Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1951

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1948 and Echvi_1949 overlap by 4 nucleotidesEchvi_1949 and Echvi_1950 are separated by 12 nucleotidesEchvi_1950 and Echvi_1951 are separated by 11 nucleotidesEchvi_1951 and Echvi_1952 are separated by 83 nucleotides Echvi_1948: Echvi_1948 - hypothetical protein, at 2,291,343 to 2,291,669 _1948 Echvi_1949: Echvi_1949 - hypothetical protein, at 2,291,666 to 2,292,118 _1949 Echvi_1950: Echvi_1950 - hypothetical protein, at 2,292,131 to 2,292,439 _1950 Echvi_1951: Echvi_1951 - hypothetical protein, at 2,292,451 to 2,292,870 _1951 Echvi_1952: Echvi_1952 - RteC protein., at 2,292,954 to 2,293,799 _1952 Position (kb) 2292 2293Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2291.452 kb on + strand, within Echvi_1948at 2291.456 kb on + strand, within Echvi_1948at 2291.457 kb on - strand, within Echvi_1948at 2291.501 kb on + strand, within Echvi_1948at 2291.502 kb on - strand, within Echvi_1948at 2291.602 kb on + strand, within Echvi_1948at 2291.602 kb on + strand, within Echvi_1948at 2291.686 kb on + strandat 2291.780 kb on + strand, within Echvi_1949at 2291.782 kb on + strand, within Echvi_1949at 2291.783 kb on - strand, within Echvi_1949at 2291.956 kb on - strand, within Echvi_1949at 2291.986 kb on + strand, within Echvi_1949at 2292.047 kb on + strand, within Echvi_1949at 2292.047 kb on + strand, within Echvi_1949at 2292.052 kb on + strand, within Echvi_1949at 2292.053 kb on - strand, within Echvi_1949at 2292.054 kb on + strand, within Echvi_1949at 2292.054 kb on + strand, within Echvi_1949at 2292.054 kb on + strand, within Echvi_1949at 2292.054 kb on + strand, within Echvi_1949at 2292.054 kb on + strand, within Echvi_1949at 2292.055 kb on - strand, within Echvi_1949at 2292.055 kb on - strand, within Echvi_1949at 2292.119 kb on - strandat 2292.124 kb on - strandat 2292.244 kb on + strand, within Echvi_1950at 2292.291 kb on + strand, within Echvi_1950at 2292.291 kb on + strand, within Echvi_1950at 2292.291 kb on + strand, within Echvi_1950at 2292.427 kb on + strandat 2292.505 kb on + strand, within Echvi_1951at 2292.532 kb on + strand, within Echvi_1951at 2292.651 kb on + strand, within Echvi_1951at 2292.654 kb on + strand, within Echvi_1951at 2292.654 kb on + strand, within Echvi_1951at 2292.654 kb on + strand, within Echvi_1951at 2292.655 kb on - strand, within Echvi_1951at 2292.741 kb on + strand, within Echvi_1951at 2292.741 kb on + strand, within Echvi_1951at 2292.741 kb on + strand, within Echvi_1951at 2292.782 kb on + strand, within Echvi_1951at 2292.800 kb on + strand, within Echvi_1951at 2292.809 kb on + strand, within Echvi_1951at 2292.809 kb on + strand, within Echvi_1951at 2293.036 kb on + strandat 2293.176 kb on + strand, within Echvi_1952at 2293.184 kb on - strand, within Echvi_1952at 2293.282 kb on - strand, within Echvi_1952at 2293.282 kb on - strand, within Echvi_1952at 2293.409 kb on + strand, within Echvi_1952at 2293.451 kb on - strand, within Echvi_1952at 2293.480 kb on + strand, within Echvi_1952at 2293.557 kb on - strand, within Echvi_1952at 2293.558 kb on + strand, within Echvi_1952at 2293.558 kb on + strand, within Echvi_1952at 2293.559 kb on - strand, within Echvi_1952at 2293.559 kb on - strand, within Echvi_1952at 2293.559 kb on - strand, within Echvi_1952at 2293.559 kb on - strand, within Echvi_1952at 2293.562 kb on - strand, within Echvi_1952at 2293.621 kb on + strand, within Echvi_1952at 2293.621 kb on + strand, within Echvi_1952at 2293.656 kb on + strand, within Echvi_1952at 2293.730 kb on - strandat 2293.730 kb on - strandat 2293.730 kb on - strandat 2293.775 kb on - strandat 2293.775 kb on - strandat 2293.810 kb on - strandat 2293.810 kb on - strandat 2293.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,291,452 + Echvi_1948 0.33 +3.8
2,291,456 + Echvi_1948 0.35 +1.2
2,291,457 - Echvi_1948 0.35 -1.1
2,291,501 + Echvi_1948 0.48 -2.8
2,291,502 - Echvi_1948 0.49 -0.4
2,291,602 + Echvi_1948 0.79 -0.9
2,291,602 + Echvi_1948 0.79 +0.7
2,291,686 + -1.1
2,291,780 + Echvi_1949 0.25 -0.6
2,291,782 + Echvi_1949 0.26 -0.3
2,291,783 - Echvi_1949 0.26 +0.4
2,291,956 - Echvi_1949 0.64 -1.4
2,291,986 + Echvi_1949 0.71 -0.9
2,292,047 + Echvi_1949 0.84 -1.1
2,292,047 + Echvi_1949 0.84 +0.5
2,292,052 + Echvi_1949 0.85 +0.9
2,292,053 - Echvi_1949 0.85 +0.9
2,292,054 + Echvi_1949 0.86 -0.4
2,292,054 + Echvi_1949 0.86 +0.7
2,292,054 + Echvi_1949 0.86 +0.4
2,292,054 + Echvi_1949 0.86 +0.6
2,292,054 + Echvi_1949 0.86 -3.3
2,292,055 - Echvi_1949 0.86 -1.0
2,292,055 - Echvi_1949 0.86 -0.6
2,292,119 - -1.6
2,292,124 - +0.2
2,292,244 + Echvi_1950 0.37 +2.2
2,292,291 + Echvi_1950 0.52 -0.8
2,292,291 + Echvi_1950 0.52 +1.0
2,292,291 + Echvi_1950 0.52 +0.2
2,292,427 + +0.0
2,292,505 + Echvi_1951 0.13 -1.3
2,292,532 + Echvi_1951 0.19 -1.1
2,292,651 + Echvi_1951 0.48 +0.4
2,292,654 + Echvi_1951 0.48 -1.9
2,292,654 + Echvi_1951 0.48 -0.9
2,292,654 + Echvi_1951 0.48 -0.1
2,292,655 - Echvi_1951 0.49 -1.9
2,292,741 + Echvi_1951 0.69 -1.6
2,292,741 + Echvi_1951 0.69 -0.6
2,292,741 + Echvi_1951 0.69 -2.2
2,292,782 + Echvi_1951 0.79 -1.1
2,292,800 + Echvi_1951 0.83 -0.5
2,292,809 + Echvi_1951 0.85 +0.9
2,292,809 + Echvi_1951 0.85 -2.6
2,293,036 + +0.5
2,293,176 + Echvi_1952 0.26 +0.4
2,293,184 - Echvi_1952 0.27 -1.8
2,293,282 - Echvi_1952 0.39 -0.5
2,293,282 - Echvi_1952 0.39 -1.5
2,293,409 + Echvi_1952 0.54 +0.5
2,293,451 - Echvi_1952 0.59 +0.5
2,293,480 + Echvi_1952 0.62 -0.1
2,293,557 - Echvi_1952 0.71 -0.1
2,293,558 + Echvi_1952 0.71 +0.8
2,293,558 + Echvi_1952 0.71 +1.9
2,293,559 - Echvi_1952 0.72 +1.3
2,293,559 - Echvi_1952 0.72 -0.0
2,293,559 - Echvi_1952 0.72 +0.7
2,293,559 - Echvi_1952 0.72 -1.9
2,293,562 - Echvi_1952 0.72 -0.0
2,293,621 + Echvi_1952 0.79 -2.2
2,293,621 + Echvi_1952 0.79 +0.1
2,293,656 + Echvi_1952 0.83 +0.9
2,293,730 - +0.7
2,293,730 - -0.1
2,293,730 - -0.2
2,293,775 - +1.2
2,293,775 - -0.7
2,293,810 - +0.9
2,293,810 - +1.4
2,293,810 - +0.4

Or see this region's nucleotide sequence