Strain Fitness in Agrobacterium fabrum C58 around Atu5045

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5044 and Atu5045 overlap by 20 nucleotidesAtu5045 and Atu5046 are separated by 356 nucleotidesAtu5046 and Atu5047 are separated by 0 nucleotides Atu5044: Atu5044 - hypothetical protein, at 44,352 to 45,479 Atu5044 Atu5045: Atu5045 - hypothetical protein, at 45,460 to 46,200 Atu5045 Atu5046: Atu5046 - hypothetical protein, at 46,557 to 46,904 Atu5046 Atu5047: Atu5047 - hypothetical protein, at 46,905 to 47,141 Atu5047 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 44.588 kb on + strand, within Atu5044at 44.611 kb on + strand, within Atu5044at 44.623 kb on - strand, within Atu5044at 44.624 kb on - strand, within Atu5044at 44.656 kb on + strand, within Atu5044at 44.702 kb on + strand, within Atu5044at 44.711 kb on - strand, within Atu5044at 44.722 kb on + strand, within Atu5044at 44.722 kb on + strand, within Atu5044at 44.730 kb on - strand, within Atu5044at 44.754 kb on + strand, within Atu5044at 44.811 kb on - strand, within Atu5044at 44.815 kb on + strand, within Atu5044at 44.820 kb on + strand, within Atu5044at 44.842 kb on - strand, within Atu5044at 44.872 kb on - strand, within Atu5044at 44.925 kb on - strand, within Atu5044at 44.943 kb on - strand, within Atu5044at 44.976 kb on + strand, within Atu5044at 45.031 kb on - strand, within Atu5044at 45.069 kb on + strand, within Atu5044at 45.072 kb on - strand, within Atu5044at 45.097 kb on + strand, within Atu5044at 45.097 kb on + strand, within Atu5044at 45.105 kb on - strand, within Atu5044at 45.105 kb on - strand, within Atu5044at 45.105 kb on - strand, within Atu5044at 45.114 kb on + strand, within Atu5044at 45.131 kb on - strand, within Atu5044at 45.138 kb on - strand, within Atu5044at 45.142 kb on + strand, within Atu5044at 45.220 kb on + strand, within Atu5044at 45.220 kb on + strand, within Atu5044at 45.228 kb on - strand, within Atu5044at 45.228 kb on - strand, within Atu5044at 45.228 kb on - strand, within Atu5044at 45.256 kb on + strand, within Atu5044at 45.274 kb on - strand, within Atu5044at 45.279 kb on + strand, within Atu5044at 45.284 kb on + strand, within Atu5044at 45.292 kb on - strand, within Atu5044at 45.303 kb on + strand, within Atu5044at 45.303 kb on - strand, within Atu5044at 45.322 kb on + strand, within Atu5044at 45.353 kb on - strand, within Atu5044at 45.353 kb on - strand, within Atu5044at 45.363 kb on + strand, within Atu5044at 45.382 kb on + strandat 45.428 kb on - strandat 45.428 kb on - strandat 45.432 kb on + strandat 45.443 kb on + strandat 45.542 kb on + strand, within Atu5045at 45.542 kb on - strand, within Atu5045at 45.560 kb on - strand, within Atu5045at 46.308 kb on + strandat 46.323 kb on - strandat 46.425 kb on - strandat 46.444 kb on + strandat 46.455 kb on - strandat 