Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1506

Experiment: Vancomycin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1504 and PfGW456L13_1505 are separated by 71 nucleotidesPfGW456L13_1505 and PfGW456L13_1506 are separated by 35 nucleotidesPfGW456L13_1506 and PfGW456L13_1507 overlap by 4 nucleotidesPfGW456L13_1507 and PfGW456L13_1508 are separated by 8 nucleotides PfGW456L13_1504 - Transcriptional regulator, LysR family, at 1,655,147 to 1,656,079 _1504 PfGW456L13_1505 - FIG028593: membrane protein, at 1,656,151 to 1,656,840 _1505 PfGW456L13_1506 - FIG003276: zinc-binding protein, at 1,656,876 to 1,657,076 _1506 PfGW456L13_1507 - Dephospho-CoA kinase (EC 2.7.1.24), at 1,657,073 to 1,657,684 _1507 PfGW456L13_1508 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 1,657,693 to 1,658,565 _1508 Position (kb) 1656 1657 1658Strain fitness (log2 ratio) -2 -1 0 1at 1655.899 kb on + strand, within PfGW456L13_1504at 1655.916 kb on + strand, within PfGW456L13_1504at 1655.948 kb on + strand, within PfGW456L13_1504at 1655.948 kb on + strand, within PfGW456L13_1504at 1655.948 kb on + strand, within PfGW456L13_1504at 1655.948 kb on + strand, within PfGW456L13_1504at 1655.948 kb on + strand, within PfGW456L13_1504at 1655.949 kb on - strand, within PfGW456L13_1504at 1655.949 kb on - strand, within PfGW456L13_1504at 1655.949 kb on - strand, within PfGW456L13_1504at 1655.957 kb on + strand, within PfGW456L13_1504at 1655.958 kb on - strand, within PfGW456L13_1504at 1655.958 kb on - strand, within PfGW456L13_1504at 1656.106 kb on + strandat 1656.106 kb on + strandat 1656.106 kb on + strandat 1656.107 kb on - strandat 1656.107 kb on - strandat 1656.107 kb on - strandat 1656.147 kb on - strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.205 kb on + strandat 1656.206 kb on - strandat 1656.206 kb on - strandat 1656.206 kb on - strandat 1656.206 kb on - strandat 1656.352 kb on + strand, within PfGW456L13_1505at 1656.353 kb on - strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.568 kb on + strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.569 kb on - strand, within PfGW456L13_1505at 1656.570 kb on + strand, within PfGW456L13_1505at 1656.570 kb on + strand, within PfGW456L13_1505at 1656.571 kb on - strand, within PfGW456L13_1505at 1656.571 kb on - strand, within PfGW456L13_1505at 1656.571 kb on - strand, within PfGW456L13_1505at 1656.641 kb on + strand, within PfGW456L13_1505at 1656.641 kb on + strand, within PfGW456L13_1505at 1656.671 kb on - strand, within PfGW456L13_1505at 1656.694 kb on + strand, within PfGW456L13_1505at 1656.695 kb on - strand, within PfGW456L13_1505at 1656.695 kb on - strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.698 kb on + strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.699 kb on - strand, within PfGW456L13_1505at 1656.799 kb on + strandat 1656.799 kb on + strandat 1656.799 kb on + strandat 1657.691 kb on - strandat 1657.719 kb on - strandat 1657.719 kb on - strandat 1657.730 kb on - strandat 1657.730 kb on - strandat 1657.775 kb on + strandat 1657.775 kb on + strandat 1657.776 kb on - strandat 1657.997 kb on + strand, within PfGW456L13_1508

