Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_884

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_883 and PfGW456L13_884 are separated by 69 nucleotidesPfGW456L13_884 and PfGW456L13_885 are separated by 29 nucleotides PfGW456L13_883 - O-antigen acetylase, at 990,720 to 992,762 _883 PfGW456L13_884 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-), at 992,832 to 994,298 _884 PfGW456L13_885 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 994,328 to 995,266 _885 Position (kb) 992 993 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 991.915 kb on - strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.245 kb on + strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.246 kb on - strand, within PfGW456L13_883at 992.247 kb on + strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.248 kb on - strand, within PfGW456L13_883at 992.307 kb on + strand, within PfGW456L13_883at 992.308 kb on - strand, within PfGW456L13_883at 992.308 kb on - strand, within PfGW456L13_883at 992.398 kb on + strand, within PfGW456L13_883at 992.398 kb on + strand, within PfGW456L13_883at 992.399 kb on - strand, within PfGW456L13_883at 992.531 kb on - strand, within PfGW456L13_883at 992.560 kb on + strandat 992.637 kb on + strandat 992.637 kb on + strandat 992.637 kb on + strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.638 kb on - strandat 992.760 kb on + strandat 992.760 kb on + strandat 992.760 kb on + strandat 992.760 kb on + strandat 992.761 kb on - strandat 992.770 kb on + strandat 992.770 kb on + strandat 992.770 kb on + strandat 992.770 kb on + strandat 992.797 kb on + strandat 992.798 kb on - strandat 992.798 kb on - strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.804 kb on + strandat 992.805 kb on - strandat 992.805 kb on - strandat 992.805 kb on - strandat 992.805 kb on - strandat 994.285 kb on + strandat 994.291 kb on + strandat 994.291 kb on + strandat 994.291 kb on + strandat 994.291 kb on + strandat 994.291 kb on + strandat 994.291 kb on + strandat 994.305 kb on + strandat 994.338 kb on + strandat 994.338 kb on + strandat 994.338 kb on + strandat 994.339 kb on - strandat 994.339 kb on - strandat 994.339 kb on - strandat 994.382 kb on + strandat 994.490 kb on + strand, within PfGW456L13_885at 994.490 kb on + strand, within PfGW456L13_885at 994.490 kb on + strand, within PfGW456L13_885at 994.490 kb on + strand, within PfGW456L13_885at 994.491 kb on - strand, within PfGW456L13_885at 994.491 kb on - strand, within PfGW456L13_885at 994.501 kb on - strand, within PfGW456L13_885at 994.677 kb on - strand, within PfGW456L13_885at 994.677 kb on - strand, within PfGW456L13_885at 994.764 kb on + strand, within PfGW456L13_885at 994.764 kb on + strand, within PfGW456L13_885at 994.764 kb on + strand, within PfGW456L13_885at 994.765 kb on - strand, within PfGW456L13_885at 994.872 kb on - strand, within PfGW456L13_885at 994.921 kb on + strand, within PfGW456L13_885at 994.921 kb on + strand, within PfGW456L13_885at 994.922 kb on - strand, within PfGW456L13_885at 994.922 kb on - strand, within PfGW456L13_885at 994.973 kb on + strand, within PfGW456L13_885at 995.004 kb on - strand, within PfGW456L13_885at 995.153 kb on + strand, within PfGW456L13_885at 995.154 kb on - strand, within PfGW456L13_885at 995.154 kb on - strand, within PfGW456L13_885at 995.180 kb on + strandat 995.241 kb on + strandat 995.241 kb on + strandat 995.241 kb on + strandat 995.242 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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991,915 - PfGW456L13_883 0.58 -0.3
