Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0040

Experiment: m.b. Carbenicillin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0038 and B158DRAFT_0039 are separated by 61 nucleotidesB158DRAFT_0039 and B158DRAFT_0040 are separated by 29 nucleotidesB158DRAFT_0040 and B158DRAFT_0041 overlap by 35 nucleotidesB158DRAFT_0041 and B158DRAFT_0042 are separated by 40 nucleotidesB158DRAFT_0042 and B158DRAFT_0043 are separated by 3 nucleotides B158DRAFT_0038: B158DRAFT_0038 - penicillin-binding protein 1B, at 36,913 to 39,234 _0038 B158DRAFT_0039: B158DRAFT_0039 - 2'-5' RNA ligase, at 39,296 to 39,877 _0039 B158DRAFT_0040: B158DRAFT_0040 - diguanylate cyclase (GGDEF) domain, at 39,907 to 41,715 _0040 B158DRAFT_0041: B158DRAFT_0041 - hypothetical protein, at 41,681 to 41,929 _0041 B158DRAFT_0042: B158DRAFT_0042 - Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain, at 41,970 to 42,707 _0042 B158DRAFT_0043: B158DRAFT_0043 - hypothetical protein, at 42,711 to 43,235 _0043 Position (kb) 39 40 41 42Strain fitness (log2 ratio) -1 0 1at 38.957 kb on - strand, within B158DRAFT_0038at 38.969 kb on - strand, within B158DRAFT_0038at 39.063 kb on + strandat 39.063 kb on + strandat 39.120 kb on - strandat 39.332 kb on + strandat 39.353 kb on - strandat 39.443 kb on + strand, within B158DRAFT_0039at 39.500 kb on + strand, within B158DRAFT_0039at 39.500 kb on + strand, within B158DRAFT_0039at 39.521 kb on - strand, within B158DRAFT_0039at 39.697 kb on + strand, within B158DRAFT_0039at 39.697 kb on + strand, within B158DRAFT_0039at 39.697 kb on + strand, within B158DRAFT_0039at 39.705 kb on - strand, within B158DRAFT_0039at 39.705 kb on - strand, within B158DRAFT_0039at 39.705 kb on - strand, within B158DRAFT_0039at 39.705 kb on - strand, within B158DRAFT_0039at 39.705 kb on - strand, within B158DRAFT_0039at 39.705 kb on - strand, within B158DRAFT_0039at 39.763 kb on - strand, within B158DRAFT_0039at 39.891 kb on + strandat 39.936 kb on - strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.985 kb on + strandat 39.993 kb on - strandat 39.993 kb on - strandat 39.993 kb on - strandat 39.993 kb on - strandat 39.993 kb on - strandat 40.053 kb on + strandat 40.053 kb on + strandat 40.053 kb on + strandat 40.053 kb on + strandat 40.061 kb on - strandat 40.061 kb on - strandat 40.239 kb on + strand, within B158DRAFT_0040at 40.239 kb on + strand, within B158DRAFT_0040at 40.247 kb on - strand, within B158DRAFT_0040at 40.358 kb on - strand, within B158DRAFT_0040at 40.424 kb on - strand, within B158DRAFT_0040at 40.511 kb on + strand, within B158DRAFT_0040at 40.555 kb on - strand, within B158DRAFT_0040at 40.565 kb on - strand, within B158DRAFT_0040at 40.723 kb on + strand, within B158DRAFT_0040at 40.855 kb on - strand, within B158DRAFT_0040at 40.857 kb on + strand, within B158DRAFT_0040at 40.857 kb on + strand, within B158DRAFT_0040at 40.889 kb on + strand, within B158DRAFT_0040at 40.889 kb on + strand, within B158DRAFT_0040at 40.995 kb on + strand, within B158DRAFT_0040at 41.113 kb on + strand, within B158DRAFT_0040at 41.283 kb on + strand, within B158DRAFT_0040at 41.327 kb on + strand, within B158DRAFT_0040at 41.370 kb on - strand, within B158DRAFT_0040at 41.397 kb on - strand, within B158DRAFT_0040at 41.397 kb on - strand, within B158DRAFT_0040at 41.420 kb on - strand, within B158DRAFT_0040at 41.558 kb on - strandat 41.681 kb on - strandat 41.716 kb on + strand, within B158DRAFT_0041at 41.724 kb on - strand, within B158DRAFT_0041at 41.734 kb on - strand, within B158DRAFT_0041at 41.748 kb on + strand, within B158DRAFT_0041at 41.843 kb on + strand, within B158DRAFT_0041at 41.851 kb on - strand, within