Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2684

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2682 and Echvi_2683 are separated by 15 nucleotidesEchvi_2683 and Echvi_2684 are separated by 54 nucleotidesEchvi_2684 and Echvi_2685 overlap by 20 nucleotidesEchvi_2685 and Echvi_2686 overlap by 1 nucleotides Echvi_2682: Echvi_2682 - Domain of unknown function (DUF303)., at 3,189,329 to 3,191,299 _2682 Echvi_2683: Echvi_2683 - hypothetical protein, at 3,191,315 to 3,191,509 _2683 Echvi_2684: Echvi_2684 - Dihydrofolate reductase, at 3,191,564 to 3,192,100 _2684 Echvi_2685: Echvi_2685 - hypothetical protein, at 3,192,081 to 3,192,305 _2685 Echvi_2686: Echvi_2686 - Protocatechuate 3,4-dioxygenase beta subunit, at 3,192,305 to 3,193,027 _2686 Position (kb) 3191 3192 3193Strain fitness (log2 ratio) -2 -1 0 1at 3190.570 kb on + strand, within Echvi_2682at 3190.595 kb on + strand, within Echvi_2682at 3190.596 kb on - strand, within Echvi_2682at 3190.596 kb on - strand, within Echvi_2682at 3190.596 kb on - strand, within Echvi_2682at 3190.596 kb on - strand, within Echvi_2682at 3190.603 kb on + strand, within Echvi_2682at 3190.604 kb on - strand, within Echvi_2682at 3190.632 kb on + strand, within Echvi_2682at 3190.681 kb on + strand, within Echvi_2682at 3190.681 kb on + strand, within Echvi_2682at 3190.681 kb on + strand, within Echvi_2682at 3190.682 kb on - strand, within Echvi_2682at 3190.682 kb on - strand, within Echvi_2682at 3190.685 kb on + strand, within Echvi_2682at 3190.685 kb on + strand, within Echvi_2682at 3190.685 kb on + strand, within Echvi_2682at 3190.685 kb on + strand, within Echvi_2682at 3190.686 kb on - strand, within Echvi_2682at 3190.686 kb on - strand, within Echvi_2682at 3190.686 kb on - strand, within Echvi_2682at 3190.878 kb on + strand, within Echvi_2682at 3190.879 kb on - strand, within Echvi_2682at 3190.879 kb on - strand, within Echvi_2682at 3190.879 kb on - strand, within Echvi_2682at 3190.959 kb on + strand, within Echvi_2682at 3190.964 kb on + strand, within Echvi_2682at 3190.965 kb on - strand, within Echvi_2682at 3190.965 kb on - strand, within Echvi_2682at 3190.965 kb on - strand, within Echvi_2682at 3190.965 kb on - strand, within Echvi_2682at 3191.026 kb on + strand, within Echvi_2682at 3191.032 kb on - strand, within Echvi_2682at 3191.052 kb on + strand, within Echvi_2682at 3191.065 kb on - strand, within Echvi_2682at 3191.090 kb on - strand, within Echvi_2682at 3191.153 kb on - strandat 3191.204 kb on + strandat 3191.218 kb on + strandat 3191.336 kb on + strand, within Echvi_2683at 3191.341 kb on - strand, within Echvi_2683at 3191.451 kb on + strand, within Echvi_2683at 3191.476 kb on + strand, within Echvi_2683at 3191.476 kb on + strand, within Echvi_2683at 3191.477 kb on - strand, within Echvi_2683at 3191.516 kb on + strandat 3191.575 kb on - strandat 3191.585 kb on - strandat 3191.608 kb on + strandat 3191.621 kb on - strand, within Echvi_2684at 3191.621 kb on - strand, within Echvi_2684at 3191.631 kb on + strand, within Echvi_2684at 3191.631 kb on + strand, within Echvi_2684at 3191.631 kb on + strand, within Echvi_2684at 3191.669 kb on + strand, within Echvi_2684at 3191.670 kb on - strand, within Echvi_2684at 3191.727 kb on - strand, within Echvi_2684at 3191.732 kb on + strand, within Echvi_2684at 3191.732 kb on + strand, within Echvi_2684at 3191.733 kb on - strand, within Echvi_2684at 