Strain Fitness in Agrobacterium fabrum C58 around Atu2643

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2642 and Atu2643 are separated by 15 nucleotidesAtu2643 and Atu2644 are separated by 7 nucleotidesAtu2644 and Atu2645 are separated by 12 nucleotides Atu2642: Atu2642 - succinate dehydrogenase iron-sulfur, at 2,627,940 to 2,628,719 Atu2642 Atu2643: Atu2643 - succinate dehydrogenase flavoprotein subunit, at 2,628,735 to 2,630,576 Atu2643 Atu2644: Atu2644 - succinate dehydrogenase hydrophobic membrane anchor, at 2,630,584 to 2,630,964 Atu2644 Atu2645: Atu2645 - succinate dehydrogenase cytochrome B-556 subunit, at 2,630,977 to 2,631,369 Atu2645 Position (kb) 2628 2629 2630 2631Strain fitness (log2 ratio) -2 -1 0 1at 2627.794 kb on - strandat 2627.811 kb on - strandat 2627.811 kb on - strandat 2627.893 kb on + strandat 2628.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,627,794 - -0.3
2,627,811 - -0.1
2,627,811 - +0.3
2,627,893 + +0.7
2,628,723 - -2.4

Or see this region's nucleotide sequence