Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4637

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4636 and Echvi_4637 are separated by 73 nucleotidesEchvi_4637 and Echvi_4638 are separated by 128 nucleotides Echvi_4636: Echvi_4636 - lipid-A-disaccharide synthase, at 5,546,775 to 5,547,890 _4636 Echvi_4637: Echvi_4637 - 6-pyruvoyl-tetrahydropterin synthase, at 5,547,964 to 5,548,383 _4637 Echvi_4638: Echvi_4638 - SusD family., at 5,548,512 to 5,549,981 _4638 Position (kb) 5547 5548 5549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5547.907 kb on - strandat 5547.936 kb on - strandat 5547.975 kb on - strandat 5548.117 kb on - strand, within Echvi_4637at 5548.130 kb on - strand, within Echvi_4637at 5548.130 kb on - strand, within Echvi_4637at 5548.130 kb on - strand, within Echvi_4637at 5548.156 kb on - strand, within Echvi_4637at 5548.196 kb on - strand, within Echvi_4637at 5548.261 kb on - strand, within Echvi_4637at 5548.327 kb on - strand, within Echvi_4637at 5548.327 kb on - strand, within Echvi_4637at 5548.379 kb on - strandat 5548.433 kb on + strandat 5548.433 kb on + strandat 5548.480 kb on + strandat 5548.497 kb on - strandat 5548.501 kb on - strandat 5548.557 kb on + strandat 5548.558 kb on - strandat 5548.559 kb on + strandat 5548.559 kb on + strandat 5548.574 kb on + strandat 5548.574 kb on + strandat 5548.574 kb on + strandat 5548.574 kb on + strandat 5548.574 kb on + strandat 5548.575 kb on - strandat 5548.610 kb on + strandat 5548.611 kb on - strandat 5548.611 kb on - strandat 5548.658 kb on + strandat 5548.658 kb on + strandat 5548.659 kb on - strand, within Echvi_4638at 5548.659 kb on - strand, within Echvi_4638at 5548.663 kb on + strand, within Echvi_4638at 5548.663 kb on + strand, within Echvi_4638at 5548.670 kb on + strand, within Echvi_4638at 5548.695 kb on - strand, within Echvi_4638at 5548.747 kb on + strand, within Echvi_4638at 5548.747 kb on + strand, within Echvi_4638at 5548.775 kb on + strand, within Echvi_4638at 5548.775 kb on + strand, within Echvi_4638at 5548.797 kb on - strand, within Echvi_4638at 5548.843 kb on - strand, within Echvi_4638at 5548.843 kb on - strand, within Echvi_4638at 5548.847 kb on - strand, within Echvi_4638at 5548.867 kb on + strand, within Echvi_4638at 5548.867 kb on + strand, within Echvi_4638at 5548.873 kb on + strand, within Echvi_4638at 5548.957 kb on + strand, within Echvi_4638at 5549.007 kb on - strand, within Echvi_4638at 5549.008 kb on + strand, within Echvi_4638at 5549.008 kb on + strand, within Echvi_4638at 5549.008 kb on + strand, within Echvi_4638at 5549.021 kb on + strand, within Echvi_4638at 5549.050 kb on + strand, within Echvi_4638at 5549.050 kb on + strand, within Echvi_4638at 5549.050 kb on + strand, within Echvi_4638at 5549.054 kb on + strand, within Echvi_4638at 5549.054 kb on + strand, within Echvi_4638at 5549.054 kb on + strand, within Echvi_4638at 5549.054 kb on + strand, within Echvi_4638at 5549.054 kb on + strand, within Echvi_4638at 5549.054 kb on + strand, within Echvi_4638at 5549.055 kb on - strand, within Echvi_4638at 5549.055 kb on - strand, within Echvi_4638at 5549.056 kb on + strand, within Echvi_4638at 5549.056 kb on + strand, within Echvi_4638at 5549.057 kb on - strand, within Echvi_4638at 5549.060 kb on + strand, within Echvi_4638at 5549.060 kb on + strand, within Echvi_4638at 5549.061 kb on - strand, within Echvi_4638at 5549.061 kb on - strand, within Echvi_4638at 5549.064 kb on + strand, within Echvi_4638at 5549.064 kb on + strand, within Echvi_4638at 5549.064 kb on + strand, within Echvi_4638at 5549.064 kb on + strand, within Echvi_4638at 5549.064 kb on + strand, within Echvi_4638at 5549.148 kb on + strand, within Echvi_4638at 5549.149 kb on - strand, within Echvi_4638at 5549.149 kb on - strand, within Echvi_4638at 5549.168 kb on + strand, within Echvi_4638at 5549.169 kb on - strand, within Echvi_4638at 5549.186 kb on + strand, within Echvi_4638at 5549.207 kb on + strand, within Echvi_4638at 5549.207 kb on + strand, within Echvi_4638at 5549.208 kb on - strand, within Echvi_4638at 5549.218 kb on + strand, within Echvi_4638at 5549.219 kb on - strand, within Echvi_4638at 5549.219 kb on - strand, within Echvi_4638at 5549.228 kb on + strand, within Echvi_4638at 5549.255 kb on + strand, within Echvi_4638at 5549.263 kb on + strand, within Echvi_4638at 5549.263 kb on + strand, within Echvi_4638at 5549.264 kb on - strand, within Echvi_4638at 5549.269 kb on + strand, within Echvi_4638at 5549.270 kb on - strand, within Echvi_4638at 5549.270 kb on - strand, within Echvi_4638at 5549.270 kb on - strand, within Echvi_4638at 5549.343 kb on + strand, within Echvi_4638at 5549.344 kb on - strand, within Echvi_4638

