Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_168

Experiment: Vancomycin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_167 and PfGW456L13_168 are separated by 3 nucleotidesPfGW456L13_168 and PfGW456L13_169 are separated by 167 nucleotides PfGW456L13_167 - Flagellar motor rotation protein MotB, at 190,953 to 191,999 _167 PfGW456L13_168 - Flagellar motor rotation protein MotA, at 192,003 to 192,854 _168 PfGW456L13_169 - Predicted signal transduction protein, at 193,022 to 194,560 _169 Position (kb) 192 193Strain fitness (log2 ratio) -1 0 1at 191.380 kb on + strand, within PfGW456L13_167at 191.380 kb on + strand, within PfGW456L13_167at 191.380 kb on + strand, within PfGW456L13_167at 191.380 kb on + strand, within PfGW456L13_167at 191.380 kb on + strand, within PfGW456L13_167at 191.381 kb on - strand, within PfGW456L13_167at 191.381 kb on - strand, within PfGW456L13_167at 191.381 kb on - strand, within PfGW456L13_167at 191.471 kb on - strand, within PfGW456L13_167at 191.782 kb on + strand, within PfGW456L13_167at 191.782 kb on + strand, within PfGW456L13_167at 191.783 kb on - strand, within PfGW456L13_167at 191.783 kb on - strand, within PfGW456L13_167at 191.783 kb on - strand, within PfGW456L13_167at 191.991 kb on - strandat 192.004 kb on + strandat 192.058 kb on + strandat 192.142 kb on + strand, within PfGW456L13_168at 192.143 kb on - strand, within PfGW456L13_168at 192.218 kb on + strand, within PfGW456L13_168at 192.249 kb on + strand, within PfGW456L13_168at 192.249 kb on + strand, within PfGW456L13_168at 192.249 kb on + strand, within PfGW456L13_168at 192.250 kb on - strand, within PfGW456L13_168at 192.250 kb on - strand, within PfGW456L13_168at 192.250 kb on - strand, within PfGW456L13_168at 192.250 kb on - strand, within PfGW456L13_168at 192.309 kb on - strand, within PfGW456L13_168at 192.472 kb on + strand, within PfGW456L13_168at 192.511 kb on - strand, within PfGW456L13_168at 192.521 kb on - strand, within PfGW456L13_168at 192.521 kb on - strand, within PfGW456L13_168at 192.610 kb on + strand, within PfGW456L13_168at 192.611 kb on - strand, within PfGW456L13_168at 192.611 kb on - strand, within PfGW456L13_168at 192.611 kb on - strand, within PfGW456L13_168at 192.634 kb on + strand, within PfGW456L13_168at 192.634 kb on + strand, within PfGW456L13_168at 192.634 kb on + strand, within PfGW456L13_168at 192.635 kb on - strand, within PfGW456L13_168at 192.635 kb on - strand, within PfGW456L13_168at 192.700 kb on + strand, within PfGW456L13_168at 192.700 kb on + strand, within PfGW456L13_168at 192.768 kb on + strand, within PfGW456L13_168at 192.768 kb on + strand, within PfGW456L13_168at 192.768 kb on + strand, within PfGW456L13_168at 192.768 kb on + strand, within PfGW456L13_168at 192.768 kb on + strand, within PfGW456L13_168at 192.769 kb on - strandat 192.769 kb on - strandat 192.825 kb on + strandat 192.825 kb on + strandat 192.826 kb on - strandat 192.843 kb on - strandat 192.848 kb on + strandat 192.849 kb on - strandat 192.854 kb on + strandat 192.854 kb on + strandat 192.854 kb on + strandat 192.854 kb on + strandat 192.854 kb on + strandat 192.854 kb on + strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.855 kb on - strandat 192.859 kb on + strandat 192.871 kb on + strandat 192.871 kb on + strandat 192.871 kb on + strandat 192.871 kb on + strandat 192.871 kb on + strandat 192.872 kb on - strandat 192.872 kb on - strandat 192.872 kb on - strandat 192.893 kb on + strandat 192.893 kb on + strandat 192.921 kb on + strandat 192.921 kb on + strandat 192.922 kb on - strandat 192.922 kb on - strandat 192.922 kb on - strandat 192.947 kb on + strandat 192.947 kb on + strandat 192.947 kb on + strandat 192.948 kb on - strandat 192.949 kb on + strandat 192.950 kb on - strandat 192.970 kb on + strandat 192.971 kb on - strandat 192.995 kb on + strandat 192.995 kb on + strandat 192.995 kb on + strandat 192.995 kb on + strandat 192.995 kb on + strandat 192.996 kb on - strandat 192.996 kb on - strandat 192.996 kb on - strandat 192.996 kb on - strandat 193.095 kb on + strandat 193.095 kb on + strandat 193.095 kb on + strandat 193.096 kb on - strandat 193.096 kb on - strandat 193.096 kb on - strandat 193.096 kb on - strandat 193.150 kb on + strandat 193.546 kb on + strand, within PfGW456L13_169at 193.590 kb on + strand, within PfGW456L13_169at 193.659 kb on - strand, within PfGW456L13_169at 193.795 kb on + strand, within PfGW456L13_169at 193.795 kb on + strand, within PfGW456L13_169at 193.796 kb on - strand, within PfGW456L13_169at 193.796 kb on - strand, within PfGW456L13_169at 193.796 kb on - strand, within PfGW456L13_169

