Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1615

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1614 and Echvi_1615 are separated by 375 nucleotidesEchvi_1615 and Echvi_1616 are separated by 46 nucleotidesEchvi_1616 and Echvi_1617 are separated by 12 nucleotides Echvi_1614: Echvi_1614 - Transcriptional regulators, at 1,857,734 to 1,858,789 _1614 Echvi_1615: Echvi_1615 - Esterase/lipase, at 1,859,165 to 1,860,082 _1615 Echvi_1616: Echvi_1616 - hypothetical protein, at 1,860,129 to 1,860,314 _1616 Echvi_1617: Echvi_1617 - L-rhamnose transporter (from data), at 1,860,327 to 1,861,769 _1617 Position (kb) 1859 1860 1861Strain fitness (log2 ratio) -2 -1 0 1 2at 1858.197 kb on + strand, within Echvi_1614at 1858.233 kb on + strand, within Echvi_1614at 1858.234 kb on - strand, within Echvi_1614at 1858.234 kb on - strand, within Echvi_1614at 1858.300 kb on - strand, within Echvi_1614at 1858.300 kb on - strand, within Echvi_1614at 1858.327 kb on + strand, within Echvi_1614at 1858.351 kb on + strand, within Echvi_1614at 1858.352 kb on - strand, within Echvi_1614at 1858.356 kb on + strand, within Echvi_1614at 1858.357 kb on - strand, within Echvi_1614at 1858.357 kb on - strand, within Echvi_1614at 1858.411 kb on - strand, within Echvi_1614at 1858.411 kb on - strand, within Echvi_1614at 1858.465 kb on - strand, within Echvi_1614at 1858.478 kb on - strand, within Echvi_1614at 1858.478 kb on - strand, within Echvi_1614at 1858.479 kb on + strand, within Echvi_1614at 1858.493 kb on - strand, within Echvi_1614at 1858.509 kb on - strand, within Echvi_1614at 1858.509 kb on - strand, within Echvi_1614at 1858.545 kb on + strand, within Echvi_1614at 1858.546 kb on - strand, within Echvi_1614at 1858.546 kb on - strand, within Echvi_1614at 1858.546 kb on - strand, within Echvi_1614at 1858.555 kb on + strand, within Echvi_1614at 1858.555 kb on + strand, within Echvi_1614at 1858.556 kb on - strand, within Echvi_1614at 1858.556 kb on - strand, within Echvi_1614at 1858.556 kb on - strand, within Echvi_1614at 1858.556 kb on - strand, within Echvi_1614at 1858.560 kb on - strand, within Echvi_1614at 1858.597 kb on + strand, within Echvi_1614at 1858.597 kb on + strand, within Echvi_1614at 1858.598 kb on - strand, within Echvi_1614at 1858.598 kb on - strand, within Echvi_1614at 1858.599 kb on + strand, within Echvi_1614at 1858.600 kb on - strand, within Echvi_1614at 1858.629 kb on + strand, within Echvi_1614at 1858.630 kb on - strand, within Echvi_1614at 1858.633 kb on - strand, within Echvi_1614at 1858.633 kb on - strand, within Echvi_1614at 1858.661 kb on + strand, within Echvi_1614at 1858.702 kb on + strandat 1858.702 kb on + strandat 1858.702 kb on + strandat 1858.703 kb on - strandat 1858.703 kb on - strandat 1858.778 kb on + strandat 1858.781 kb on + strandat 1858.781 kb on + strandat 1858.782 kb on - strandat 1858.790 kb on - strandat 1858.790 kb on - strandat 1858.811 kb on - strandat 1858.813 kb on + strandat 1858.814 kb on - strandat 1858.821 kb on + strandat 1858.836 kb on + strandat 1858.866 kb on + strandat 1858.887 kb on + strandat 1858.887 kb on + strandat 1858.887 kb on + strandat 1858.888 kb on - strandat 1858.894 kb on - strandat 1858.999 