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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5,547,907 - -0.4
5,547,936 - +0.3
5,547,975 - +0.3
5,548,117 - Echvi_4637 0.36 -0.9
5,548,130 - Echvi_4637 0.40 -2.7
5,548,130 - Echvi_4637 0.40 -1.5
5,548,130 - Echvi_4637 0.40 -1.6
5,548,156 - Echvi_4637 0.46 -1.4
5,548,196 - Echvi_4637 0.55 -2.0
5,548,261 - Echvi_4637 0.71 -1.0
5,548,327 - Echvi_4637 0.86 -3.0
5,548,327 - Echvi_4637 0.86 -1.4
5,548,379 - -0.4
5,548,433 + -0.0
5,548,433 + +0.6
5,548,480 + -0.5
5,548,497 - +0.0
5,548,501 - +1.5
5,548,557 + -1.0
5,548,558 - +1.0
5,548,559 + -0.6
5,548,559 + +0.8
5,548,574 + -1.7
5,548,574 + +1.1
5,548,574 + +1.1
5,548,574 + -0.8
5,548,574 + -0.6
5,548,575 - +1.6
5,548,610 + +0.6
5,548,611 - -1.5
5,548,611 - +1.5
5,548,658 + +0.6
5,548,658 + +0.8
5,548,659 - Echvi_4638 0.10 -0.9
5,548,659 - Echvi_4638 0.10 -0.8
5,548,663 + Echvi_4638 0.10 +0.5
5,548,663 + Echvi_4638 0.10 +0.1
5,548,670 + Echvi_4638 0.11 +1.1
5,548,695 - Echvi_4638 0.12 -0.0
5,548,747 + Echvi_4638 0.16 -1.1
5,548,747 + Echvi_4638 0.16 +0.9
5,548,775 + Echvi_4638 0.18 +1.4
5,548,775 + Echvi_4638 0.18 -0.7
5,548,797 - Echvi_4638 0.19 +0.8
5,548,843 - Echvi_4638 0.23 +0.3
5,548,843 - Echvi_4638 0.23 -0.7
5,548,847 - Echvi_4638 0.23 -0.2
5,548,867 + Echvi_4638 0.24 -0.5
5,548,867 + Echvi_4638 0.24 +1.3
5,548,873 + Echvi_4638 0.25 +0.3
5,548,957 + Echvi_4638 0.30 +1.1
5,549,007 - Echvi_4638 0.34 +0.8
5,549,008 + Echvi_4638 0.34 -0.1
5,549,008 + Echvi_4638 0.34 +0.1
5,549,008 + Echvi_4638 0.34 +1.5
5,549,021 + Echvi_4638 0.35 +0.0
5,549,050 + Echvi_4638 0.37 -1.2
5,549,050 + Echvi_4638 0.37 +0.9
5,549,050 + Echvi_4638 0.37 -1.5
5,549,054 + Echvi_4638 0.37 -1.0
5,549,054 + Echvi_4638 0.37 -0.5
5,549,054 + Echvi_4638 0.37 +0.7
5,549,054 + Echvi_4638 0.37 -1.2
5,549,054 + Echvi_4638 0.37 -0.9
5,549,054 + Echvi_4638 0.37 +1.8
5,549,055 - Echvi_4638 0.37 -1.7
5,549,055 - Echvi_4638 0.37 +0.9
5,549,056 + Echvi_4638 0.37 +0.7
5,549,056 + Echvi_4638 0.37 -0.2
5,549,057 - Echvi_4638 0.37 +0.8
5,549,060 + Echvi_4638 0.37 -0.8
5,549,060 + Echvi_4638 0.37 +0.5
5,549,061 - Echvi_4638 0.37 +0.5
5,549,061 - Echvi_4638 0.37 +0.1
5,549,064 + Echvi_4638 0.38 -0.2
5,549,064 + Echvi_4638 0.38 +1.4
5,549,064 + Echvi_4638 0.38 +0.7
5,549,064 + Echvi_4638 0.38 +0.2
5,549,064 + Echvi_4638 0.38 +1.6
5,549,148 + Echvi_4638 0.43 +0.0
5,549,149 - Echvi_4638 0.43 -1.2
5,549,149 - Echvi_4638 0.43 +0.5
5,549,168 + Echvi_4638 0.45 -0.3
5,549,169 - Echvi_4638 0.45 -0.5
5,549,186 + Echvi_4638 0.46 +0.0
5,549,207 + Echvi_4638 0.47 -0.0
5,549,207 + Echvi_4638 0.47 +0.3
5,549,208 - Echvi_4638 0.47 -0.9
5,549,218 + Echvi_4638 0.48 +0.5
5,549,219 - Echvi_4638 0.48 +0.5
5,549,219 - Echvi_4638 0.48 +0.7
5,549,228 + Echvi_4638 0.49 +0.1
5,549,255 + Echvi_4638 0.51 +1.1
5,549,263 + Echvi_4638 0.51 +1.1
5,549,263 + Echvi_4638 0.51 +1.5
5,549,264 - Echvi_4638 0.51 +0.3
5,549,269 + Echvi_4638 0.51 +1.0
5,549,270 - Echvi_4638 0.52 +1.1
5,549,270 - Echvi_4638 0.52 -0.4
5,549,270 - Echvi_4638 0.52 -2.5
5,549,343 + Echvi_4638 0.57 +1.1
5,549,344 - Echvi_4638 0.57 +0.9

Or see this region's nucleotide sequence