B158DRAFT_0041at 41.851 kb on - strand, within B158DRAFT_0041at 41.878 kb on + strand, within B158DRAFT_0041at 41.886 kb on - strand, within B158DRAFT_0041at 41.886 kb on - strand, within B158DRAFT_0041at 41.891 kb on - strand, within B158DRAFT_0041at 41.946 kb on - strandat 42.223 kb on - strand, within B158DRAFT_0042at 42.253 kb on + strand, within B158DRAFT_0042at 42.283 kb on + strand, within B158DRAFT_0042at 42.511 kb on + strand, within B158DRAFT_0042at 42.519 kb on - strand, within B158DRAFT_0042at 42.521 kb on + strand, within B158DRAFT_0042at 42.529 kb on - strand, within B158DRAFT_0042at 42.529 kb on - strand, within B158DRAFT_0042at 42.561 kb on - strand, within B158DRAFT_0042at 42.563 kb on + strand, within B158DRAFT_0042at 42.571 kb on - strand, within B158DRAFT_0042at 42.571 kb on - strand, within B158DRAFT_0042at 42.586 kb on - strand, within B158DRAFT_0042at 42.656 kb on - strandat 42.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.005 mg/ml
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38,957 - B158DRAFT_0038 0.88 -1.3
38,969 - B158DRAFT_0038 0.89 -0.0
39,063 + -0.4
39,063 + -0.7
39,120 - -0.2
39,332 + -0.2
39,353 - -0.2
39,443 + B158DRAFT_0039 0.25 -0.2
39,500 + B158DRAFT_0039 0.35 -0.3
39,500 + B158DRAFT_0039 0.35 +0.1
39,521 - B158DRAFT_0039 0.39 -0.0
39,697 + B158DRAFT_0039 0.69 -0.0
39,697 + B158DRAFT_0039 0.69 -0.2
39,697 + B158DRAFT_0039 0.69 -0.1
39,705 - B158DRAFT_0039 0.70 +0.2
39,705 - B158DRAFT_0039 0.70 +0.3
39,705 - B158DRAFT_0039 0.70 +0.8
39,705 - B158DRAFT_0039 0.70 -0.6
39,705 - B158DRAFT_0039 0.70 -0.2
39,705 - B158DRAFT_0039 0.70 -1.2
39,763 - B158DRAFT_0039 0.80 -0.1
39,891 + -0.2
39,936 - +0.0
39,985 + -0.1
39,985 + -0.3
39,985 + -0.1
39,985 + +0.0
39,985 + -0.4
39,985 + -0.3
39,985 + +0.0
39,985 + -0.6
39,985 + -0.1
39,985 + -0.2
39,985 + +0.2
39,993 - -0.1
39,993 - -0.0
39,993 - -0.2
39,993 - -0.4
39,993 - +0.2
40,053 + +0.0
40,053 + -0.0
40,053 + -0.2
40,053 + +0.1
40,061 - -0.1
40,061 - +0.0
40,239 + B158DRAFT_0040 0.18 -0.5
40,239 + B158DRAFT_0040 0.18 -0.0
40,247 - B158DRAFT_0040 0.19 +0.5
40,358 - B158DRAFT_0040 0.25 -0.2
40,424 - B158DRAFT_0040 0.29 -0.0
40,511 + B158DRAFT_0040 0.33 +0.0
40,555 - B158DRAFT_0040 0.36 +0.2
40,565 - B158DRAFT_0040 0.36 -0.3
40,723 + B158DRAFT_0040 0.45 -0.2
40,855 - B158DRAFT_0040 0.52 +0.0
40,857 + B158DRAFT_0040 0.53 -0.0
40,857 + B158DRAFT_0040 0.53 -0.1
40,889 + B158DRAFT_0040 0.54 -0.3
40,889 + B158DRAFT_0040 0.54 -0.7
40,995 + B158DRAFT_0040 0.60 +0.3
41,113 + B158DRAFT_0040 0.67 -0.2
41,283 + B158DRAFT_0040 0.76 +0.0
41,327 + B158DRAFT_0040 0.78 -0.2
41,370 - B158DRAFT_0040 0.81 +0.1
41,397 - B158DRAFT_0040 0.82 +1.4
41,397 - B158DRAFT_0040 0.82 -0.2
41,420 - B158DRAFT_0040 0.84 -0.2
41,558 - -0.1
41,681 - -0.2
41,716 + B158DRAFT_0041 0.14 -0.0
41,724 - B158DRAFT_0041 0.17 -0.1
41,734 - B158DRAFT_0041 0.21 -0.1
41,748 + B158DRAFT_0041 0.27 +1.2
41,843 + B158DRAFT_0041 0.65 +0.2
41,851 - B158DRAFT_0041 0.68 -0.4
41,851 - B158DRAFT_0041 0.68 -0.5
41,878 + B158DRAFT_0041 0.79 +0.6
41,886 - B158DRAFT_0041 0.82 -0.6
41,886 - B158DRAFT_0041 0.82 -0.2
41,891 - B158DRAFT_0041 0.84 -0.1
41,946 - -0.3
42,223 - B158DRAFT_0042 0.34 +0.6
42,253 + B158DRAFT_0042 0.38 -0.2
42,283 + B158DRAFT_0042 0.42 +0.3
42,511 + B158DRAFT_0042 0.73 -0.0
42,519 - B158DRAFT_0042 0.74 -0.6
42,521 + B158DRAFT_0042 0.75 +0.1
42,529 - B158DRAFT_0042 0.76 +0.7
42,529 - B158DRAFT_0042 0.76 +0.0
42,561 - B158DRAFT_0042 0.80 -0.3
42,563 + B158DRAFT_0042 0.80 +0.3
42,571 - B158DRAFT_0042 0.81 +0.1
42,571 - B158DRAFT_0042 0.81 -0.3
42,586 - B158DRAFT_0042 0.83 +0.2
42,656 - -0.3
42,656 - -0.2

Or see this region's nucleotide sequence