Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0862

Experiment: m.b. Carbenicillin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0860 and B158DRAFT_0861 are separated by 85 nucleotidesB158DRAFT_0861 and B158DRAFT_0862 are separated by 156 nucleotidesB158DRAFT_0862 and B158DRAFT_0863 are separated by 113 nucleotidesB158DRAFT_0863 and B158DRAFT_0864 are separated by 107 nucleotides B158DRAFT_0860: B158DRAFT_0860 - Sensors of blue-light using FAD., at 879,620 to 880,051 _0860 B158DRAFT_0861: B158DRAFT_0861 - Cytochrome b, at 880,137 to 880,691 _0861 B158DRAFT_0862: B158DRAFT_0862 - Zinc-binding domain of primase-helicase., at 880,848 to 881,009 _0862 B158DRAFT_0863: B158DRAFT_0863 - Predicted amidophosphoribosyltransferases, at 881,123 to 881,830 _0863 B158DRAFT_0864: B158DRAFT_0864 - biotin synthase (EC 2.8.1.6), at 881,938 to 883,032 _0864 Position (kb) 880 881 882Strain fitness (log2 ratio) -2 -1 0 1 2at 879.926 kb on - strand, within B158DRAFT_0860at 879.936 kb on - strand, within B158DRAFT_0860at 879.936 kb on - strand, within B158DRAFT_0860at 879.958 kb on + strand, within B158DRAFT_0860at 879.966 kb on - strand, within B158DRAFT_0860at 879.966 kb on - strand, within B158DRAFT_0860at 879.997 kb on + strand, within B158DRAFT_0860at 880.009 kb on + strandat 880.012 kb on - strandat 880.047 kb on + strandat 880.080 kb on - strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.102 kb on + strandat 880.109 kb on - strandat 880.110 kb on - strandat 880.110 kb on - strandat 880.112 kb on + strandat 880.112 kb on + strandat 880.112 kb on + strandat 880.120 kb on - strandat 880.150 kb on + strandat 880.158 kb on - strandat 880.188 kb on + strandat 880.188 kb on - strandat 880.188 kb on - strandat 880.238 kb on + strand, within B158DRAFT_0861at 880.250 kb on + strand, within B158DRAFT_0861at 880.270 kb on + strand, within B158DRAFT_0861at 880.270 kb on + strand, within B158DRAFT_0861at 880.270 kb on + strand, within B158DRAFT_0861at 880.275 kb on + strand, within B158DRAFT_0861at 880.278 kb on - strand, within B158DRAFT_0861at 880.286 kb on + strand, within B158DRAFT_0861at 880.288 kb on - strand, within B158DRAFT_0861at 880.291 kb on + strand, within B158DRAFT_0861at 880.291 kb on + strand, within B158DRAFT_0861at 880.291 kb on + strand, within B158DRAFT_0861at 880.294 kb on - strand, within B158DRAFT_0861at 880.294 kb on - strand, within B158DRAFT_0861at 880.304 kb on - strand, within B158DRAFT_0861at 880.304 kb on - strand, within B158DRAFT_0861at 880.304 kb on - strand, within B158DRAFT_0861at 880.354 kb on + strand, within B158DRAFT_0861at 880.354 kb on + strand, within B158DRAFT_0861at 880.362 kb on - strand, within B158DRAFT_0861at 880.364 kb on + strand, within B158DRAFT_0861at 880.364 kb on + strand, within B158DRAFT_0861at 880.364 kb on + strand, within B158DRAFT_0861at 880.380 kb on + strand, within B158DRAFT_0861at 880.470 kb on + strand, within B158DRAFT_0861at 880.513 kb on + strand, within B158DRAFT_0861at 880.521 kb on - strand, within B158DRAFT_0861at 880.521 kb on - strand, within B158DRAFT_0861at 880.521 kb on - strand, within B158DRAFT_0861at 880.529 kb on + strand, within B158DRAFT_0861at 880.532 kb on - strand, within B158DRAFT_0861at 880.568 kb on + strand, within B158DRAFT_0861at 880.582 kb on + strand, within B158DRAFT_0861at 880.624 kb on - strand, within B158DRAFT_0861at 880.637 kb on + strandat 880.645 kb on - strandat 880.645 kb on - strandat 880.670 kb on + strandat 880.670 kb on + strandat 880.684 kb on + strandat 880.693 kb on + strandat 880.750 kb on + strandat 880.795 kb on - strandat 880.817 kb on - strandat 880.870 kb on + strand, within B158DRAFT_0862at 880.934 kb on - strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.981 kb on + strand, within B158DRAFT_0862at 880.989 kb on - strand, within B158DRAFT_0862at 880.989 kb on - strand, within B158DRAFT_0862at 880.989 kb on - strand, within B158DRAFT_0862at 881.007 kb on + strandat 881.007 kb on + strandat 881.007 kb on + strandat 881.007 kb on + strandat 881.015 kb on - strandat 881.015 kb on - strandat 881.015 kb on - strandat 881.015 kb on - strandat 881.083 kb on + strandat 881.121 kb on + strandat 881.121 kb on + strandat 881.121 kb on + strandat 881.121 kb on + strandat 881.121 kb on + strandat 881.121 kb on + strandat 881.122 kb on - strandat 881.126 kb on + strandat 881.126 kb on + strandat 881.127 kb on + strandat 881.129 kb on - strandat 881.129 kb on - strandat 881.129 kb on - strandat 881.134 kb on - strandat 881.134 kb on - strandat 881.134 kb on - strandat 881.149 kb on - strandat 881.154 kb on - strandat 881.167 kb on + strandat 881.167 kb on + strandat 881.167 kb on + strandat 881.167 kb on + strandat 881.179 kb on + strandat 881.187 kb on - strandat 881.187 kb on - strandat 881.218 kb on - strand, within B158DRAFT_0863at 881.220 kb on + strand, within B158DRAFT_0863at 881.271 kb on + strand, within B158DRAFT_0863at 881.288 kb on + strand, within B158DRAFT_0863at 881.290 kb on + strand, within B158DRAFT_0863at 881.290 kb on + strand, within B158DRAFT_0863at 881.296 kb on - strand, within B158DRAFT_0863at 881.296 kb on - strand, within B158DRAFT_0863at 881.339 kb on - strand, within B158DRAFT_0863at 881.339 kb on - strand, within B158DRAFT_0863at 881.339 kb on - strand, within B158DRAFT_0863at 881.375 kb on + strand, within B158DRAFT_0863at 881.375 kb on + strand, within B158DRAFT_0863at 881.383 kb on - strand, within B158DRAFT_0863at 881.383 kb on - strand, within B158DRAFT_0863at 881.404 kb on + strand, within B158DRAFT_0863at 881.404 kb on + strand, within B158DRAFT_0863at 881.404 kb on + strand, within B158DRAFT_0863at 881.404 kb on + strand, within B158DRAFT_0863at 881.412 kb on - strand, within B158DRAFT_0863at 881.412 kb on - strand, within B158DRAFT_0863at 881.412 kb on - strand, within B158DRAFT_0863at 881.412 kb on - strand, within B158DRAFT_0863at 881.412 kb on - strand, within B158DRAFT_0863at 881.412 kb on - strand, within B158DRAFT_0863at 881.412 kb on - strand, within B158DRAFT_0863at 881.419 kb on + strand, within B158DRAFT_0863at 881.419 kb on + strand, within B158DRAFT_0863at 881.419 kb on + strand, within B158DRAFT_0863at 881.427 kb on - strand, within B158DRAFT_0863at 881.427 kb on - strand, within B158DRAFT_0863at 881.600 kb on + strand, within B158DRAFT_0863at 881.634 kb on - strand, within B158DRAFT_0863at 881.657 kb on - strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.693 kb on + strand, within B158DRAFT_0863at 881.698 kb on + strand, within B158DRAFT_0863at 881.701 kb on - strand, within B158DRAFT_0863at 881.701 kb on - strand, within B158DRAFT_0863at 881.701 kb on - strand, within B158DRAFT_0863at 881.701 kb on - strand, within B158DRAFT_0863at 881.701 kb on - strand, within B158DRAFT_0863at 881.701 kb on - strand, within B158DRAFT_0863at 881.701 kb on - strand, within B158DRAFT_0863at 881.713 kb on - strand, within B158DRAFT_0863at 881.715 kb on + strand, within B158DRAFT_0863at 881.783 kb on + strandat 881.790 kb on + strandat 881.918 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.005 mg/ml
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879,926 - B158DRAFT_0860 0.71 -0.4
879,936 - B158DRAFT_0860 0.73 -0.2
879,936 - B158DRAFT_0860 0.73 -0.1
879,958 + B158DRAFT_0860 0.78 -0.7
879,966 - B158DRAFT_0860 0.80 -0.1
879,966 - B158DRAFT_0860 0.80 -0.4
879,997 + B158DRAFT_0860 0.87 -0.8
880,009 + -1.9
880,012 - -0.3
880,047 + -0.1
880,080 - -0.4
880,102 + -0.5
880,102 + +0.1
880,102 + +0.1
880,102 + +0.3
880,102 + +0.3
880,109 - -0.4
880,110 - -0.5
880,110 - -0.3
880,112 + -0.4
880,112 + -0.2
880,112 + -0.5
880,120 - -0.6
880,150 + -0.8
880,158 - +0.4
880,188 + -0.1
880,188 - -0.5
880,188 - -0.4
880,238 + B158DRAFT_0861 0.18 -0.0
880,250 + B158DRAFT_0861 0.20 +0.3
880,270 + B158DRAFT_0861 0.24 +0.1
880,270 + B158DRAFT_0861 0.24 -0.4
880,270 + B158DRAFT_0861 0.24 -0.3
880,275 + B158DRAFT_0861 0.25 -0.1
880,278 - B158DRAFT_0861 0.25 -0.4
880,286 + B158DRAFT_0861 0.27 -0.2
880,288 - B158DRAFT_0861 0.27 -0.9
880,291 + B158DRAFT_0861 0.28 -0.6
880,291 + B158DRAFT_0861 0.28 -0.2
880,291 + B158DRAFT_0861 0.28 -1.1
880,294 - B158DRAFT_0861 0.28 +0.4
880,294 - B158DRAFT_0861 0.28 -0.2
880,304 - B158DRAFT_0861 0.30 -1.0
880,304 - B158DRAFT_0861 0.30 -0.0
880,304 - B158DRAFT_0861 0.30 -0.3
880,354 + B158DRAFT_0861 0.39 +0.2
880,354 + B158DRAFT_0861 0.39 +0.7
880,362 - B158DRAFT_0861 0.41 -0.1
880,364 + B158DRAFT_0861 0.41 -0.4
880,364 + B158DRAFT_0861 0.41 -0.3
880,364 + B158DRAFT_0861 0.41 +0.1
880,380 + B158DRAFT_0861 0.44 -0.3
880,470 + B158DRAFT_0861 0.60 -0.9
880,513 + B158DRAFT_0861 0.68 +1.0
880,521 - B158DRAFT_0861 0.69 -0.4
880,521 - B158DRAFT_0861 0.69 -0.6
880,521 - B158DRAFT_0861 0.69 -0.1
880,529 + B158DRAFT_0861 0.71 +0.4
880,532 - B158DRAFT_0861 0.71 -0.2
880,568 + B158DRAFT_0861 0.78 +0.5
880,582 + B158DRAFT_0861 0.80 -0.3
