Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1614 and Echvi_1615 are separated by 375 nucleotides Echvi_1615 and Echvi_1616 are separated by 46 nucleotides Echvi_1616 and Echvi_1617 are separated by 12 nucleotides
Echvi_1614: Echvi_1614 - Transcriptional regulators, at 1,857,734 to 1,858,789
_1614
Echvi_1615: Echvi_1615 - Esterase/lipase, at 1,859,165 to 1,860,082
_1615
Echvi_1616: Echvi_1616 - hypothetical protein, at 1,860,129 to 1,860,314
_1616
Echvi_1617: Echvi_1617 - L-rhamnose transporter (from data) , at 1,860,327 to 1,861,769
_1617
Position (kb)
1859
1860
1861 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1858.197 kb on + strand, within Echvi_1614 at 1858.233 kb on + strand, within Echvi_1614 at 1858.234 kb on - strand, within Echvi_1614 at 1858.234 kb on - strand, within Echvi_1614 at 1858.300 kb on - strand, within Echvi_1614 at 1858.300 kb on - strand, within Echvi_1614 at 1858.327 kb on + strand, within Echvi_1614 at 1858.351 kb on + strand, within Echvi_1614 at 1858.352 kb on - strand, within Echvi_1614 at 1858.356 kb on + strand, within Echvi_1614 at 1858.357 kb on - strand, within Echvi_1614 at 1858.357 kb on - strand, within Echvi_1614 at 1858.411 kb on - strand, within Echvi_1614 at 1858.411 kb on - strand, within Echvi_1614 at 1858.465 kb on - strand, within Echvi_1614 at 1858.478 kb on - strand, within Echvi_1614 at 1858.478 kb on - strand, within Echvi_1614 at 1858.479 kb on + strand, within Echvi_1614 at 1858.493 kb on - strand, within Echvi_1614 at 1858.509 kb on - strand, within Echvi_1614 at 1858.509 kb on - strand, within Echvi_1614 at 1858.545 kb on + strand, within Echvi_1614 at 1858.546 kb on - strand, within Echvi_1614 at 1858.546 kb on - strand, within Echvi_1614 at 1858.546 kb on - strand, within Echvi_1614 at 1858.555 kb on + strand, within Echvi_1614 at 1858.555 kb on + strand, within Echvi_1614 at 1858.556 kb on - strand, within Echvi_1614 at 1858.556 kb on - strand, within Echvi_1614 at 1858.556 kb on - strand, within Echvi_1614 at 1858.556 kb on - strand, within Echvi_1614 at 1858.560 kb on - strand, within Echvi_1614 at 1858.597 kb on + strand, within Echvi_1614 at 1858.597 kb on + strand, within Echvi_1614 at 1858.598 kb on - strand, within Echvi_1614 at 1858.598 kb on - strand, within Echvi_1614 at 1858.599 kb on + strand, within Echvi_1614 at 1858.600 kb on - strand, within Echvi_1614 at 1858.629 kb on + strand, within Echvi_1614 at 1858.630 kb on - strand, within Echvi_1614 at 1858.633 kb on - strand, within Echvi_1614 at 1858.633 kb on - strand, within Echvi_1614 at 1858.661 kb on + strand, within Echvi_1614 at 1858.702 kb on + strand at 1858.702 kb on + strand at 1858.702 kb on + strand at 1858.703 kb on - strand at 1858.703 kb on - strand at 1858.778 kb on + strand at 1858.781 kb on + strand at 1858.781 kb on + strand at 1858.782 kb on - strand at 1858.790 kb on - strand at 1858.790 kb on - strand at 1858.811 kb on - strand at 1858.813 kb on + strand at 1858.814 kb on - strand at 1858.821 kb on + strand at 1858.836 kb on + strand at 1858.866 kb on + strand at 1858.887 kb on + strand at 1858.887 kb on + strand at 1858.887 kb on + strand at 1858.888 kb on - strand at 1858.894 kb on - strand at 1858.999 kb on + strand at 1859.001 kb on + strand at 1859.001 kb on + strand at 1859.002 kb on - strand at 1859.005 kb on + strand at 1859.005 kb on + strand at 1859.064 kb on - strand at 1859.069 kb on - strand at 1859.093 kb on + strand at 1859.094 kb on - strand at 1859.112 kb on - strand at 1859.141 kb on - strand at 1859.207 kb on + strand at 1859.207 kb on + strand at 1859.395 kb on + strand, within Echvi_1615 at 1859.395 kb on + strand, within Echvi_1615 at 1859.427 kb on + strand, within Echvi_1615 at 1859.625 kb on - strand, within Echvi_1615 at 1859.770 kb on + strand, within Echvi_1615 at 1859.773 kb on - strand, within Echvi_1615 at 1859.799 kb on - strand, within Echvi_1615 at 1859.833 kb on + strand, within Echvi_1615 at 1859.833 kb on + strand, within Echvi_1615 at 1859.835 kb on + strand, within Echvi_1615 at 1859.835 kb on + strand, within Echvi_1615 at 1859.964 kb on - strand, within Echvi_1615 at 1860.046 kb on + strand at 1860.095 kb on - strand at 1860.095 kb on - strand at 1860.110 kb on + strand at 1860.110 kb on + strand at 1860.111 kb on - strand at 1860.130 kb on + strand at 1860.180 kb on - strand, within Echvi_1616 at 1860.198 kb on + strand, within Echvi_1616 at 1860.198 kb on + strand, within Echvi_1616 at 1860.198 kb on + strand, within Echvi_1616 at 1860.199 kb on - strand, within Echvi_1616 at 1860.200 kb on + strand, within Echvi_1616 at 1860.264 kb on + strand, within Echvi_1616 at 1860.264 kb on + strand, within Echvi_1616 at 1860.271 kb on - strand, within Echvi_1616 at 1860.291 kb on + strand, within Echvi_1616 at 1860.294 kb on + strand, within Echvi_1616 at 1860.300 kb on - strand at 1860.415 kb on + strand at 1860.415 kb on + strand at 1860.416 kb on - strand at 1860.536 kb on + strand, within Echvi_1617 at 1860.566 kb on + strand, within Echvi_1617 at 1860.663 kb on + strand, within Echvi_1617 at 1860.664 kb on - strand, within Echvi_1617 at 1860.783 kb on + strand, within Echvi_1617 at 1860.783 kb on + strand, within Echvi_1617 at 1860.784 kb on - strand, within Echvi_1617 at 1860.784 kb on - strand, within Echvi_1617 at 1860.860 kb on + strand, within Echvi_1617 at 1860.915 kb on + strand, within Echvi_1617 at 1860.915 kb on + strand, within Echvi_1617 at 1860.915 kb on + strand, within Echvi_1617 at 1860.943 kb on + strand, within Echvi_1617 at 1860.943 kb on + strand, within Echvi_1617 at 1860.943 kb on + strand, within Echvi_1617 at 1860.944 kb on - strand, within Echvi_1617 at 1861.001 kb on - strand, within Echvi_1617 at 1861.005 kb on + strand, within Echvi_1617 at 1861.046 kb on + strand, within Echvi_1617 at 1861.046 kb on + strand, within Echvi_1617 at 1861.046 kb on + strand, within Echvi_1617
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 1,858,197 + Echvi_1614 0.44 -0.8 1,858,233 + Echvi_1614 0.47 +0.2 1,858,234 - Echvi_1614 0.47 +1.4 1,858,234 - Echvi_1614 0.47 -1.1 1,858,300 - Echvi_1614 0.54 +0.7 1,858,300 - Echvi_1614 0.54 -0.3 1,858,327 + Echvi_1614 0.56 -0.3 1,858,351 + Echvi_1614 0.58 -0.7 1,858,352 - Echvi_1614 0.59 -1.9 1,858,356 + Echvi_1614 0.59 +0.3 1,858,357 - Echvi_1614 0.59 +0.9 1,858,357 - Echvi_1614 0.59 +0.1 1,858,411 - Echvi_1614 0.64 -1.6 1,858,411 - Echvi_1614 0.64 -0.2 1,858,465 - Echvi_1614 