Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4623

Experiment: LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4622 and GFF4623 are separated by 285 nucleotidesGFF4623 and GFF4624 overlap by 1 nucleotidesGFF4624 and GFF4625 are separated by 12 nucleotides GFF4622 - FIG074102: hypothetical protein, at 413,577 to 414,275 GFF4622 GFF4623 - UDP-galactopyranose mutase (EC 5.4.99.9), at 414,561 to 415,712 GFF4623 GFF4624 - Putative glycosyl transferase, at 415,712 to 416,605 GFF4624 GFF4625 - Putative glycosyl transferase, at 416,618 to 417,751 GFF4625 Position (kb) 414 415 416Strain fitness (log2 ratio) -1 0 1at 413.711 kb on - strand, within GFF4622at 413.795 kb on + strand, within GFF4622at 413.932 kb on - strand, within GFF4622at 414.007 kb on + strand, within GFF4622at 414.007 kb on + strand, within GFF4622at 414.173 kb on - strand, within GFF4622at 414.286 kb on - strandat 414.643 kb on + strandat 415.003 kb on - strand, within GFF4623at 415.003 kb on - strand, within GFF4623at 415.025 kb on + strand, within GFF4623at 416.072 kb on + strand, within GFF4624

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
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413,711 - GFF4622 0.19 +0.2
413,795 + GFF4622 0.31 -0.1
413,932 - GFF4622 0.51 -0.3
414,007 + GFF4622 0.62 -0.8
414,007 + GFF4622 0.62 +0.3
414,173 - GFF4622 0.85 -0.5
414,286 - -0.0
414,643 + -0.3
415,003 - GFF4623 0.38 +0.2
415,003 - GFF4623 0.38 +1.0
415,025 + GFF4623 0.40 +1.2
416,072 + GFF4624 0.40 +0.0

Or see this region's nucleotide sequence