880,624 - B158DRAFT_0861 0.88 -0.2
880,637 + +0.0
880,645 - +0.2
880,645 - -0.2
880,670 + -0.3
880,670 + -0.0
880,684 + +0.1
880,693 + -0.0
880,750 + -0.2
880,795 - +0.1
880,817 - +0.3
880,870 + B158DRAFT_0862 0.14 +0.2
880,934 - B158DRAFT_0862 0.53 +0.0
880,981 + B158DRAFT_0862 0.82 -0.9
880,981 + B158DRAFT_0862 0.82 -0.5
880,981 + B158DRAFT_0862 0.82 -0.2
880,981 + B158DRAFT_0862 0.82 -0.7
880,981 + B158DRAFT_0862 0.82 -0.7
880,989 - B158DRAFT_0862 0.87 -0.1
880,989 - B158DRAFT_0862 0.87 -0.5
880,989 - B158DRAFT_0862 0.87 -0.5
881,007 + -0.3
881,007 + -0.0
881,007 + -0.3
881,007 + -0.5
881,015 - -0.5
881,015 - +0.4
881,015 - -0.4
881,015 - +0.4
881,083 + +0.1
881,121 + -0.4
881,121 + -0.7
881,121 + -0.5
881,121 + -0.8
881,121 + -0.2
881,121 + -0.6
881,122 - +2.4
881,126 + +0.3
881,126 + +0.0
881,127 + -0.2
881,129 - -0.2
881,129 - +0.1
881,129 - -0.1
881,134 - -0.6
881,134 - -0.2
881,134 - -0.7
881,149 - +0.1
881,154 - -0.1
881,167 + +0.0
881,167 + +1.2
881,167 + +1.5
881,167 + +0.1
881,179 + -1.0
881,187 - -0.3
881,187 - +0.1
881,218 - B158DRAFT_0863 0.13 -0.3
881,220 + B158DRAFT_0863 0.14 -0.6
881,271 + B158DRAFT_0863 0.21 -0.3
881,288 + B158DRAFT_0863 0.23 -0.3
881,290 + B158DRAFT_0863 0.24 +0.1
881,290 + B158DRAFT_0863 0.24 -0.1
881,296 - B158DRAFT_0863 0.24 -0.1
881,296 - B158DRAFT_0863 0.24 +0.1
881,339 - B158DRAFT_0863 0.31 +0.1
881,339 - B158DRAFT_0863 0.31 -0.2
881,339 - B158DRAFT_0863 0.31 +0.2
881,375 + B158DRAFT_0863 0.36 -0.0
881,375 + B158DRAFT_0863 0.36 -0.0
881,383 - B158DRAFT_0863 0.37 +0.5
881,383 - B158DRAFT_0863 0.37 +0.1
881,404 + B158DRAFT_0863 0.40 +0.2
881,404 + B158DRAFT_0863 0.40 -1.2
881,404 + B158DRAFT_0863 0.40 +0.2
881,404 + B158DRAFT_0863 0.40 -0.1
881,412 - B158DRAFT_0863 0.41 -0.5
881,412 - B158DRAFT_0863 0.41 +0.0
881,412 - B158DRAFT_0863 0.41 +1.1
881,412 - B158DRAFT_0863 0.41 +0.0
881,412 - B158DRAFT_0863 0.41 -0.3
881,412 - B158DRAFT_0863 0.41 +0.1
881,412 - B158DRAFT_0863 0.41 -0.4
881,419 + B158DRAFT_0863 0.42 -0.6
881,419 + B158DRAFT_0863 0.42 -0.3
881,419 + B158DRAFT_0863 0.42 -0.5
881,427 - B158DRAFT_0863 0.43 +0.5
881,427 - B158DRAFT_0863 0.43 -0.2
881,600 + B158DRAFT_0863 0.67 +0.1
881,634 - B158DRAFT_0863 0.72 +0.3
881,657 - B158DRAFT_0863 0.75 -0.3
881,693 + B158DRAFT_0863 0.81 +0.2
881,693 + B158DRAFT_0863 0.81 -0.7
881,693 + B158DRAFT_0863 0.81 -0.9
881,693 + B158DRAFT_0863 0.81 +0.9
881,693 + B158DRAFT_0863 0.81 -0.0
881,693 + B158DRAFT_0863 0.81 -0.1
881,693 + B158DRAFT_0863 0.81 +0.2
881,693 + B158DRAFT_0863 0.81 -0.9
881,698 + B158DRAFT_0863 0.81 -0.2
881,701 - B158DRAFT_0863 0.82 +0.6
881,701 - B158DRAFT_0863 0.82 +0.2
881,701 - B158DRAFT_0863 0.82 +0.0
881,701 - B158DRAFT_0863 0.82 -0.3
881,701 - B158DRAFT_0863 0.82 -0.4
881,701 - B158DRAFT_0863 0.82 -0.3
881,701 - B158DRAFT_0863 0.82 +0.1
881,713 - B158DRAFT_0863 0.83 -0.6
881,715 + B158DRAFT_0863 0.84 -0.0
881,783 + -0.3
881,790 + +0.6
881,918 + -0.9

Or see this region's nucleotide sequence