Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0065

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0063 and Echvi_0064 are separated by 609 nucleotidesEchvi_0064 and Echvi_0065 are separated by 95 nucleotidesEchvi_0065 and Echvi_0066 are separated by 214 nucleotides Echvi_0063: Echvi_0063 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 62,049 to 63,203 _0063 Echvi_0064: Echvi_0064 - 5S, at 63,813 to 63,924 _0064 Echvi_0065: Echvi_0065 - 23S, at 64,020 to 66,913 _0065 Echvi_0066: Echvi_0066 - 16S, at 67,128 to 68,539 _0066 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2 3at 63.030 kb on + strand, within Echvi_0063at 63.062 kb on + strand, within Echvi_0063at 63.076 kb on + strand, within Echvi_0063at 63.111 kb on + strandat 63.150 kb on + strandat 63.153 kb on + strandat 63.154 kb on - strandat 63.154 kb on - strandat 63.155 kb on + strandat 63.155 kb on + strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.156 kb on - strandat 63.189 kb on + strandat 63.189 kb on + strandat 63.195 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.198 kb on + strandat 63.199 kb on - strandat 63.220 kb on + strandat 63.227 kb on + strandat 63.466 kb on - strandat 63.517 kb on - strandat 63.517 kb on - strandat 63.579 kb on + strandat 63.580 kb on - strandat 63.737 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
63,030 + Echvi_0063 0.85 -0.4
63,062 + Echvi_0063 0.88 +0.8
63,076 + Echvi_0063 0.89 +0.5
63,111 + -0.9
63,150 + -0.1
63,153 + +0.8
63,154 - +0.8
63,154 - +0.2
63,155 + -0.0
63,155 + -0.6
63,156 - -0.3
63,156 - -0.9
63,156 - +0.2
63,156 - +1.9
63,189 + +3.0
63,189 + +0.7
63,195 + -2.0
63,198 + +0.6
63,198 + +0.7
63,198 + -0.1
63,198 + +0.4
63,198 + +2.4
63,198 + -0.4
63,199 - +0.7
63,220 + -0.2
63,227 + -2.6
63,466 - -0.6
63,517 - -1.6
63,517 - +1.1
63,579 + -1.0
63,580 - +1.9
63,737 - +0.6

Or see this region's nucleotide sequence