Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_133

Experiment: Vancomycin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_132 and PfGW456L13_133 are separated by 68 nucleotidesPfGW456L13_133 and PfGW456L13_134 are separated by 224 nucleotides PfGW456L13_132 - Lysine decarboxylase family, at 148,722 to 149,309 _132 PfGW456L13_133 - FIG00956548: hypothetical protein, at 149,378 to 149,557 _133 PfGW456L13_134 - Protein containing transglutaminase-like domain, putative cysteine protease, at 149,782 to 150,672 _134 Position (kb) 149 150Strain fitness (log2 ratio) -2 -1 0 1 2at 148.415 kb on - strandat 148.449 kb on + strandat 148.449 kb on + strandat 148.450 kb on - strandat 148.450 kb on - strandat 148.504 kb on + strandat 148.504 kb on + strandat 148.504 kb on + strandat 148.505 kb on - strandat 148.505 kb on - strandat 148.505 kb on - strandat 148.534 kb on + strandat 148.534 kb on + strandat 148.535 kb on - strandat 148.535 kb on - strandat 148.635 kb on + strandat 148.635 kb on + strandat 148.636 kb on - strandat 148.636 kb on - strandat 148.636 kb on - strandat 148.660 kb on - strandat 148.688 kb on + strandat 148.744 kb on + strandat 148.744 kb on + strandat 148.745 kb on - strandat 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.839 kb on + strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 148.840 kb on - strand, within PfGW456L13_132at 149.142 kb on + strand, within PfGW456L13_132at 149.143 kb on - strand, within PfGW456L13_132at 149.276 kb on - strandat 149.336 kb on + strandat 149.336 kb on + strandat 149.336 kb on + strandat 149.337 kb on - strandat 149.389 kb on + strandat 149.389 kb on + strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.390 kb on - strandat 149.393 kb on + strandat 149.393 kb on + strandat 149.393 kb on + strandat 149.394 kb on - strandat 149.394 kb on - strandat 149.394 kb on - strandat 149.394 kb on - strandat 149.467 kb on + strand, within PfGW456L13_133at 149.467 kb on + strand, within PfGW456L13_133at 149.467 kb on + strand, within PfGW456L13_133at 149.468 kb on - strand, within PfGW456L13_133at 149.468 kb on - strand, within PfGW456L13_133at 149.734 kb on + strandat 149.734 kb on + strandat 150.047 kb on + strand, within PfGW456L13_134at 150.047 kb on + strand, within PfGW456L13_134at 150.048 kb on - strand, within PfGW456L13_134at 150.048 kb on - strand, within PfGW456L13_134at 150.073 kb on + strand, within PfGW456L13_134at 150.074 kb on - strand, within PfGW456L13_134at 150.074 kb on - strand, within PfGW456L13_134at 150.074 kb on - strand, within PfGW456L13_134at 150.136 kb on + strand, within PfGW456L13_134at 150.136 kb on + strand, within PfGW456L13_134at 150.136 kb on + strandat 150.137 kb on - strand, within PfGW456L13_134at 150.177 kb on + strand, within PfGW456L13_134at 150.178 kb on - strand, within PfGW456L13_134at 150.178 kb on - strand, within PfGW456L13_134at 150.277 kb on + strand, within PfGW456L13_134at 150.277 kb on + strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.278 kb on - strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.287 kb on + strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.288 kb on - strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.350 kb on + strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.351 kb on - strand, within PfGW456L13_134at 150.418 kb on + strand, within PfGW456L13_134at 150.419 kb on - strand, within PfGW456L13_134at 150.419 kb on - strand, within PfGW456L13_134

