Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2551

Experiment: LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2550 and GFF2551 are separated by 128 nucleotidesGFF2551 and GFF2552 are separated by 142 nucleotidesGFF2552 and GFF2553 are separated by 349 nucleotides GFF2550 - Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141), at 66,334 to 68,118 GFF2550 GFF2551 - Putative outer membrane or secreted lipoprotein, at 68,247 to 69,032 GFF2551 GFF2552 - Putative secreted protein, at 69,175 to 69,504 GFF2552 GFF2553 - Osmotically inducible protein C, at 69,854 to 70,285 GFF2553 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 67.276 kb on - strand, within GFF2550at 67.311 kb on + strand, within GFF2550at 67.361 kb on + strand, within GFF2550at 67.422 kb on - strand, within GFF2550at 67.827 kb on - strand, within GFF2550at 67.847 kb on + strand, within GFF2550at 67.928 kb on + strand, within GFF2550at 68.079 kb on - strandat 68.182 kb on - strandat 68.248 kb on + strandat 68.645 kb on - strand, within GFF2551at 68.708 kb on + strand, within GFF2551at 68.713 kb on + strand, within GFF2551at 68.713 kb on + strand, within GFF2551at 68.756 kb on - strand, within GFF2551at 68.797 kb on + strand, within GFF2551at 68.798 kb on - strand, within GFF2551at 68.862 kb on - strand, within GFF2551at 68.862 kb on - strand, within GFF2551at 68.923 kb on - strand, within GFF2551at 68.951 kb on + strand, within GFF2551at 69.420 kb on + strand, within GFF2552at 69.421 kb on - strand, within GFF2552at 69.423 kb on + strand, within GFF2552at 69.423 kb on + strand, within GFF2552at 69.693 kb on - strandat 69.753 kb on + strandat 69.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
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67,276 - GFF2550 0.53 -0.4
67,311 + GFF2550 0.55 +0.6
67,361 + GFF2550 0.58 +0.1
67,422 - GFF2550 0.61 -0.0
67,827 - GFF2550 0.84 -0.6
67,847 + GFF2550 0.85 -1.5
67,928 + GFF2550 0.89 +0.9
68,079 - +0.1
68,182 - +0.8
68,248 + -0.6
68,645 - GFF2551 0.51 -0.6
68,708 + GFF2551 0.59 -0.7
68,713 + GFF2551 0.59 -0.5
68,713 + GFF2551 0.59 -0.2
68,756 - GFF2551 0.65 -0.5
68,797 + GFF2551 0.70 -1.5
68,798 - GFF2551 0.70 -2.2
68,862 - GFF2551 0.78 -0.1
68,862 - GFF2551 0.78 -0.3
68,923 - GFF2551 0.86 -0.8
68,951 + GFF2551 0.90 -0.8
69,420 + GFF2552 0.74 -0.0
69,421 - GFF2552 0.75 +0.3
69,423 + GFF2552 0.75 +0.1
69,423 + GFF2552 0.75 +0.2
69,693 - +0.1
69,753 + -0.5
69,809 - -0.3

Or see this region's nucleotide sequence