Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2194

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2192 and Echvi_2193 are separated by 211 nucleotidesEchvi_2193 and Echvi_2194 are separated by 68 nucleotidesEchvi_2194 and Echvi_2195 are separated by 61 nucleotides Echvi_2192: Echvi_2192 - hypothetical protein, at 2,620,299 to 2,621,495 _2192 Echvi_2193: Echvi_2193 - Transcriptional regulators, at 2,621,707 to 2,622,189 _2193 Echvi_2194: Echvi_2194 - ADP-ribose pyrophosphatase, at 2,622,258 to 2,622,800 _2194 Echvi_2195: Echvi_2195 - putative efflux protein, MATE family, at 2,622,862 to 2,624,235 _2195 Position (kb) 2622 2623Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2621.270 kb on - strand, within Echvi_2192at 2621.341 kb on - strand, within Echvi_2192at 2621.341 kb on - strand, within Echvi_2192at 2621.341 kb on - strand, within Echvi_2192at 2621.341 kb on - strand, within Echvi_2192at 2621.410 kb on - strandat 2621.442 kb on - strandat 2621.586 kb on - strandat 2621.641 kb on - strandat 2621.652 kb on - strandat 2621.720 kb on + strandat 2621.721 kb on - strandat 2621.809 kb on - strand, within Echvi_2193at 2621.809 kb on - strand, within Echvi_2193at 2621.830 kb on - strand, within Echvi_2193at 2621.865 kb on + strand, within Echvi_2193at 2621.866 kb on - strand, within Echvi_2193at 2621.866 kb on - strand, within Echvi_2193at 2621.869 kb on - strand, within Echvi_2193at 2621.878 kb on + strand, within Echvi_2193at 2621.878 kb on + strand, within Echvi_2193at 2621.923 kb on - strand, within Echvi_2193at 2621.923 kb on - strand, within Echvi_2193at 2621.923 kb on - strand, within Echvi_2193at 2621.931 kb on - strand, within Echvi_2193at 2621.931 kb on - strand, within Echvi_2193at 2621.952 kb on + strand, within Echvi_2193at 2621.965 kb on - strand, within Echvi_2193at 2621.965 kb on - strand, within Echvi_2193at 2622.069 kb on + strand, within Echvi_2193at 2622.069 kb on + strand, within Echvi_2193at 2622.070 kb on - strand, within Echvi_2193at 2622.070 kb on - strand, within Echvi_2193at 2622.070 kb on - strand, within Echvi_2193at 2622.101 kb on + strand, within Echvi_2193at 2622.101 kb on + strand, within Echvi_2193at 2622.102 kb on - strand, within Echvi_2193at 2622.102 kb on - strand, within Echvi_2193at 2622.102 kb on - strand, within Echvi_2193at 2622.111 kb on + strand, within Echvi_2193at 2622.211 kb on + strandat 2622.212 kb on - strandat 2622.212 kb on - strandat 2622.212 kb on - strandat 2622.212 kb on - strandat 2622.257 kb on + strandat 2622.300 kb on + strandat 2622.301 kb on - strandat 2622.306 kb on - strandat 2622.323 kb on - strand, within Echvi_2194at 2622.428 kb on + strand, within Echvi_2194at 2622.429 kb on - strand, within Echvi_2194at 2622.429 kb on - strand, within Echvi_2194at 2622.469 kb on - strand, within Echvi_2194at 2622.567 kb on - strand, within Echvi_2194at 2622.567 kb on - strand, within Echvi_2194at 2622.593 kb on + strand, within Echvi_2194at 2622.631 kb on - strand, within Echvi_2194at 2622.675 kb on - strand, within Echvi_2194at 2622.797 kb on - strandat 2622.806 kb on + strandat 2622.870 kb on - strandat 2622.970 kb on - strandat 2622.972 kb on + strandat 2622.972 kb on + strandat 2622.972 kb on + strandat 2622.973 kb on - strandat 2622.973 kb on - strandat 2622.973 kb on - strandat 2622.973 kb on - strandat 2622.973 kb on - strandat 2623.026 kb on + strand, within Echvi_2195at 2623.029 kb on + strand, within Echvi_2195at 2623.030 kb on - strand, within Echvi_2195at 2623.041 kb on - strand, within Echvi_2195at 2623.086 kb on - strand, within Echvi_2195at 2623.089 kb on - strandat 