Experiment: m.b. Carbenicillin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1002 and B158DRAFT_1003 overlap by 8 nucleotides B158DRAFT_1003 and B158DRAFT_1004 overlap by 8 nucleotides B158DRAFT_1004 and B158DRAFT_1005 are separated by 2 nucleotides
B158DRAFT_1002: B158DRAFT_1002 - Membrane protein involved in colicin uptake, at 1,042,091 to 1,043,824
_1002
B158DRAFT_1003: B158DRAFT_1003 - Mg-chelatase subunit ChlD, at 1,043,817 to 1,044,857
_1003
B158DRAFT_1004: B158DRAFT_1004 - hypothetical protein, at 1,044,850 to 1,045,392
_1004
B158DRAFT_1005: B158DRAFT_1005 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 1,045,395 to 1,046,387
_1005
Position (kb)
1043
1044
1045 Strain fitness (log2 ratio)
-2
-1
0
1 at 1042.830 kb on + strand, within B158DRAFT_1002 at 1042.844 kb on + strand, within B158DRAFT_1002 at 1042.873 kb on + strand, within B158DRAFT_1002 at 1042.972 kb on - strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.988 kb on + strand, within B158DRAFT_1002 at 1042.993 kb on + strand, within B158DRAFT_1002 at 1042.995 kb on - strand, within B158DRAFT_1002 at 1042.995 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1042.996 kb on - strand, within B158DRAFT_1002 at 1043.001 kb on - strand, within B158DRAFT_1002 at 1043.001 kb on - strand, within B158DRAFT_1002 at 1043.069 kb on - strand, within B158DRAFT_1002 at 1043.083 kb on - strand, within B158DRAFT_1002 at 1043.120 kb on - strand, within B158DRAFT_1002 at 1043.154 kb on + strand, within B158DRAFT_1002 at 1043.154 kb on + strand, within B158DRAFT_1002 at 1043.225 kb on + strand, within B158DRAFT_1002 at 1043.228 kb on - strand, within B158DRAFT_1002 at 1043.233 kb on - strand, within B158DRAFT_1002 at 1043.241 kb on + strand, within B158DRAFT_1002 at 1043.329 kb on - strand, within B158DRAFT_1002 at 1043.343 kb on + strand, within B158DRAFT_1002 at 1043.357 kb on + strand, within B158DRAFT_1002 at 1043.357 kb on + strand, within B158DRAFT_1002 at 1043.357 kb on + strand, within B158DRAFT_1002 at 1043.357 kb on + strand, within B158DRAFT_1002 at 1043.357 kb on + strand, within B158DRAFT_1002 at 1043.357 kb on + strand, within B158DRAFT_1002 at 1043.365 kb on - strand, within B158DRAFT_1002 at 1043.365 kb on - strand, within B158DRAFT_1002 at 1043.365 kb on - strand, within B158DRAFT_1002 at 1043.365 kb on - strand, within B158DRAFT_1002 at 1043.365 kb on - strand, within B158DRAFT_1002 at 1043.365 kb on - strand, within B158DRAFT_1002 at 1043.366 kb on + strand, within B158DRAFT_1002 at 1043.387 kb on + strand, within B158DRAFT_1002 at 1043.473 kb on + strand, within B158DRAFT_1002 at 1043.515 kb on - strand, within B158DRAFT_1002 at 1043.547 kb on + strand, within B158DRAFT_1002 at 1043.560 kb on + strand, within B158DRAFT_1002 at 1043.579 kb on - strand, within B158DRAFT_1002 at 1043.629 kb on + strand, within B158DRAFT_1002 at 1043.663 kb