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml
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191,380 + PfGW456L13_167 0.41 -0.4
191,380 + PfGW456L13_167 0.41 +1.2
191,380 + PfGW456L13_167 0.41 +0.5
191,380 + PfGW456L13_167 0.41 +0.7
191,380 + PfGW456L13_167 0.41 +0.3
191,381 - PfGW456L13_167 0.41 -0.2
191,381 - PfGW456L13_167 0.41 -1.4
191,381 - PfGW456L13_167 0.41 -0.1
191,471 - PfGW456L13_167 0.49 -0.7
191,782 + PfGW456L13_167 0.79 -0.1
191,782 + PfGW456L13_167 0.79 +0.4
191,783 - PfGW456L13_167 0.79 -0.5
191,783 - PfGW456L13_167 0.79 +0.2
191,783 - PfGW456L13_167 0.79 +0.3
191,991 - -0.8
192,004 + +0.2
192,058 + +1.0
192,142 + PfGW456L13_168 0.16 -1.2
192,143 - PfGW456L13_168 0.16 -0.8
192,218 + PfGW456L13_168 0.25 -1.7
192,249 + PfGW456L13_168 0.29 -0.9
192,249 + PfGW456L13_168 0.29 -0.6
192,249 + PfGW456L13_168 0.29 -0.9
192,250 - PfGW456L13_168 0.29 -0.1
192,250 - PfGW456L13_168 0.29 +0.4
192,250 - PfGW456L13_168 0.29 +0.2
192,250 - PfGW456L13_168 0.29 +1.2
192,309 - PfGW456L13_168 0.36 +0.5
192,472 + PfGW456L13_168 0.55 +1.0
192,511 - PfGW456L13_168 0.60 +0.1
192,521 - PfGW456L13_168 0.61 -0.4
192,521 - PfGW456L13_168 0.61 +0.5
192,610 + PfGW456L13_168 0.71 +0.5
192,611 - PfGW456L13_168 0.71 +0.2
192,611 - PfGW456L13_168 0.71 -0.4
192,611 - PfGW456L13_168 0.71 -0.1
192,634 + PfGW456L13_168 0.74 -1.5
192,634 + PfGW456L13_168 0.74 +0.2
192,634 + PfGW456L13_168 0.74 -0.8
192,635 - PfGW456L13_168 0.74 +0.3
192,635 - PfGW456L13_168 0.74 -0.8
192,700 + PfGW456L13_168 0.82 -0.7
192,700 + PfGW456L13_168 0.82 +0.6
192,768 + PfGW456L13_168 0.90 +0.3
192,768 + PfGW456L13_168 0.90 +1.2
192,768 + PfGW456L13_168 0.90 +0.6
192,768 + PfGW456L13_168 0.90 +0.6
192,768 + PfGW456L13_168 0.90 +0.4
192,769 - +0.6
192,769 - -0.1
192,825 + +0.5
192,825 + +0.2
192,826 - +0.3
192,843 - +1.3
192,848 + -1.3
192,849 - -0.5
192,854 + -0.9
192,854 + -0.4
192,854 + +0.3
192,854 + +1.2
192,854 + -1.5
192,854 + +0.9
192,855 - -0.9
192,855 - -0.2
192,855 - -0.5
192,855 - +0.6
192,855 - -0.4
192,855 - -0.7
192,855 - +0.4
192,855 - +0.3
192,855 - -0.2
192,859 + -0.3
192,871 + +1.2
192,871 + -0.2
192,871 + +1.6
192,871 + +0.5
192,871 + -0.3
192,872 - -0.1
192,872 - -0.7
192,872 - -0.7
192,893 + +0.3
192,893 + -1.0
192,921 + +0.7
192,921 + +0.2
192,922 - -1.4
192,922 - -0.1
192,922 - +0.2
192,947 + +0.5
192,947 + -0.5
192,947 + -0.9
192,948 - +0.9
192,949 + +0.1
192,950 - -0.2
192,970 + +1.7
192,971 - -0.4
192,995 + -0.1
192,995 + +0.5
192,995 + +0.1
192,995 + +0.2
192,995 + -0.3
192,996 - -0.1
192,996 - +0.8
192,996 - +0.2
192,996 - +1.2
193,095 + -0.7
193,095 + -1.3
193,095 + -0.9
193,096 - +0.5
193,096 - -1.1
193,096 - +0.4
193,096 - -0.2
193,150 + -0.4
193,546 + PfGW456L13_169 0.34 -0.3
193,590 + PfGW456L13_169 0.37 -0.4
193,659 - PfGW456L13_169 0.41 +0.5
193,795 + PfGW456L13_169 0.50 +0.1
193,795 + PfGW456L13_169 0.50 +1.5
193,796 - PfGW456L13_169 0.50 +0.9
193,796 - PfGW456L13_169 0.50 -0.8
193,796 - PfGW456L13_169 0.50 -1.4

Or see this region's nucleotide sequence