46.455 kb on - strandat 46.520 kb on + strandat 46.529 kb on + strandat 46.585 kb on + strandat 46.633 kb on + strand, within Atu5046at 46.729 kb on - strand, within Atu5046at 46.764 kb on + strand, within Atu5046at 46.792 kb on + strand, within Atu5046at 46.800 kb on - strand, within Atu5046at 46.857 kb on - strand, within Atu5046at 46.945 kb on + strand, within Atu5047at 46.953 kb on - strand, within Atu5047at 46.965 kb on - strand, within Atu5047at 46.989 kb on - strand, within Atu5047at 46.993 kb on - strand, within Atu5047at 47.027 kb on + strand, within Atu5047at 47.059 kb on + strand, within Atu5047at 47.125 kb on - strandat 47.157 kb on - strandat 47.157 kb on - strandat 47.170 kb on - strandat 47.188 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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44,588 + Atu5044 0.21 +1.7
44,611 + Atu5044 0.23 -1.9
44,623 - Atu5044 0.24 -0.8
44,624 - Atu5044 0.24 -1.0
44,656 + Atu5044 0.27 -1.2
44,702 + Atu5044 0.31 +0.3
44,711 - Atu5044 0.32 +3.3
44,722 + Atu5044 0.33 +0.9
44,722 + Atu5044 0.33 +0.7
44,730 - Atu5044 0.34 +0.8
44,754 + Atu5044 0.36 +0.7
44,811 - Atu5044 0.41 +0.2
44,815 + Atu5044 0.41 +1.2
44,820 + Atu5044 0.41 +1.7
44,842 - Atu5044 0.43 -0.6
44,872 - Atu5044 0.46 +2.4
44,925 - Atu5044 0.51 +1.2
44,943 - Atu5044 0.52 +0.3
44,976 + Atu5044 0.55 +1.1
45,031 - Atu5044 0.60 +1.3
45,069 + Atu5044 0.64 +2.3
45,072 - Atu5044 0.64 +1.0
45,097 + Atu5044 0.66 -1.5
45,097 + Atu5044 0.66 +1.0
45,105 - Atu5044 0.67 -0.4
45,105 - Atu5044 0.67 +1.7
45,105 - Atu5044 0.67 -0.2
45,114 + Atu5044 0.68 -0.3
45,131 - Atu5044 0.69 -0.9
45,138 - Atu5044 0.70 +1.1
45,142 + Atu5044 0.70 -0.4
45,220 + Atu5044 0.77 +0.2
45,220 + Atu5044 0.77 +1.5
45,228 - Atu5044 0.78 +1.3
45,228 - Atu5044 0.78 +1.4
45,228 - Atu5044 0.78 -0.2
45,256 + Atu5044 0.80 +0.2
45,274 - Atu5044 0.82 +0.3
45,279 + Atu5044 0.82 +0.1
45,284 + Atu5044 0.83 +1.4
45,292 - Atu5044 0.83 -0.8
45,303 + Atu5044 0.84 +0.9
45,303 - Atu5044 0.84 +0.8
45,322 + Atu5044 0.86 +0.6
45,353 - Atu5044 0.89 +0.1
45,353 - Atu5044 0.89 +0.4
45,363 + Atu5044 0.90 -0.2
45,382 + +0.1
45,428 - -0.5
45,428 - +1.9
45,432 + +0.8
45,443 + -0.7
45,542 + Atu5045 0.11 -0.6
45,542 - Atu5045 0.11 -0.9
45,560 - Atu5045 0.13 -0.2
46,308 + +0.3
46,323 - +0.1
46,425 - +1.2
46,444 + +0.5
46,455 - +1.1
46,455 - -0.7
46,520 + +0.5
46,529 + -1.2
46,585 + -1.5
46,633 + Atu5046 0.22 -0.9
46,729 - Atu5046 0.49 -1.7
46,764 + Atu5046 0.59 -0.7
46,792 + Atu5046 0.68 +0.1
46,800 - Atu5046 0.70 -0.2
46,857 - Atu5046 0.86 +0.2
46,945 + Atu5047 0.17 +0.4
46,953 - Atu5047 0.20 +0.9
46,965 - Atu5047 0.25 -0.3
46,989 - Atu5047 0.35 +2.7
46,993 - Atu5047 0.37 +0.6
47,027 + Atu5047 0.51 +0.5
47,059 + Atu5047 0.65 -0.0
47,125 - -0.7
47,157 - +0.2
47,157 - +1.3
47,170 - +0.4
47,188 + +0.1

Or see this region's nucleotide sequence