kb on + strandat 1859.001 kb on + strandat 1859.001 kb on + strandat 1859.002 kb on - strandat 1859.005 kb on + strandat 1859.005 kb on + strandat 1859.064 kb on - strandat 1859.069 kb on - strandat 1859.093 kb on + strandat 1859.094 kb on - strandat 1859.112 kb on - strandat 1859.141 kb on - strandat 1859.207 kb on + strandat 1859.207 kb on + strandat 1859.395 kb on + strand, within Echvi_1615at 1859.395 kb on + strand, within Echvi_1615at 1859.427 kb on + strand, within Echvi_1615at 1859.625 kb on - strand, within Echvi_1615at 1859.770 kb on + strand, within Echvi_1615at 1859.773 kb on - strand, within Echvi_1615at 1859.799 kb on - strand, within Echvi_1615at 1859.833 kb on + strand, within Echvi_1615at 1859.833 kb on + strand, within Echvi_1615at 1859.835 kb on + strand, within Echvi_1615at 1859.835 kb on + strand, within Echvi_1615at 1859.964 kb on - strand, within Echvi_1615at 1860.046 kb on + strandat 1860.095 kb on - strandat 1860.095 kb on - strandat 1860.110 kb on + strandat 1860.110 kb on + strandat 1860.111 kb on - strandat 1860.130 kb on + strandat 1860.180 kb on - strand, within Echvi_1616at 1860.198 kb on + strand, within Echvi_1616at 1860.198 kb on + strand, within Echvi_1616at 1860.198 kb on + strand, within Echvi_1616at 1860.199 kb on - strand, within Echvi_1616at 1860.200 kb on + strand, within Echvi_1616at 1860.264 kb on + strand, within Echvi_1616at 1860.264 kb on + strand, within Echvi_1616at 1860.271 kb on - strand, within Echvi_1616at 1860.291 kb on + strand, within Echvi_1616at 1860.294 kb on + strand, within Echvi_1616at 1860.300 kb on - strandat 1860.415 kb on + strandat 1860.415 kb on + strandat 1860.416 kb on - strandat 1860.536 kb on + strand, within Echvi_1617at 1860.566 kb on + strand, within Echvi_1617at 1860.663 kb on + strand, within Echvi_1617at 1860.664 kb on - strand, within Echvi_1617at 1860.783 kb on + strand, within Echvi_1617at 1860.783 kb on + strand, within Echvi_1617at 1860.784 kb on - strand, within Echvi_1617at 1860.784 kb on - strand, within Echvi_1617at 1860.860 kb on + strand, within Echvi_1617at 1860.915 kb on + strand, within Echvi_1617at 1860.915 kb on + strand, within Echvi_1617at 1860.915 kb on + strand, within Echvi_1617at 1860.943 kb on + strand, within Echvi_1617at 1860.943 kb on + strand, within Echvi_1617at 1860.943 kb on + strand, within Echvi_1617at 1860.944 kb on - strand, within Echvi_1617at 1861.001 kb on - strand, within Echvi_1617at 1861.005 kb on + strand, within Echvi_1617at 1861.046 kb on + strand, within Echvi_1617at 1861.046 kb on + strand, within Echvi_1617at 1861.046 kb on + strand, within Echvi_1617

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
1,858,197 + Echvi_1614 0.44 -0.8
1,858,233 + Echvi_1614 0.47 +0.2
1,858,234 - Echvi_1614 0.47 +1.4
1,858,234 - Echvi_1614 0.47 -1.1
1,858,300 - Echvi_1614 0.54 +0.7
1,858,300 - Echvi_1614 0.54 -0.3
1,858,327 + Echvi_1614 0.56 -0.3
1,858,351 + Echvi_1614 0.58 -0.7
1,858,352 - Echvi_1614 0.59 -1.9
1,858,356 + Echvi_1614 0.59 +0.3
1,858,357 - Echvi_1614 0.59 +0.9
1,858,357 - Echvi_1614 0.59 +0.1
1,858,411 - Echvi_1614 0.64 -1.6
1,858,411 - Echvi_1614 0.64 -0.2
1,858,465 - Echvi_1614 0.69 -0.5
1,858,478 - Echvi_1614 0.70 -0.9
