Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1426

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1425 and Echvi_1426 are separated by 49 nucleotidesEchvi_1426 and Echvi_1427 are separated by 17 nucleotides Echvi_1425: Echvi_1425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,636,620 to 1,637,615 _1425 Echvi_1426: Echvi_1426 - S1/P1 Nuclease., at 1,637,665 to 1,638,435 _1426 Echvi_1427: Echvi_1427 - putative N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) (from data), at 1,638,453 to 1,639,646 _1427 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -2 -1 0 1 2at 1636.673 kb on - strandat 1636.673 kb on - strandat 1636.673 kb on - strandat 1636.747 kb on + strand, within Echvi_1425at 1636.748 kb on - strand, within Echvi_1425at 1636.757 kb on - strand, within Echvi_1425at 1636.833 kb on - strand, within Echvi_1425at 1636.917 kb on - strand, within Echvi_1425at 1636.928 kb on + strand, within Echvi_1425at 1636.929 kb on - strand, within Echvi_1425at 1637.103 kb on + strand, within Echvi_1425at 1637.103 kb on + strand, within Echvi_1425at 1637.104 kb on - strand, within Echvi_1425at 1637.146 kb on - strand, within Echvi_1425at 1637.202 kb on - strand, within Echvi_1425at 1637.210 kb on + strand, within Echvi_1425at 1637.278 kb on + strand, within Echvi_1425at 1637.298 kb on - strand, within Echvi_1425at 1637.298 kb on - strand, within Echvi_1425at 1637.319 kb on - strand, within Echvi_1425at 1637.363 kb on + strand, within Echvi_1425at 1637.402 kb on + strand, within Echvi_1425at 1637.402 kb on + strand, within Echvi_1425at 1637.403 kb on - strand, within Echvi_1425at 1637.417 kb on + strand, within Echvi_1425at 1637.417 kb on + strand, within Echvi_1425at 1637.417 kb on + strand, within Echvi_1425at 1637.418 kb on - strand, within Echvi_1425at 1637.418 kb on - strand, within Echvi_1425at 1637.418 kb on - strand, within Echvi_1425at 1637.418 kb on - strand, within Echvi_1425at 1637.418 kb on - strand, within Echvi_1425at 1637.485 kb on + strand, within Echvi_1425at 1637.485 kb on + strandat 1637.485 kb on + strand, within Echvi_1425at 1637.490 kb on + strand, within Echvi_1425at 1637.491 kb on - strand, within Echvi_1425at 1637.491 kb on - strand, within Echvi_1425at 1637.503 kb on - strand, within Echvi_1425at 1637.504 kb on + strand, within Echvi_1425at 1637.505 kb on - strand, within Echvi_1425at 1637.560 kb on + strandat 1637.561 kb on - strandat 1637.577 kb on + strandat 1637.577 kb on + strandat 1637.578 kb on - strandat 1637.578 kb on - strandat 1637.578 kb on - strandat 1637.578 kb on - strandat 1637.578 kb on - strandat 1637.578 kb on - strandat 1637.608 kb on + strandat 1637.632 kb on + strandat 1637.655 kb on + strandat 1637.656 kb on - strandat 1637.656 kb on - strandat 1637.747 kb on + strand, within Echvi_1426at 1637.748 kb on - strand, within Echvi_1426at 1637.748 kb on - strand, within Echvi_1426at 1637.760 kb on - strand, within Echvi_1426at 1637.835 kb on - strand, within Echvi_1426at 1637.975 kb on + strand, within Echvi_1426at 1637.975 kb on + strand, within Echvi_1426at 1637.976 kb on - strand, within Echvi_1426at 1638.051 kb on + strand, within Echvi_1426at 1638.127 kb on + strand, within Echvi_1426at 1638.140 kb on + strand, within Echvi_1426at 1638.213 kb on + strand, within Echvi_1426at 1638.215 kb on + strand, within Echvi_1426at 1638.215 kb on + strand, within