on + strand at 1043.664 kb on + strand at 1043.671 kb on - strand at 1043.692 kb on + strand at 1043.717 kb on + strand at 1043.724 kb on + strand at 1043.746 kb on - strand at 1043.772 kb on + strand at 1043.772 kb on + strand at 1043.860 kb on - strand at 1043.981 kb on - strand, within B158DRAFT_1003 at 1043.995 kb on + strand, within B158DRAFT_1003 at 1043.995 kb on + strand, within B158DRAFT_1003 at 1043.995 kb on + strand, within B158DRAFT_1003 at 1043.995 kb on + strand, within B158DRAFT_1003 at 1044.003 kb on - strand, within B158DRAFT_1003 at 1044.035 kb on + strand, within B158DRAFT_1003 at 1044.043 kb on - strand, within B158DRAFT_1003 at 1044.218 kb on + strand, within B158DRAFT_1003 at 1044.223 kb on + strand, within B158DRAFT_1003 at 1044.223 kb on - strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.247 kb on + strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.255 kb on - strand, within B158DRAFT_1003 at 1044.323 kb on + strand, within B158DRAFT_1003 at 1044.323 kb on + strand, within B158DRAFT_1003 at 1044.323 kb on + strand, within B158DRAFT_1003 at 1044.323 kb on + strand, within B158DRAFT_1003 at 1044.323 kb on + strand, within B158DRAFT_1003 at 1044.324 kb on + strand, within B158DRAFT_1003 at 1044.324 kb on + strand, within B158DRAFT_1003 at 1044.331 kb on - strand, within B158DRAFT_1003 at 1044.331 kb on - strand, within B158DRAFT_1003 at 1044.331 kb on - strand, within B158DRAFT_1003 at 1044.331 kb on - strand, within B158DRAFT_1003 at 1044.363 kb on - strand, within B158DRAFT_1003 at 1044.363 kb on - strand, within B158DRAFT_1003 at 1044.365 kb on + strand, within B158DRAFT_1003 at 1044.365 kb on + strand, within B158DRAFT_1003 at 1044.365 kb on + strand, within B158DRAFT_1003 at 1044.365 kb on + strand, within B158DRAFT_1003 at 1044.373 kb on - strand, within B158DRAFT_1003 at 1044.373 kb on - strand, within B158DRAFT_1003 at 1044.390 kb on + strand, within B158DRAFT_1003 at 1044.390 kb on + strand, within B158DRAFT_1003 at 1044.390 kb on + strand, within B158DRAFT_1003 at 1044.398 kb on - strand, within B158DRAFT_1003 at 1044.400 kb on - strand, within B158DRAFT_1003 at 1044.431 kb on + strand, within B158DRAFT_1003 at 1044.431 kb on - strand, within B158DRAFT_1003 at 1044.453 kb on + strand, within B158DRAFT_1003 at 1044.472 kb on + strand, within B158DRAFT_1003 at 1044.472 kb on + strand, within B158DRAFT_1003 at 1044.492 kb on - strand, within B158DRAFT_1003 at 1044.522 kb on - strand, within B158DRAFT_1003 at 1044.637 kb on - strand, within B158DRAFT_1003 at 1044.641 kb on - strand, within B158DRAFT_1003 at 1044.643 kb on - strand, within B158DRAFT_1003 at 1044.643 kb on - strand, within B158DRAFT_1003 at 1044.643 kb on - strand, within B158DRAFT_1003 at 1044.693 kb on + strand, within B158DRAFT_1003 at 1044.773 kb on + strand at 1044.781 kb on - strand at 1044.788 kb on + strand