1,858,478 - Echvi_1614 0.70 +0.1
1,858,479 + Echvi_1614 0.71 -2.1
1,858,493 - Echvi_1614 0.72 -0.3
1,858,509 - Echvi_1614 0.73 +0.3
1,858,509 - Echvi_1614 0.73 -0.5
1,858,545 + Echvi_1614 0.77 +0.3
1,858,546 - Echvi_1614 0.77 -1.6
1,858,546 - Echvi_1614 0.77 -0.1
1,858,546 - Echvi_1614 0.77 -1.3
1,858,555 + Echvi_1614 0.78 -0.5
1,858,555 + Echvi_1614 0.78 +0.7
1,858,556 - Echvi_1614 0.78 +0.3
1,858,556 - Echvi_1614 0.78 -0.8
1,858,556 - Echvi_1614 0.78 +0.7
1,858,556 - Echvi_1614 0.78 +0.3
1,858,560 - Echvi_1614 0.78 -0.7
1,858,597 + Echvi_1614 0.82 -0.2
1,858,597 + Echvi_1614 0.82 -1.0
1,858,598 - Echvi_1614 0.82 +0.0
1,858,598 - Echvi_1614 0.82 +0.6
1,858,599 + Echvi_1614 0.82 -1.1
1,858,600 - Echvi_1614 0.82 +0.6
1,858,629 + Echvi_1614 0.85 -0.4
1,858,630 - Echvi_1614 0.85 +0.4
1,858,633 - Echvi_1614 0.85 +0.3
1,858,633 - Echvi_1614 0.85 -2.0
1,858,661 + Echvi_1614 0.88 +1.3
1,858,702 + +0.7
1,858,702 + +0.2
1,858,702 + +0.6
1,858,703 - +0.6
1,858,703 - -0.6
1,858,778 + +0.0
1,858,781 + -1.7
1,858,781 + -0.9
1,858,782 - +0.2
1,858,790 - -1.6
1,858,790 - -0.1
1,858,811 - -0.6
1,858,813 + +0.5
1,858,814 - -0.6
1,858,821 + -0.4
1,858,836 + -0.4
1,858,866 + -0.6
1,858,887 + +0.0
1,858,887 + -1.4
1,858,887 + -0.4
1,858,888 - +0.6
1,858,894 - +1.1
1,858,999 + -0.4
1,859,001 + -0.4
1,859,001 + +0.7
1,859,002 - -0.8
1,859,005 + -0.1
1,859,005 + +0.6
1,859,064 - -1.6
1,859,069 - -1.9
1,859,093 + -1.7
1,859,094 - -0.4
1,859,112 - +1.2
1,859,141 - -0.4
1,859,207 + -0.4
1,859,207 + +0.2
1,859,395 + Echvi_1615 0.25 -1.0
1,859,395 + Echvi_1615 0.25 +0.6
1,859,427 + Echvi_1615 0.29 -1.1
1,859,625 - Echvi_1615 0.50 -1.4
1,859,770 + Echvi_1615 0.66 -2.4
1,859,773 - Echvi_1615 0.66 -0.8
1,859,799 - Echvi_1615 0.69 -1.9
1,859,833 + Echvi_1615 0.73 +0.7
1,859,833 + Echvi_1615 0.73 -1.0
1,859,835 + Echvi_1615 0.73 +1.2
1,859,835 + Echvi_1615 0.73 -0.7
1,859,964 - Echvi_1615 0.87 -0.6
1,860,046 + -0.2
1,860,095 - +0.3
1,860,095 - -0.4
1,860,110 + +0.2
1,860,110 + +1.3
1,860,111 - +1.5
1,860,130 + -1.2
1,860,180 - Echvi_1616 0.27 +0.1
1,860,198 + Echvi_1616 0.37 +0.4
1,860,198 + Echvi_1616 0.37 +0.8
1,860,198 + Echvi_1616 0.37 +0.7
1,860,199 - Echvi_1616 0.38 -0.4
1,860,200 + Echvi_1616 0.38 +0.2
1,860,264 + Echvi_1616 0.73 -2.0
1,860,264 + Echvi_1616 0.73 +0.4
1,860,271 - Echvi_1616 0.76 -1.5
1,860,291 + Echvi_1616 0.87 +0.1
1,860,294 + Echvi_1616 0.89 +1.0
1,860,300 - +0.7
1,860,415 + +0.7
1,860,415 + -1.3
1,860,416 - +0.5
1,860,536 + Echvi_1617 0.14 -2.3
1,860,566 + Echvi_1617 0.17 -0.9
1,860,663 + Echvi_1617 0.23 +0.7
1,860,664 - Echvi_1617 0.23 -0.2
1,860,783 + Echvi_1617 0.32 -0.4
1,860,783 + Echvi_1617 0.32 +0.3
1,860,784 - Echvi_1617 0.32 -0.3
1,860,784 - Echvi_1617 0.32 +0.9
1,860,860 + Echvi_1617 0.37 +0.0
1,860,915 + Echvi_1617 0.41 +0.4
1,860,915 + Echvi_1617 0.41 -0.4
1,860,915 + Echvi_1617 0.41 +0.1
1,860,943 + Echvi_1617 0.43 -0.8
1,860,943 + Echvi_1617 0.43 +1.2
1,860,943 + Echvi_1617 0.43 -1.4
1,860,944 - Echvi_1617 0.43 -0.0
1,861,001 - Echvi_1617 0.47 -2.0
1,861,005 + Echvi_1617 0.47 +2.2
1,861,046 + Echvi_1617 0.50 +0.1
1,861,046 + Echvi_1617 0.50 -0.2
1,861,046 + Echvi_1617 0.50 -0.4

Or see this region's nucleotide sequence