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml
remove
1,655,899 + PfGW456L13_1504 0.81 -0.9
1,655,916 + PfGW456L13_1504 0.82 +1.4
1,655,948 + PfGW456L13_1504 0.86 -0.8
1,655,948 + PfGW456L13_1504 0.86 +0.3
1,655,948 + PfGW456L13_1504 0.86 +0.1
1,655,948 + PfGW456L13_1504 0.86 -1.1
1,655,948 + PfGW456L13_1504 0.86 +0.2
1,655,949 - PfGW456L13_1504 0.86 +1.1
1,655,949 - PfGW456L13_1504 0.86 +0.2
1,655,949 - PfGW456L13_1504 0.86 +0.9
1,655,957 + PfGW456L13_1504 0.87 +0.4
1,655,958 - PfGW456L13_1504 0.87 -2.4
1,655,958 - PfGW456L13_1504 0.87 +1.2
1,656,106 + +1.0
1,656,106 + -0.6
1,656,106 + +0.3
1,656,107 - -0.3
1,656,107 - +0.0
1,656,107 - +0.5
1,656,147 - +0.2
1,656,205 + -0.0
1,656,205 + -1.4
1,656,205 + +0.4
1,656,205 + -0.9
1,656,205 + +0.4
1,656,205 + -0.9
1,656,205 + +0.2
1,656,205 + -0.5
1,656,205 + -0.6
1,656,206 - +0.2
1,656,206 - +0.8
1,656,206 - +0.3
1,656,206 - +0.5
1,656,352 + PfGW456L13_1505 0.29 -2.4
1,656,353 - PfGW456L13_1505 0.29 -0.7
1,656,568 + PfGW456L13_1505 0.60 -0.1
1,656,568 + PfGW456L13_1505 0.60 -0.5
1,656,568 + PfGW456L13_1505 0.60 +0.2
1,656,568 + PfGW456L13_1505 0.60 +1.2
1,656,568 + PfGW456L13_1505 0.60 +0.6
1,656,568 + PfGW456L13_1505 0.60 +1.0
1,656,568 + PfGW456L13_1505 0.60 +0.6
1,656,568 + PfGW456L13_1505 0.60 +0.3
1,656,568 + PfGW456L13_1505 0.60 +0.3
1,656,569 - PfGW456L13_1505 0.61 +0.6
1,656,569 - PfGW456L13_1505 0.61 +0.6
1,656,569 - PfGW456L13_1505 0.61 +0.2
1,656,569 - PfGW456L13_1505 0.61 -0.9
1,656,569 - PfGW456L13_1505 0.61 -0.5
1,656,569 - PfGW456L13_1505 0.61 +1.1
1,656,569 - PfGW456L13_1505 0.61 +0.3
1,656,569 - PfGW456L13_1505 0.61 -0.2
1,656,570 + PfGW456L13_1505 0.61 +0.2
1,656,570 + PfGW456L13_1505 0.61 +1.4
1,656,571 - PfGW456L13_1505 0.61 -1.2
1,656,571 - PfGW456L13_1505 0.61 +0.7
1,656,571 - PfGW456L13_1505 0.61 -0.4
1,656,641 + PfGW456L13_1505 0.71 +1.1
1,656,641 + PfGW456L13_1505 0.71 -0.7
1,656,671 - PfGW456L13_1505 0.75 +0.9
1,656,694 + PfGW456L13_1505 0.79 -0.9
1,656,695 - PfGW456L13_1505 0.79 +1.2
1,656,695 - PfGW456L13_1505 0.79 +0.1
1,656,698 + PfGW456L13_1505 0.79 -0.7
1,656,698 + PfGW456L13_1505 0.79 -0.4
1,656,698 + PfGW456L13_1505 0.79 +0.8
1,656,698 + PfGW456L13_1505 0.79 +0.3
1,656,698 + PfGW456L13_1505 0.79 +0.1
1,656,698 + PfGW456L13_1505 0.79 +1.4
1,656,698 + PfGW456L13_1505 0.79 +0.7
1,656,698 + PfGW456L13_1505 0.79 +0.6
1,656,698 + PfGW456L13_1505 0.79 -0.4
1,656,698 + PfGW456L13_1505 0.79 -0.6
1,656,698 + PfGW456L13_1505 0.79 -0.4
1,656,698 + PfGW456L13_1505 0.79 -0.1
1,656,698 + PfGW456L13_1505 0.79 +0.4
1,656,698 + PfGW456L13_1505 0.79 -0.0
1,656,699 - PfGW456L13_1505 0.79 -0.6
1,656,699 - PfGW456L13_1505 0.79 +0.3
1,656,699 - PfGW456L13_1505 0.79 +1.3
1,656,699 - PfGW456L13_1505 0.79 +0.5
1,656,699 - PfGW456L13_1505 0.79 +0.1
1,656,699 - PfGW456L13_1505 0.79 -0.2
1,656,699 - PfGW456L13_1505 0.79 +1.1
1,656,699 - PfGW456L13_1505 0.79 -1.1
1,656,699 - PfGW456L13_1505 0.79 -1.2
1,656,699 - PfGW456L13_1505 0.79 -0.6
1,656,699 - PfGW456L13_1505 0.79 -0.2
1,656,699 - PfGW456L13_1505 0.79 +0.3
1,656,699 - PfGW456L13_1505 0.79 +0.6
1,656,699 - PfGW456L13_1505 0.79 +1.7
1,656,699 - PfGW456L13_1505 0.79 +0.1
1,656,799 + -1.4
1,656,799 + +0.8
1,656,799 + +0.4
1,657,691 - +0.3
1,657,719 - -1.2
1,657,719 - +0.3
1,657,730 - -0.3
1,657,730 - -0.6
1,657,775 + -0.2
1,657,775 + -1.5
1,657,776 - -0.1
1,657,997 + PfGW456L13_1508 0.35 -0.8

Or see this region's nucleotide sequence