3191.733 kb on - strand, within Echvi_2684at 3191.733 kb on - strand, within Echvi_2684at 3191.733 kb on - strand, within Echvi_2684at 3191.739 kb on + strand, within Echvi_2684at 3191.748 kb on + strand, within Echvi_2684at 3191.748 kb on + strand, within Echvi_2684at 3191.749 kb on - strand, within Echvi_2684at 3191.763 kb on - strand, within Echvi_2684at 3191.786 kb on + strand, within Echvi_2684at 3191.787 kb on - strand, within Echvi_2684at 3191.787 kb on - strand, within Echvi_2684at 3191.787 kb on - strand, within Echvi_2684at 3191.887 kb on + strand, within Echvi_2684at 3191.895 kb on - strand, within Echvi_2684at 3191.961 kb on + strand, within Echvi_2684at 3191.961 kb on + strand, within Echvi_2684at 3191.967 kb on + strand, within Echvi_2684at 3191.968 kb on - strand, within Echvi_2684at 3191.977 kb on - strand, within Echvi_2684at 3192.069 kb on + strandat 3192.069 kb on + strandat 3192.189 kb on - strand, within Echvi_2685at 3192.189 kb on - strand, within Echvi_2685at 3192.189 kb on - strand, within Echvi_2685at 3192.190 kb on + strand, within Echvi_2685at 3192.191 kb on - strand, within Echvi_2685at 3192.239 kb on + strand, within Echvi_2685at 3192.239 kb on + strand, within Echvi_2685at 3192.315 kb on - strandat 3192.318 kb on - strandat 3192.322 kb on + strandat 3192.323 kb on - strandat 3192.398 kb on + strand, within Echvi_2686at 3192.399 kb on - strand, within Echvi_2686at 3192.445 kb on - strand, within Echvi_2686at 3192.445 kb on - strand, within Echvi_2686at 3192.467 kb on + strand, within Echvi_2686at 3192.476 kb on + strand, within Echvi_2686at 3192.484 kb on + strand, within Echvi_2686at 3192.559 kb on + strand, within Echvi_2686at 3192.560 kb on - strand, within Echvi_2686at 3192.560 kb on - strand, within Echvi_2686at 3192.596 kb on - strand, within Echvi_2686at 3192.603 kb on + strand, within Echvi_2686at 3192.603 kb on + strand, within Echvi_2686at 3192.603 kb on + strand, within Echvi_2686at 3192.603 kb on + strand, within Echvi_2686at 3192.603 kb on + strand, within Echvi_2686at 3192.603 kb on + strand, within Echvi_2686at 3192.604 kb on - strand, within Echvi_2686at 3192.702 kb on + strand, within Echvi_2686at 3192.702 kb on + strand, within Echvi_2686at 3192.776 kb on - strand, within Echvi_2686at 3192.833 kb on - strand, within Echvi_2686at 3192.895 kb on + strand, within Echvi_2686at 3192.895 kb on + strand, within Echvi_2686at 3192.896 kb on - strand, within Echvi_2686at 3192.896 kb on - strand, within Echvi_2686at 3192.896 kb on - strand, within Echvi_2686at 3192.896 kb on - strand, within Echvi_2686at 3192.896 kb on - strand, within Echvi_2686at 3192.896 kb on - strand, within Echvi_2686at 3192.998 kb on + strandat 3192.998 kb on + strandat 3193.007 kb on + strandat 3193.008 kb on - strandat 3193.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,190,570 + Echvi_2682 0.63 +0.8
3,190,595 + Echvi_2682 0.64 +1.3
3,190,596 - Echvi_2682 0.64 -0.3
3,190,596 - Echvi_2682 0.64 +0.2
3,190,596 - Echvi_2682 0.64 +0.0
3,190,596 - Echvi_2682 0.64 +0.5
3,190,603 + Echvi_2682 0.65 -0.4
3,190,604 - Echvi_2682 0.65 +0.4
3,190,632 + Echvi_2682 0.66 -2.4
3,190,681 + Echvi_2682 0.69 +0.1
3,190,681 + Echvi_2682 0.69 +0.1
3,190,681 + Echvi_2682 0.69 +0.6
3,190,682 - Echvi_2682 0.69 +0.5
3,190,682 - Echvi_2682 0.69 +0.1
3,190,685 + Echvi_2682 0.69 -0.3
3,190,685 + Echvi_2682 0.69 +1.7
3,190,685 + Echvi_2682 0.69 +0.1