at 1044.894 kb on + strand at 1044.911 kb on + strand, within B158DRAFT_1004 at 1044.919 kb on - strand, within B158DRAFT_1004 at 1044.937 kb on + strand, within B158DRAFT_1004 at 1044.937 kb on + strand, within B158DRAFT_1004 at 1044.978 kb on + strand, within B158DRAFT_1004 at 1044.978 kb on + strand, within B158DRAFT_1004 at 1044.978 kb on + strand, within B158DRAFT_1004 at 1044.978 kb on + strand, within B158DRAFT_1004 at 1044.986 kb on - strand, within B158DRAFT_1004 at 1044.986 kb on - strand, within B158DRAFT_1004 at 1044.986 kb on - strand, within B158DRAFT_1004 at 1044.986 kb on - strand, within B158DRAFT_1004 at 1044.993 kb on + strand, within B158DRAFT_1004 at 1045.000 kb on + strand, within B158DRAFT_1004 at 1045.020 kb on + strand, within B158DRAFT_1004 at 1045.037 kb on + strand, within B158DRAFT_1004 at 1045.037 kb on + strand, within B158DRAFT_1004 at 1045.037 kb on + strand, within B158DRAFT_1004 at 1045.037 kb on + strand, within B158DRAFT_1004 at 1045.037 kb on + strand, within B158DRAFT_1004 at 1045.045 kb on - strand, within B158DRAFT_1004 at 1045.068 kb on + strand, within B158DRAFT_1004 at 1045.133 kb on - strand, within B158DRAFT_1004 at 1045.173 kb on - strand, within B158DRAFT_1004 at 1045.258 kb on + strand, within B158DRAFT_1004 at 1045.349 kb on - strand at 1045.387 kb on + strand at 1045.387 kb on + strand at 1045.466 kb on + strand at 1045.489 kb on + strand at 1045.489 kb on + strand at 1045.502 kb on - strand, within B158DRAFT_1005 at 1045.568 kb on + strand, within B158DRAFT_1005 at 1045.574 kb on + strand, within B158DRAFT_1005 at 1045.584 kb on + strand, within B158DRAFT_1005 at 1045.591 kb on + strand, within B158DRAFT_1005 at 1045.591 kb on + strand, within B158DRAFT_1005 at 1045.689 kb on - strand, within B158DRAFT_1005 at 1045.689 kb on - strand, within B158DRAFT_1005 at 1045.691 kb on + strand, within B158DRAFT_1005 at 1045.694 kb on - strand, within B158DRAFT_1005 at 1045.699 kb on - strand, within B158DRAFT_1005 at 1045.791 kb on + strand, within B158DRAFT_1005 at 1045.791 kb on + strand, within B158DRAFT_1005
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.005 mg/ml remove 1,042,830 + B158DRAFT_1002 0.43 +0.2 1,042,844 + B158DRAFT_1002 0.43 -1.1 1,042,873 + B158DRAFT_1002 0.45 -0.8 1,042,972 - B158DRAFT_1002 0.51 -0.2 1,042,988 + B158DRAFT_1002 0.52 +1.0 1,042,988 + B158DRAFT_1002 0.52 -0.4 1,042,988 + B158DRAFT_1002 0.52 -0.4 1,042,988 + B158DRAFT_1002 0.52 -0.8 1,042,988 + B158DRAFT_1002 0.52 -1.5 1,042,988 + B158DRAFT_1002 0.52 -0.8 1,042,988 + B158DRAFT_1002 0.52 -0.6 1,042,988 + B158DRAFT_1002 0.52 -0.0 1,042,988 + B158DRAFT_1002 0.52 -1.0 1,042,988 + B158DRAFT_1002 0.52 +0.0 1,042,993 + B158DRAFT_1002 0.52 -0.9 1,042,995 - B158DRAFT_1002 0.52 -1.0 1,042,995 - B158DRAFT_1002 0.52 -0.5 1,042,996 - B158DRAFT_1002 0.52 +1.3 1,042,996 - B158DRAFT_1002 0.52 -1.1 