Experiment: LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF464 and GFF465 are separated by 517 nucleotides GFF465 and GFF466 are separated by 84 nucleotides GFF466 and GFF467 are separated by 22 nucleotides
GFF464 - FIG00543870: hypothetical protein, at 183,883 to 184,587
GFF464
GFF465 - Long polar fimbria protein A precursor, at 185,105 to 185,629
GFF465
GFF466 - Chaperone protein lpfB precursor, at 185,714 to 186,412
GFF466
GFF467 - type 1 fimbriae anchoring protein FimD, at 186,435 to 188,963
GFF467
Position (kb) 185
186 Strain fitness (log2 ratio) -1
0
1 at 184.114 kb on - strand, within GFF464 at 184.220 kb on - strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.243 kb on + strand, within GFF464 at 184.244 kb on - strand, within GFF464 at 184.252 kb on + strand, within GFF464 at 184.274 kb on + strand, within GFF464 at 184.372 kb on + strand, within GFF464 at 184.372 kb on + strand, within GFF464 at 184.372 kb on + strand, within GFF464 at 184.373 kb on - strand, within GFF464 at 184.375 kb on - strand, within GFF464 at 184.469 kb on + strand, within GFF464 at 184.484 kb on + strand, within GFF464 at 184.485 kb on - strand, within GFF464 at 184.485 kb on - strand, within GFF464 at 184.586 kb on - strand at 185.082 kb on + strand at 185.473 kb on + strand, within GFF465 at 185.500 kb on + strand, within GFF465 at 185.512 kb on + strand, within GFF465 at 185.543 kb on + strand, within GFF465 at 185.544 kb on - strand, within GFF465 at 185.555 kb on + strand, within GFF465 at 185.556 kb on - strand, within GFF465 at 185.572 kb on + strand, within GFF465 at 185.577 kb on + strand at 185.577 kb on + strand at 185.657 kb on + strand at 185.813 kb on - strand, within GFF466 at 185.846 kb on - strand, within GFF466 at 186.038 kb on - strand, within GFF466 at 186.361 kb on + strand at 186.598 kb on - strand at 186.598 kb on - strand at 186.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI remove 184,114 - GFF464 0.33 +0.1 184,220 - GFF464 0.48 -0.1 184,243 + GFF464 0.51 -0.0 184,243 + GFF464 0.51 -0.1 184,243 + GFF464 0.51 +0.5 184,243 + GFF464 0.51 +1.3 184,244 - GFF464 0.51 +0.3 184,252 + GFF464 0.52 -0.3 184,274 + GFF464 0.55 -0.0 184,372 + GFF464 0.69 -0.6 184,372 + GFF464 0.69 -0.6 184,372 + GFF464 0.69 -1.3 184,373 - GFF464 0.70 -0.5 184,375 - GFF464 0.70 -0.7 184,469 + GFF464 0.83 +0.4 184,484 + GFF464 0.85 +0.6 184,485 - GFF464 0.85 -0.4 184,485 - GFF464 0.85 +0.5 184,586 - -0.2 185,082 + -0.1 185,473 + GFF465 0.70 -0.6 185,500 + GFF465 0.75 -0.5 185,512 + GFF465 0.78 -0.3 185,543 + GFF465 0.83 -1.0 185,544 - GFF465 0.84 -1.0 185,555 + GFF465 0.86 -0.4 185,556 - GFF465 0.86 -0.3 185,572 + GFF465 0.89 +0.5 185,577 + -0.2 185,577 + -0.9 185,657 + -0.4 185,813 - GFF466 0.14 -0.5 185,846 - GFF466 0.19 -0.4 186,038 - GFF466 0.46 -0.5 186,361 + +0.2 186,598 - +0.9 186,598 - -1.1 186,629 + +0.2
Or see this region's nucleotide sequence