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.25 mg/ml
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148,415 - +0.2
148,449 + -1.6
148,449 + +1.6
148,450 - -0.1
148,450 - +1.7
148,504 + -0.1
148,504 + -0.6
148,504 + +0.8
148,505 - -0.8
148,505 - -0.8
148,505 - -0.1
148,534 + -0.3
148,534 + +0.0
148,535 - -0.6
148,535 - -0.1
148,635 + -1.6
148,635 + -2.0
148,636 - -0.4
148,636 - -0.0
148,636 - -1.0
148,660 - -0.4
148,688 + -0.3
148,744 + -0.1
148,744 + +0.6
148,745 - -0.8
148,839 + PfGW456L13_132 0.20 -0.2
148,839 + PfGW456L13_132 0.20 -0.7
148,839 + PfGW456L13_132 0.20 +2.2
148,839 + PfGW456L13_132 0.20 -0.3
148,839 + PfGW456L13_132 0.20 +1.0
148,840 - PfGW456L13_132 0.20 -0.0
148,840 - PfGW456L13_132 0.20 -0.9
148,840 - PfGW456L13_132 0.20 +0.0
148,840 - PfGW456L13_132 0.20 +1.6
149,142 + PfGW456L13_132 0.71 +0.6
149,143 - PfGW456L13_132 0.72 -1.8
149,276 - +0.5
149,336 + +0.1
149,336 + -0.8
149,336 + +1.2
149,337 - -1.5
149,389 + +0.0
149,389 + +0.4
149,390 - -0.9
149,390 - +1.3
149,390 - -0.3
149,390 - +2.7
149,390 - +0.4
149,390 - +0.3
149,393 + -0.5
149,393 + +1.0
149,393 + +0.7
149,394 - -0.5
149,394 - +1.2
149,394 - -1.2
149,394 - -0.7
149,467 + PfGW456L13_133 0.49 -0.8
149,467 + PfGW456L13_133 0.49 -0.8
149,467 + PfGW456L13_133 0.49 -0.6
149,468 - PfGW456L13_133 0.50 -1.0
149,468 - PfGW456L13_133 0.50 -1.2
149,734 + +0.3
149,734 + -2.1
150,047 + PfGW456L13_134 0.30 +0.7
150,047 + PfGW456L13_134 0.30 +0.5
150,048 - PfGW456L13_134 0.30 +1.4
150,048 - PfGW456L13_134 0.30 -0.7
150,073 + PfGW456L13_134 0.33 -0.6
150,074 - PfGW456L13_134 0.33 -0.8
150,074 - PfGW456L13_134 0.33 -0.0
150,074 - PfGW456L13_134 0.33 -0.1
150,136 + PfGW456L13_134 0.40 -1.2
150,136 + PfGW456L13_134 0.40 -1.6
150,136 + +2.2
150,137 - PfGW456L13_134 0.40 +0.3
150,177 + PfGW456L13_134 0.44 -0.7
150,178 - PfGW456L13_134 0.44 -0.3
150,178 - PfGW456L13_134 0.44 -1.3
150,277 + PfGW456L13_134 0.56 -0.7
150,277 + PfGW456L13_134 0.56 +0.2
150,278 - PfGW456L13_134 0.56 +0.2
150,278 - PfGW456L13_134 0.56 +0.5
150,278 - PfGW456L13_134 0.56 +2.2
150,278 - PfGW456L13_134 0.56 -0.1
150,278 - PfGW456L13_134 0.56 -0.5
150,278 - PfGW456L13_134 0.56 -0.2
150,278 - PfGW456L13_134 0.56 +1.0
150,287 + PfGW456L13_134 0.57 -1.1
150,287 + PfGW456L13_134 0.57 +0.8
150,287 + PfGW456L13_134 0.57 +0.5
150,287 + PfGW456L13_134 0.57 -0.5
150,287 + PfGW456L13_134 0.57 +0.9
150,287 + PfGW456L13_134 0.57 +0.2
150,287 + PfGW456L13_134 0.57 +1.3
150,287 + PfGW456L13_134 0.57 +1.4
150,287 + PfGW456L13_134 0.57 +0.5
150,287 + PfGW456L13_134 0.57 +0.4
150,288 - PfGW456L13_134 0.57 -0.1
150,288 - PfGW456L13_134 0.57 +0.6
150,288 - PfGW456L13_134 0.57 +0.6
150,288 - PfGW456L13_134 0.57 +0.1
150,288 - PfGW456L13_134 0.57 -0.3
150,288 - PfGW456L13_134 0.57 -0.4
150,288 - PfGW456L13_134 0.57 +0.8
150,288 - PfGW456L13_134 0.57 -1.7
150,288 - PfGW456L13_134 0.57 -0.3
150,288 - PfGW456L13_134 0.57 -0.6
150,350 + PfGW456L13_134 0.64 -0.7
150,350 + PfGW456L13_134 0.64 -1.2
150,350 + PfGW456L13_134 0.64 +0.9
150,350 + PfGW456L13_134 0.64 -0.1
150,350 + PfGW456L13_134 0.64 -0.2
150,350 + PfGW456L13_134 0.64 -0.4
150,351 - PfGW456L13_134 0.64 +0.6
150,351 - PfGW456L13_134 0.64 -0.4
150,351 - PfGW456L13_134 0.64 -0.2
150,351 - PfGW456L13_134 0.64 -0.2
150,351 - PfGW456L13_134 0.64 +0.6
150,351 - PfGW456L13_134 0.64 +1.9
150,351 - PfGW456L13_134 0.64 -0.2
150,418 + PfGW456L13_134 0.71 -0.0
150,419 - PfGW456L13_134 0.71 +0.3
150,419 - PfGW456L13_134 0.71 +0.7

Or see this region's nucleotide sequence