0.69 -0.5 1,858,478 - Echvi_1614 0.70 -0.9 1,858,478 - Echvi_1614 0.70 +0.1 1,858,479 + Echvi_1614 0.71 -2.1 1,858,493 - Echvi_1614 0.72 -0.3 1,858,509 - Echvi_1614 0.73 +0.3 1,858,509 - Echvi_1614 0.73 -0.5 1,858,545 + Echvi_1614 0.77 +0.3 1,858,546 - Echvi_1614 0.77 -1.6 1,858,546 - Echvi_1614 0.77 -0.1 1,858,546 - Echvi_1614 0.77 -1.3 1,858,555 + Echvi_1614 0.78 -0.5 1,858,555 + Echvi_1614 0.78 +0.7 1,858,556 - Echvi_1614 0.78 +0.3 1,858,556 - Echvi_1614 0.78 -0.8 1,858,556 - Echvi_1614 0.78 +0.7 1,858,556 - Echvi_1614 0.78 +0.3 1,858,560 - Echvi_1614 0.78 -0.7 1,858,597 + Echvi_1614 0.82 -0.2 1,858,597 + Echvi_1614 0.82 -1.0 1,858,598 - Echvi_1614 0.82 +0.0 1,858,598 - Echvi_1614 0.82 +0.6 1,858,599 + Echvi_1614 0.82 -1.1 1,858,600 - Echvi_1614 0.82 +0.6 1,858,629 + Echvi_1614 0.85 -0.4 1,858,630 - Echvi_1614 0.85 +0.4 1,858,633 - Echvi_1614 0.85 +0.3 1,858,633 - Echvi_1614 0.85 -2.0 1,858,661 + Echvi_1614 0.88 +1.3 1,858,702 + +0.7 1,858,702 + +0.2 1,858,702 + +0.6 1,858,703 - +0.6 1,858,703 - -0.6 1,858,778 + +0.0 1,858,781 + -1.7 1,858,781 + -0.9 1,858,782 - +0.2 1,858,790 - -1.6 1,858,790 - -0.1 1,858,811 - -0.6 1,858,813 + +0.5 1,858,814 - -0.6 1,858,821 + -0.4 1,858,836 + -0.4 1,858,866 + -0.6 1,858,887 + +0.0 1,858,887 + -1.4 1,858,887 + -0.4 1,858,888 - +0.6 1,858,894 - +1.1 1,858,999 + -0.4 1,859,001 + -0.4 1,859,001 + +0.7 1,859,002 - -0.8 1,859,005 + -0.1 1,859,005 + +0.6 1,859,064 - -1.6 1,859,069 - -1.9 1,859,093 + -1.7 1,859,094 - -0.4 1,859,112 - +1.2 1,859,141 - -0.4 1,859,207 + -0.4 1,859,207 + +0.2 1,859,395 + Echvi_1615 0.25 -1.0 1,859,395 + Echvi_1615 0.25 +0.6 1,859,427 + Echvi_1615 0.29 -1.1 1,859,625 - Echvi_1615 0.50 -1.4 1,859,770 + Echvi_1615 0.66 -2.4 1,859,773 - Echvi_1615 0.66 -0.8 1,859,799 - Echvi_1615 0.69 -1.9 1,859,833 + Echvi_1615 0.73 +0.7 1,859,833 + Echvi_1615 0.73 -1.0 1,859,835 + Echvi_1615 0.73 +1.2 1,859,835 + Echvi_1615 0.73 -0.7 1,859,964 - Echvi_1615 0.87 -0.6 1,860,046 + -0.2 1,860,095 - +0.3 1,860,095 - -0.4 1,860,110 + +0.2 1,860,110 + +1.3 1,860,111 - +1.5 1,860,130 + -1.2 1,860,180 - Echvi_1616 0.27 +0.1 1,860,198 + Echvi_1616 0.37 +0.4 1,860,198 + Echvi_1616 0.37 +0.8 1,860,198 + Echvi_1616 0.37 +0.7 1,860,199 - Echvi_1616 0.38 -0.4 1,860,200 + Echvi_1616 0.38 +0.2 1,860,264 + Echvi_1616 0.73 -2.0 1,860,264 + Echvi_1616 0.73 +0.4 1,860,271 - Echvi_1616 0.76 -1.5 1,860,291 + Echvi_1616 0.87 +0.1 1,860,294 + Echvi_1616 0.89 +1.0 1,860,300 - +0.7 1,860,415 + +0.7 1,860,415 + -1.3 1,860,416 - +0.5 1,860,536 + Echvi_1617 0.14 -2.3 1,860,566 + Echvi_1617 0.17 -0.9 1,860,663 + Echvi_1617 0.23 +0.7 1,860,664 - Echvi_1617 0.23 -0.2 1,860,783 + Echvi_1617 0.32 -0.4 1,860,783 + Echvi_1617 0.32 +0.3 1,860,784 - Echvi_1617 0.32 -0.3 1,860,784 - Echvi_1617 0.32 +0.9 1,860,860 + Echvi_1617 0.37 +0.0 1,860,915 + Echvi_1617 0.41 +0.4 1,860,915 + Echvi_1617 0.41 -0.4 1,860,915 + Echvi_1617 0.41 +0.1 1,860,943 + Echvi_1617 0.43 -0.8 1,860,943 + Echvi_1617 0.43 +1.2 1,860,943 + Echvi_1617 0.43 -1.4 1,860,944 - Echvi_1617 0.43 -0.0 1,861,001 - Echvi_1617 0.47 -2.0 1,861,005 + Echvi_1617 0.47 +2.2 1,861,046 + Echvi_1617 0.50 +0.1 1,861,046 + Echvi_1617 0.50 -0.2 1,861,046 + Echvi_1617 0.50 -0.4
Or see this region's nucleotide sequence