2623.138 kb on - strand, within Echvi_2195at 2623.154 kb on + strand, within Echvi_2195at 2623.218 kb on + strand, within Echvi_2195at 2623.218 kb on + strand, within Echvi_2195at 2623.238 kb on + strand, within Echvi_2195at 2623.386 kb on - strand, within Echvi_2195at 2623.386 kb on - strand, within Echvi_2195at 2623.408 kb on + strand, within Echvi_2195at 2623.409 kb on - strand, within Echvi_2195at 2623.498 kb on + strand, within Echvi_2195at 2623.503 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.719 kb on + strand, within Echvi_2195at 2623.720 kb on - strand, within Echvi_2195at 2623.723 kb on + strand, within Echvi_2195at 2623.723 kb on + strand, within Echvi_2195at 2623.725 kb on + strand, within Echvi_2195at 2623.726 kb on - strand, within Echvi_2195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
2,621,270 - Echvi_2192 0.81 +0.9
2,621,341 - Echvi_2192 0.87 -0.3
2,621,341 - Echvi_2192 0.87 +1.5
2,621,341 - Echvi_2192 0.87 +0.3
2,621,341 - Echvi_2192 0.87 +0.1
2,621,410 - -0.4
2,621,442 - +0.3
2,621,586 - -3.2
2,621,641 - +1.4
2,621,652 - +1.3
2,621,720 + +2.1
2,621,721 - +1.5
2,621,809 - Echvi_2193 0.21 +1.9
2,621,809 - Echvi_2193 0.21 +1.4
2,621,830 - Echvi_2193 0.25 +1.3
2,621,865 + Echvi_2193 0.33 +1.4
2,621,866 - Echvi_2193 0.33 +2.2
2,621,866 - Echvi_2193 0.33 +1.7
2,621,869 - Echvi_2193 0.34 +2.3
2,621,878 + Echvi_2193 0.35 +2.1
2,621,878 + Echvi_2193 0.35 +2.3
2,621,923 - Echvi_2193 0.45 +1.7
2,621,923 - Echvi_2193 0.45 +1.7
2,621,923 - Echvi_2193 0.45 +1.8
2,621,931 - Echvi_2193 0.46 +1.5
2,621,931 - Echvi_2193 0.46 +1.4
2,621,952 + Echvi_2193 0.51 +1.3
2,621,965 - Echvi_2193 0.53 +1.9
2,621,965 - Echvi_2193 0.53 +1.6
2,622,069 + Echvi_2193 0.75 +1.7
2,622,069 + Echvi_2193 0.75 +1.9
2,622,070 - Echvi_2193 0.75 +1.7
2,622,070 - Echvi_2193 0.75 +1.7
2,622,070 - Echvi_2193 0.75 +1.6
2,622,101 + Echvi_2193 0.82 +2.3
2,622,101 + Echvi_2193 0.82 +1.8
2,622,102 - Echvi_2193 0.82 +1.9
2,622,102 - Echvi_2193 0.82 +2.0
2,622,102 - Echvi_2193 0.82 +1.9
2,622,111 + Echvi_2193 0.84 +1.5
2,622,211 + +0.2
2,622,212 - +1.7
2,622,212 - +1.5
2,622,212 - +1.1
2,622,212 - -0.8
2,622,257 + +1.2
2,622,300 + -1.6
2,622,301 - -0.6
2,622,306 - +0.4
2,622,323 - Echvi_2194 0.12 +0.5
2,622,428 + Echvi_2194 0.31 +2.2
2,622,429 - Echvi_2194 0.31 +1.1
2,622,429 - Echvi_2194 0.31 +0.9
2,622,469 - Echvi_2194 0.39 +1.2
2,622,567 - Echvi_2194 0.57 -0.6
2,622,567 - Echvi_2194 0.57 -1.1
2,622,593 + Echvi_2194 0.62 -0.4
2,622,631 - Echvi_2194 0.69 -0.2
2,622,675 - Echvi_2194 0.77 +0.8
2,622,797 - +1.5
2,622,806 + -0.8
2,622,870 - +0.3
2,622,970 - -2.3
2,622,972 + -0.8
2,622,972 + +1.0
2,622,972 + +1.4
2,622,973 - +0.5
2,622,973 - +1.7
2,622,973 - +0.1
2,622,973 - -1.0
2,622,973 - -0.5
2,623,026 + Echvi_2195 0.12 +0.2
2,623,029 + Echvi_2195 0.12 +1.2
2,623,030 - Echvi_2195 0.12 -1.1
2,623,041 - Echvi_2195 0.13 -0.5
2,623,086 - Echvi_2195 0.16 -0.1
2,623,089 - +2.2
2,623,138 - Echvi_2195 0.20 +0.7
2,623,154 + Echvi_2195 0.21 +1.3
2,623,218 + Echvi_2195 0.26 -0.4
2,623,218 + Echvi_2195 0.26 +0.9
2,623,238 + Echvi_2195 0.27 +0.5
2,623,386 - Echvi_2195 0.38 -0.3
2,623,386 - Echvi_2195 0.38 +1.8
2,623,408 + Echvi_2195 0.40 -0.6
2,623,409 - Echvi_2195 0.40 +0.7
2,623,498 + Echvi_2195 0.46 -0.7
2,623,503 + Echvi_2195 0.47 -0.0
2,623,719 + Echvi_2195 0.62 -0.8
2,623,719 + Echvi_2195 0.62 +0.2
2,623,719 + Echvi_2195 0.62 -0.2
2,623,719 + Echvi_2195 0.62 -0.7
2,623,720 - Echvi_2195 0.62 +1.2
2,623,723 + Echvi_2195 0.63 +0.1
2,623,723 + Echvi_2195 0.63 -0.2
2,623,725 + Echvi_2195 0.63 +0.2
2,623,726 - Echvi_2195 0.63 +0.4

Or see this region's nucleotide sequence