1,042,996 - B158DRAFT_1002 0.52 -1.3 1,042,996 - B158DRAFT_1002 0.52 -0.8 1,042,996 - B158DRAFT_1002 0.52 -0.2 1,042,996 - B158DRAFT_1002 0.52 -1.3 1,042,996 - B158DRAFT_1002 0.52 +0.4 1,042,996 - B158DRAFT_1002 0.52 +0.5 1,042,996 - B158DRAFT_1002 0.52 +0.0 1,042,996 - B158DRAFT_1002 0.52 -1.0 1,042,996 - B158DRAFT_1002 0.52 -0.9 1,043,001 - B158DRAFT_1002 0.52 -0.7 1,043,001 - B158DRAFT_1002 0.52 -0.6 1,043,069 - B158DRAFT_1002 0.56 -0.8 1,043,083 - B158DRAFT_1002 0.57 -0.7 1,043,120 - B158DRAFT_1002 0.59 -1.5 1,043,154 + B158DRAFT_1002 0.61 -0.5 1,043,154 + B158DRAFT_1002 0.61 -0.2 1,043,225 + B158DRAFT_1002 0.65 -0.6 1,043,228 - B158DRAFT_1002 0.66 -0.4 1,043,233 - B158DRAFT_1002 0.66 -0.5 1,043,241 + B158DRAFT_1002 0.66 -1.0 1,043,329 - B158DRAFT_1002 0.71 -0.4 1,043,343 + B158DRAFT_1002 0.72 -0.8 1,043,357 + B158DRAFT_1002 0.73 -1.8 1,043,357 + B158DRAFT_1002 0.73 -0.9 1,043,357 + B158DRAFT_1002 0.73 -0.9 1,043,357 + B158DRAFT_1002 0.73 -0.6 1,043,357 + B158DRAFT_1002 0.73 -0.4 1,043,357 + B158DRAFT_1002 0.73 -0.3 1,043,365 - B158DRAFT_1002 0.73 -0.1 1,043,365 - B158DRAFT_1002 0.73 -1.0 1,043,365 - B158DRAFT_1002 0.73 -0.1 1,043,365 - B158DRAFT_1002 0.73 -0.1 1,043,365 - B158DRAFT_1002 0.73 -1.1 1,043,365 - B158DRAFT_1002 0.73 -1.5 1,043,366 + B158DRAFT_1002 0.74 +0.5 1,043,387 + B158DRAFT_1002 0.75 -0.9 1,043,473 + B158DRAFT_1002 0.80 -1.1 1,043,515 - B158DRAFT_1002 0.82 -0.9 1,043,547 + B158DRAFT_1002 0.84 -0.4 1,043,560 + B158DRAFT_1002 0.85 -0.3 1,043,579 - B158DRAFT_1002 0.86 -1.1 1,043,629 + B158DRAFT_1002 0.89 +1.2 1,043,663 + -0.9 1,043,664 + -0.5 1,043,671 - -1.5 1,043,692 + -0.3 1,043,717 + -0.7 1,043,724 + -0.4 1,043,746 - -0.2 1,043,772 + +0.1 1,043,772 + -1.0 1,043,860 - -0.9 1,043,981 - B158DRAFT_1003 0.16 -0.1 1,043,995 + B158DRAFT_1003 0.17 -0.8 1,043,995 + B158DRAFT_1003 0.17 -0.3 1,043,995 + B158DRAFT_1003 0.17 -0.6 1,043,995 + B158DRAFT_1003 0.17 -0.7 1,044,003 - B158DRAFT_1003 0.18 -0.5 1,044,035 + B158DRAFT_1003 0.21 -0.4 1,044,043 - B158DRAFT_1003 0.22 +0.8 1,044,218 + B158DRAFT_1003 0.39 +0.6 1,044,223 + B158DRAFT_1003 0.39 -1.9 1,044,223 - B158DRAFT_1003 0.39 -0.3 1,044,247 + B158DRAFT_1003 0.41 -0.1 1,044,247 + B158DRAFT_1003 0.41 +0.3 1,044,247 + B158DRAFT_1003 0.41 -0.5 1,044,247 + B158DRAFT_1003 0.41 -1.1 1,044,247 + B158DRAFT_1003 0.41 -0.8 1,044,247 + B158DRAFT_1003 0.41 -0.6 1,044,247 + B158DRAFT_1003 0.41 -0.8 1,044,247 + B158DRAFT_1003 0.41 -1.0 1,044,247 + B158DRAFT_1003 0.41 -1.2 1,044,255 - B158DRAFT_1003 0.42 +0.1 1,044,255 - B158DRAFT_1003 0.42 -0.9 1,044,255 - B158DRAFT_1003 0.42 -0.0 1,044,255 - B158DRAFT_1003 0.42 -0.5 1,044,255 - B158DRAFT_1003 0.42 +0.2 1,044,255 - B158DRAFT_1003 0.42 -0.6 1,044,255 - B158DRAFT_1003 0.42 -0.7 1,044,255 - B158DRAFT_1003 0.42 -0.4 1,044,323 + B158DRAFT_1003 0.49 -0.1 1,044,323 + B158DRAFT_1003 0.49 +0.0 1,044,323 + B158DRAFT_1003 0.49 -1.1 