992,245 + PfGW456L13_883 0.75 -1.1
992,245 + PfGW456L13_883 0.75 -1.2
992,245 + PfGW456L13_883 0.75 -0.5
992,245 + PfGW456L13_883 0.75 -0.1
992,246 - PfGW456L13_883 0.75 +0.3
992,246 - PfGW456L13_883 0.75 -1.7
992,246 - PfGW456L13_883 0.75 +0.3
992,246 - PfGW456L13_883 0.75 -0.3
992,246 - PfGW456L13_883 0.75 -0.2
992,246 - PfGW456L13_883 0.75 +0.4
992,246 - PfGW456L13_883 0.75 -0.9
992,247 + PfGW456L13_883 0.75 -1.5
992,248 - PfGW456L13_883 0.75 +0.7
992,248 - PfGW456L13_883 0.75 -0.3
992,248 - PfGW456L13_883 0.75 -0.6
992,248 - PfGW456L13_883 0.75 -0.2
992,248 - PfGW456L13_883 0.75 +0.6
992,248 - PfGW456L13_883 0.75 -0.7
992,307 + PfGW456L13_883 0.78 -0.7
992,308 - PfGW456L13_883 0.78 -0.5
992,308 - PfGW456L13_883 0.78 +0.8
992,398 + PfGW456L13_883 0.82 -0.2
992,398 + PfGW456L13_883 0.82 +0.1
992,399 - PfGW456L13_883 0.82 -0.7
992,531 - PfGW456L13_883 0.89 -0.2
992,560 + -0.1
992,637 + -1.6
992,637 + -0.2
992,637 + +1.3
992,638 - +0.5
992,638 - -0.2
992,638 - +0.2
992,638 - -0.7
992,638 - +0.3
992,760 + -0.1
992,760 + -0.0
992,760 + -1.2
992,760 + -0.3
992,761 - +0.0
992,770 + -1.0
992,770 + +0.6
992,770 + -0.2
992,770 + -0.4
992,797 + -0.7
992,798 - +2.1
992,798 - +0.6
992,804 + -1.3
992,804 + -0.6
992,804 + -0.7
992,804 + -0.9
992,804 + +0.1
992,804 + -1.2
992,804 + -0.6
992,804 + -3.0
992,804 + -0.7
992,804 + -0.4
992,804 + -0.6
992,804 + -1.2
992,804 + -1.2
992,804 + +1.9
992,804 + -0.8
992,804 + +0.2
992,804 + -0.7
992,804 + -2.1
992,804 + -1.1
992,805 - +2.8
992,805 - +1.4
992,805 - +1.5
992,805 - -0.9
994,285 + +1.5
994,291 + +0.7
994,291 + +0.1
994,291 + -1.4
994,291 + +0.2
994,291 + -0.0
994,291 + +0.9
994,305 + -0.5
994,338 + -0.2
994,338 + +0.7
994,338 + +1.3
994,339 - +1.5
994,339 - +0.7
994,339 - -0.4
994,382 + +0.6
994,490 + PfGW456L13_885 0.17 -0.9
994,490 + PfGW456L13_885 0.17 -0.1
994,490 + PfGW456L13_885 0.17 +1.0
994,490 + PfGW456L13_885 0.17 -0.8
994,491 - PfGW456L13_885 0.17 +1.1
994,491 - PfGW456L13_885 0.17 +1.8
994,501 - PfGW456L13_885 0.18 -0.0
994,677 - PfGW456L13_885 0.37 +0.8
994,677 - PfGW456L13_885 0.37 +0.1
994,764 + PfGW456L13_885 0.46 +0.7
994,764 + PfGW456L13_885 0.46 -0.8
994,764 + PfGW456L13_885 0.46 +0.2
994,765 - PfGW456L13_885 0.47 +0.7
994,872 - PfGW456L13_885 0.58 +0.3
994,921 + PfGW456L13_885 0.63 +0.3
994,921 + PfGW456L13_885 0.63 +1.4
994,922 - PfGW456L13_885 0.63 +0.2
994,922 - PfGW456L13_885 0.63 +1.7
994,973 + PfGW456L13_885 0.69 +0.5
995,004 - PfGW456L13_885 0.72 -0.3
995,153 + PfGW456L13_885 0.88 +0.7
995,154 - PfGW456L13_885 0.88 +0.6
995,154 - PfGW456L13_885 0.88 +0.5
995,180 + -0.0
995,241 + -0.3
995,241 + +1.2
995,241 + +0.6
995,242 - -0.6

Or see this region's nucleotide sequence