Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0284

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0283 and Echvi_0284 are separated by 216 nucleotidesEchvi_0284 and Echvi_0285 are separated by 6 nucleotidesEchvi_0285 and Echvi_0286 are separated by 17 nucleotidesEchvi_0286 and Echvi_0287 are separated by 29 nucleotides Echvi_0283: Echvi_0283 - PAP2 superfamily., at 294,587 to 295,933 _0283 Echvi_0284: Echvi_0284 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 296,150 to 296,716 _0284 Echvi_0285: Echvi_0285 - guanylate kinase, at 296,723 to 297,295 _0285 Echvi_0286: Echvi_0286 - hypothetical protein, at 297,313 to 297,585 _0286 Echvi_0287: Echvi_0287 - RNA polymerase sigma factor, sigma-70 family, at 297,615 to 298,205 _0287 Position (kb) 296 297Strain fitness (log2 ratio) -2 -1 0 1at 295.184 kb on + strand, within Echvi_0283at 295.185 kb on - strand, within Echvi_0283at 295.302 kb on - strand, within Echvi_0283at 295.302 kb on - strand, within Echvi_0283at 295.308 kb on + strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.309 kb on - strand, within Echvi_0283at 295.508 kb on - strand, within Echvi_0283at 295.589 kb on + strand, within Echvi_0283at 295.641 kb on - strand, within Echvi_0283at 295.748 kb on - strand, within Echvi_0283at 295.761 kb on - strand, within Echvi_0283at 295.761 kb on - strand, within Echvi_0283at 295.772 kb on - strand, within Echvi_0283at 295.816 kb on + strandat 295.826 kb on - strandat 295.924 kb on + strandat 296.084 kb on + strandat 296.084 kb on + strandat 296.085 kb on - strandat 296.085 kb on - strandat 296.115 kb on + strandat 296.115 kb on + strandat 296.115 kb on + strandat 296.115 kb on + strandat 296.116 kb on - strandat 296.116 kb on - strandat 296.116 kb on - strandat 296.148 kb on + strandat 296.725 kb on - strandat 296.725 kb on - strandat 296.725 kb on - strandat 297.457 kb on - strand, within Echvi_0286at 297.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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295,184 + Echvi_0283 0.44 +1.2
295,185 - Echvi_0283 0.44 -0.7
295,302 - Echvi_0283 0.53 +0.2
295,302 - Echvi_0283 0.53 -0.6
295,308 + Echvi_0283 0.54 -0.4
295,309 - Echvi_0283 0.54 -0.8
295,309 - Echvi_0283 0.54 +0.1
295,309 - Echvi_0283 0.54 -0.8
295,309 - Echvi_0283 0.54 +0.6
295,508 - Echvi_0283 0.68 +0.1
295,589 + Echvi_0283 0.74 -0.1
295,641 - Echvi_0283 0.78 -1.7
295,748 - Echvi_0283 0.86 +0.7
295,761 - Echvi_0283 0.87 +1.0
295,761 - Echvi_0283 0.87 -0.6
295,772 - Echvi_0283 0.88 -0.0
295,816 + +0.8
295,826 - -0.1
295,924 + +1.7
296,084 + -1.9
296,084 + +0.3
296,085 - +0.2
296,085 - -1.2
296,115 + -0.2
296,115 + -0.5
296,115 + -0.2
296,115 + -1.1
296,116 - +0.5
296,116 - -0.7
296,116 - +1.2
296,148 + -2.2
296,725 - -1.0
296,725 - -0.8
296,725 - +0.3
297,457 - Echvi_0286 0.53 +0.6
297,635 - -0.2

Or see this region's nucleotide sequence