1,044,323 + B158DRAFT_1003 0.49 -0.7 1,044,323 + B158DRAFT_1003 0.49 -0.1 1,044,324 + B158DRAFT_1003 0.49 -0.3 1,044,324 + B158DRAFT_1003 0.49 -1.2 1,044,331 - B158DRAFT_1003 0.49 -0.7 1,044,331 - B158DRAFT_1003 0.49 -0.6 1,044,331 - B158DRAFT_1003 0.49 -0.7 1,044,331 - B158DRAFT_1003 0.49 -1.2 1,044,363 - B158DRAFT_1003 0.52 -0.2 1,044,363 - B158DRAFT_1003 0.52 -0.7 1,044,365 + B158DRAFT_1003 0.53 -0.4 1,044,365 + B158DRAFT_1003 0.53 -1.0 1,044,365 + B158DRAFT_1003 0.53 -1.5 1,044,365 + B158DRAFT_1003 0.53 -0.4 1,044,373 - B158DRAFT_1003 0.53 -0.3 1,044,373 - B158DRAFT_1003 0.53 -0.7 1,044,390 + B158DRAFT_1003 0.55 -0.8 1,044,390 + B158DRAFT_1003 0.55 -0.7 1,044,390 + B158DRAFT_1003 0.55 -0.8 1,044,398 - B158DRAFT_1003 0.56 -0.5 1,044,400 - B158DRAFT_1003 0.56 -0.1 1,044,431 + B158DRAFT_1003 0.59 -0.3 1,044,431 - B158DRAFT_1003 0.59 -1.0 1,044,453 + B158DRAFT_1003 0.61 -0.7 1,044,472 + B158DRAFT_1003 0.63 -1.6 1,044,472 + B158DRAFT_1003 0.63 -0.7 1,044,492 - B158DRAFT_1003 0.65 -0.5 1,044,522 - B158DRAFT_1003 0.68 -0.7 1,044,637 - B158DRAFT_1003 0.79 -1.0 1,044,641 - B158DRAFT_1003 0.79 -1.2 1,044,643 - B158DRAFT_1003 0.79 -0.4 1,044,643 - B158DRAFT_1003 0.79 -1.0 1,044,643 - B158DRAFT_1003 0.79 -0.3 1,044,693 + B158DRAFT_1003 0.84 -1.1 1,044,773 + -2.3 1,044,781 - -0.7 1,044,788 + -0.6 1,044,894 + -0.7 1,044,911 + B158DRAFT_1004 0.11 -1.3 1,044,919 - B158DRAFT_1004 0.13 -1.0 1,044,937 + B158DRAFT_1004 0.16 -0.7 1,044,937 + B158DRAFT_1004 0.16 -0.7 1,044,978 + B158DRAFT_1004 0.24 +0.1 1,044,978 + B158DRAFT_1004 0.24 -0.8 1,044,978 + B158DRAFT_1004 0.24 -1.1 1,044,978 + B158DRAFT_1004 0.24 -0.6 1,044,986 - B158DRAFT_1004 0.25 -0.3 1,044,986 - B158DRAFT_1004 0.25 -0.3 1,044,986 - B158DRAFT_1004 0.25 -0.7 1,044,986 - B158DRAFT_1004 0.25 -0.4 1,044,993 + B158DRAFT_1004 0.26 +0.0 1,045,000 + B158DRAFT_1004 0.28 -0.2 1,045,020 + B158DRAFT_1004 0.31 -1.0 1,045,037 + B158DRAFT_1004 0.34 -0.7 1,045,037 + B158DRAFT_1004 0.34 -0.9 1,045,037 + B158DRAFT_1004 0.34 -1.2 1,045,037 + B158DRAFT_1004 0.34 -0.1 1,045,037 + B158DRAFT_1004 0.34 -1.1 1,045,045 - B158DRAFT_1004 0.36 -0.7 1,045,068 + B158DRAFT_1004 0.40 -0.8 1,045,133 - B158DRAFT_1004 0.52 -0.8 1,045,173 - B158DRAFT_1004 0.59 -0.2 1,045,258 + B158DRAFT_1004 0.75 -0.9 1,045,349 - -0.3 1,045,387 + -1.9 1,045,387 + -1.1 1,045,466 + -0.4 1,045,489 + -0.5 1,045,489 + +0.4 1,045,502 - B158DRAFT_1005 0.11 -0.2 1,045,568 + B158DRAFT_1005 0.17 -1.0 1,045,574 + B158DRAFT_1005 0.18 -0.7 1,045,584 + B158DRAFT_1005 0.19 -0.9 1,045,591 + B158DRAFT_1005 0.20 -0.9 1,045,591 + B158DRAFT_1005 0.20 -0.3 1,045,689 - B158DRAFT_1005 0.30 -1.2 1,045,689 - B158DRAFT_1005 0.30 +0.0 1,045,691 + B158DRAFT_1005 0.30 -0.7 1,045,694 - B158DRAFT_1005 0.30 -0.9 1,045,699 - B158DRAFT_1005 0.31 -0.4 1,045,791 + B158DRAFT_1005 0.40 -1.0 1,045,791 + B158DRAFT_1005 0.40 -0.5
Or see this region's nucleotide sequence