Echvi_1426at 1638.215 kb on + strand, within Echvi_1426at 1638.216 kb on - strand, within Echvi_1426at 1638.216 kb on - strand, within Echvi_1426at 1638.216 kb on - strand, within Echvi_1426at 1638.216 kb on - strand, within Echvi_1426at 1638.216 kb on - strand, within Echvi_1426at 1638.221 kb on + strand, within Echvi_1426at 1638.227 kb on + strand, within Echvi_1426at 1638.227 kb on + strand, within Echvi_1426at 1638.227 kb on + strand, within Echvi_1426at 1638.227 kb on + strand, within Echvi_1426at 1638.228 kb on - strand, within Echvi_1426at 1638.228 kb on - strand, within Echvi_1426at 1638.435 kb on + strandat 1638.435 kb on + strandat 1638.436 kb on - strandat 1638.450 kb on + strandat 1638.451 kb on - strandat 1638.454 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,636,673 - -0.9
1,636,673 - +0.6
1,636,673 - +0.6
1,636,747 + Echvi_1425 0.13 -1.0
1,636,748 - Echvi_1425 0.13 +0.7
1,636,757 - Echvi_1425 0.14 -2.2
1,636,833 - Echvi_1425 0.21 +0.9
1,636,917 - Echvi_1425 0.30 -1.2
1,636,928 + Echvi_1425 0.31 +0.5
1,636,929 - Echvi_1425 0.31 -1.2
1,637,103 + Echvi_1425 0.48 +1.0
1,637,103 + Echvi_1425 0.48 +0.9
1,637,104 - Echvi_1425 0.49 -0.7
1,637,146 - Echvi_1425 0.53 -0.5
1,637,202 - Echvi_1425 0.58 -0.6
1,637,210 + Echvi_1425 0.59 +0.2
1,637,278 + Echvi_1425 0.66 +0.3
1,637,298 - Echvi_1425 0.68 -0.5
1,637,298 - Echvi_1425 0.68 +0.9
1,637,319 - Echvi_1425 0.70 -0.8
1,637,363 + Echvi_1425 0.75 -0.0
1,637,402 + Echvi_1425 0.79 -0.9
1,637,402 + Echvi_1425 0.79 -0.1
1,637,403 - Echvi_1425 0.79 -0.1
1,637,417 + Echvi_1425 0.80 +1.2
1,637,417 + Echvi_1425 0.80 -1.6
1,637,417 + Echvi_1425 0.80 -0.4
1,637,418 - Echvi_1425 0.80 +0.2
1,637,418 - Echvi_1425 0.80 +0.7
1,637,418 - Echvi_1425 0.80 +0.9
1,637,418 - Echvi_1425 0.80 +0.1
1,637,418 - Echvi_1425 0.80 +0.2
1,637,485 + Echvi_1425 0.87 -0.9
1,637,485 + +1.2
1,637,485 + Echvi_1425 0.87 -2.1
1,637,490 + Echvi_1425 0.87 -1.3
1,637,491 - Echvi_1425 0.87 +0.3
1,637,491 - Echvi_1425 0.87 +0.2
1,637,503 - Echvi_1425 0.89 -0.1
1,637,504 + Echvi_1425 0.89 -1.2
1,637,505 - Echvi_1425 0.89 +0.2
1,637,560 + +1.2
1,637,561 - -0.6
1,637,577 + +2.6
1,637,577 + +0.7
1,637,578 - +0.2
1,637,578 - +0.4
1,637,578 - -0.1
1,637,578 - +1.4
1,637,578 - -0.7
1,637,578 - -1.1
1,637,608 + -0.6
1,637,632 + -1.6
1,637,655 + +0.5
1,637,656 - +2.2
1,637,656 - -1.2
1,637,747 + Echvi_1426 0.11 +1.1
1,637,748 - Echvi_1426 0.11 +0.2
1,637,748 - Echvi_1426 0.11 -1.1
1,637,760 - Echvi_1426 0.12 -0.6
1,637,835 - Echvi_1426 0.22 +0.9
1,637,975 + Echvi_1426 0.40 +0.6
1,637,975 + Echvi_1426 0.40 -0.5
1,637,976 - Echvi_1426 0.40 +1.8
1,638,051 + Echvi_1426 0.50 +1.2
1,638,127 + Echvi_1426 0.60 +0.9
1,638,140 + Echvi_1426 0.62 +0.0
1,638,213 + Echvi_1426 0.71 +0.5
1,638,215 + Echvi_1426 0.71 +0.4
1,638,215 + Echvi_1426 0.71 -0.6
1,638,215 + Echvi_1426 0.71 +0.1
1,638,216 - Echvi_1426 0.71 +0.4
1,638,216 - Echvi_1426 0.71 +0.6
1,638,216 - Echvi_1426 0.71 +0.5
1,638,216 - Echvi_1426 0.71 -1.1
1,638,216 - Echvi_1426 0.71 +0.0
1,638,221 + Echvi_1426 0.72 -0.4
1,638,227 + Echvi_1426 0.73 -1.6
1,638,227 + Echvi_1426 0.73 +0.2
1,638,227 + Echvi_1426 0.73 +0.3
1,638,227 + Echvi_1426 0.73 -0.6
1,638,228 - Echvi_1426 0.73 -0.3
1,638,228 - Echvi_1426 0.73 -0.9
1,638,435 + -0.4
1,638,435 + +0.2
1,638,436 - -2.6
1,638,450 + +1.5
1,638,451 - +0.5
1,638,454 + -0.2

Or see this region's nucleotide sequence