3,190,685 + Echvi_2682 0.69 -0.5
3,190,686 - Echvi_2682 0.69 -0.5
3,190,686 - Echvi_2682 0.69 +0.8
3,190,686 - Echvi_2682 0.69 -0.1
3,190,878 + Echvi_2682 0.79 -0.5
3,190,879 - Echvi_2682 0.79 +1.7
3,190,879 - Echvi_2682 0.79 -2.4
3,190,879 - Echvi_2682 0.79 +0.9
3,190,959 + Echvi_2682 0.83 +1.3
3,190,964 + Echvi_2682 0.83 +0.5
3,190,965 - Echvi_2682 0.83 +1.3
3,190,965 - Echvi_2682 0.83 -0.5
3,190,965 - Echvi_2682 0.83 -0.5
3,190,965 - Echvi_2682 0.83 +0.5
3,191,026 + Echvi_2682 0.86 -0.0
3,191,032 - Echvi_2682 0.86 -0.6
3,191,052 + Echvi_2682 0.87 +0.9
3,191,065 - Echvi_2682 0.88 -0.7
3,191,090 - Echvi_2682 0.89 -0.7
3,191,153 - +1.1
3,191,204 + -1.2
3,191,218 + -0.6
3,191,336 + Echvi_2683 0.11 +1.5
3,191,341 - Echvi_2683 0.13 +0.7
3,191,451 + Echvi_2683 0.70 -2.2
3,191,476 + Echvi_2683 0.83 +1.1
3,191,476 + Echvi_2683 0.83 -0.5
3,191,477 - Echvi_2683 0.83 -0.3
3,191,516 + -1.0
3,191,575 - -1.1
3,191,585 - -2.2
3,191,608 + +1.1
3,191,621 - Echvi_2684 0.11 -1.9
3,191,621 - Echvi_2684 0.11 +1.4
3,191,631 + Echvi_2684 0.12 +0.6
3,191,631 + Echvi_2684 0.12 -1.2
3,191,631 + Echvi_2684 0.12 -0.1
3,191,669 + Echvi_2684 0.20 -0.0
3,191,670 - Echvi_2684 0.20 +1.6
3,191,727 - Echvi_2684 0.30 -0.2
3,191,732 + Echvi_2684 0.31 -0.9
3,191,732 + Echvi_2684 0.31 +0.4
3,191,733 - Echvi_2684 0.31 -0.9
3,191,733 - Echvi_2684 0.31 +1.0
3,191,733 - Echvi_2684 0.31 -0.8
3,191,733 - Echvi_2684 0.31 -0.5
3,191,739 + Echvi_2684 0.33 -0.3
3,191,748 + Echvi_2684 0.34 -0.2
3,191,748 + Echvi_2684 0.34 -0.2
3,191,749 - Echvi_2684 0.34 -2.0
3,191,763 - Echvi_2684 0.37 -1.1
3,191,786 + Echvi_2684 0.41 -0.5
3,191,787 - Echvi_2684 0.42 +1.5
3,191,787 - Echvi_2684 0.42 -1.9
3,191,787 - Echvi_2684 0.42 -0.9
3,191,887 + Echvi_2684 0.60 +0.1
3,191,895 - Echvi_2684 0.62 +0.1
3,191,961 + Echvi_2684 0.74 -0.5
3,191,961 + Echvi_2684 0.74 +0.3
3,191,967 + Echvi_2684 0.75 -1.5
3,191,968 - Echvi_2684 0.75 +1.7
3,191,977 - Echvi_2684 0.77 -2.2
3,192,069 + -0.9
3,192,069 + -0.6
3,192,189 - Echvi_2685 0.48 +0.9
3,192,189 - Echvi_2685 0.48 -0.8
3,192,189 - Echvi_2685 0.48 +0.7
3,192,190 + Echvi_2685 0.48 +0.4
3,192,191 - Echvi_2685 0.49 +0.6
3,192,239 + Echvi_2685 0.70 +1.3
3,192,239 + Echvi_2685 0.70 +0.2
3,192,315 - +0.5
3,192,318 - -0.7
3,192,322 + +0.3
3,192,323 - -1.0
3,192,398 + Echvi_2686 0.13 +0.0
3,192,399 - Echvi_2686 0.13 -0.0
3,192,445 - Echvi_2686 0.19 -1.6
3,192,445 - Echvi_2686 0.19 +0.7
3,192,467 + Echvi_2686 0.22 -1.2
3,192,476 + Echvi_2686 0.24 +0.1
3,192,484 + Echvi_2686 0.25 +1.6
3,192,559 + Echvi_2686 0.35 +0.0
3,192,560 - Echvi_2686 0.35 -0.9
3,192,560 - Echvi_2686 0.35 -0.1
3,192,596 - Echvi_2686 0.40 -0.6
3,192,603 + Echvi_2686 0.41 -0.1
3,192,603 + Echvi_2686 0.41 +1.0
3,192,603 + Echvi_2686 0.41 -0.5
3,192,603 + Echvi_2686 0.41 +0.3
3,192,603 + Echvi_2686 0.41 +0.8
3,192,603 + Echvi_2686 0.41 +1.3
3,192,604 - Echvi_2686 0.41 +0.5
3,192,702 + Echvi_2686 0.55 -1.8
3,192,702 + Echvi_2686 0.55 +0.7
3,192,776 - Echvi_2686 0.65 -0.6
3,192,833 - Echvi_2686 0.73 +0.4
3,192,895 + Echvi_2686 0.82 -0.0
3,192,895 + Echvi_2686 0.82 +0.0
3,192,896 - Echvi_2686 0.82 -1.6
3,192,896 - Echvi_2686 0.82 +0.1
3,192,896 - Echvi_2686 0.82 -0.1
3,192,896 - Echvi_2686 0.82 -0.3
3,192,896 - Echvi_2686 0.82 -0.1
3,192,896 - Echvi_2686 0.82 -0.1
3,192,998 + -0.4
3,192,998 + -0.5
3,193,007 + +0.3
3,193,008 - +1.0
3,193,081 - +0.5

Or see this region's nucleotide sequence