.9 2,640,873 - PfGW456L13_2384 0.74 -1.5 2,640,873 - PfGW456L13_2384 0.74 -0.5 2,640,902 + PfGW456L13_2384 0.75 +0.0 2,640,903 - PfGW456L13_2384 0.76 -2.4 2,640,903 - PfGW456L13_2384 0.76 -0.1 2,641,021 + PfGW456L13_2384 0.80 +0.9 2,641,022 - PfGW456L13_2384 0.80 -1.1 2,641,022 - PfGW456L13_2384 0.80 -0.3 2,641,022 - PfGW456L13_2384 0.80 -0.6 2,641,022 - PfGW456L13_2384 0.80 +0.1 2,641,022 - PfGW456L13_2384 0.80 -0.7 2,641,058 + PfGW456L13_2384 0.82 +1.0 2,641,058 + PfGW456L13_2384 0.82 +0.5 2,641,058 + PfGW456L13_2384 0.82 +0.7 2,641,058 + PfGW456L13_2384 0.82 -1.1 2,641,059 - PfGW456L13_2384 0.82 -2.3 2,641,059 - PfGW456L13_2384 0.82 +0.2 2,641,059 - -0.1 2,641,387 - -2.3 2,641,482 + -0.4 2,641,514 + -1.4 2,641,514 + -0.7 2,641,515 - -0.5 2,641,515 - -0.6 2,641,515 - +0.8 2,641,515 - +0.5 2,641,691 + -1.7 2,642,000 + PfGW456L13_2385 0.23 -2.1 2,642,001 - PfGW456L13_2385 0.23 -1.9 2,642,004 - PfGW456L13_2385 0.23 -1.3 2,643,026 + PfGW456L13_2385 0.85 -1.7 2,643,027 - PfGW456L13_2385 0.85 -2.7 2,643,309 - +0.1 2,643,478 + +0.2 2,643,479 - +0.1 2,643,653 + PfGW456L13_2386 0.21 +0.5 2,643,653 + PfGW456L13_2386 0.21 -0.6 2,643,674 + PfGW456L13_2386 0.23 -0.1 2,643,674 + PfGW456L13_2386 0.23 -1.7 2,643,695 + PfGW456L13_2386 0.26 -0.1 2,643,695 + PfGW456L13_2386 0.26 +0.2 2,643,695 + PfGW456L13_2386 0.26 -0.4 2,643,695 + PfGW456L13_2386 0.26 -0.4 2,643,695 + PfGW456L13_2386 0.26 -0.4 2,643,695 + PfGW456L13_2386 0.26 +0.1 2,643,696 - PfGW456L13_2386 0.26 -0.8 2,643,696 - PfGW456L13_2386 0.26 +0.7 2,643,696 - PfGW456L13_2386 0.26 -0.3 2,643,696 - PfGW456L13_2386 0.26 +0.5 2,643,696 - PfGW456L13_2386 0.26 +0.3 2,643,740 + PfGW456L13_2386 0.31 +0.2 2,643,740 + PfGW456L13_2386 0.31 +0.4 2,643,740 + PfGW456L13_2386 0.31 -1.8 2,643,741 - PfGW456L13_2386 0.31 -1.1 2,643,741 - PfGW456L13_2386 0.31 -0.3 2,643,747 - PfGW456L13_2386 0.32 +0.1 2,643,764 + PfGW456L13_2386 0.34 +0.1 2,643,764 + PfGW456L13_2386 0.34 -0.6 2,643,764 + PfGW456L13_2386 0.34 -0.4 2,643,764 + PfGW456L13_2386 0.34 +0.0 2,643,764 + PfGW456L13_2386 0.34 -1.6 2,643,764 + PfGW456L13_2386 0.34 -1.7 2,643,765 - PfGW456L13_2386 0.34 +0.6 2,643,765 - PfGW456L13_2386 0.34 -0.4 2,643,765 - PfGW456L13_2386 0.34 +1.6 2,643,765 - PfGW456L13_2386 0.34 +1.4 2,643,881 + PfGW456L13_2386 0.47 +0.1 2,643,882 - PfGW456L13_2386 0.47 +0.2 2,643,917 + PfGW456L13_2386 0.51 -0.1 2,643,917 + PfGW456L13_2386 0.51 -0.1 2,643,918 - PfGW456L13_2386 0.51 -0.5 2,644,052 + PfGW456L13_2386 0.66 -0.2 2,644,053 - PfGW456L13_2386 0.66 -0.6 2,644,215 + PfGW456L13_2386 0.84 +0.9 2,644,254 + PfGW456L13_2386 0.89 +0.0 2,644,256 + PfGW456L13_2386 0.89 -0.2 2,644,256 + PfGW456L13_2386 0.89 -0.2 2,644,257 - PfGW456L13_2386 0.89 +1.2 2,644,257 - PfGW456L13_2386 0.89 -0.4
Or see this region's nucleotide sequence