Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_818

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_817 and PfGW456L13_818 are separated by 132 nucleotidesPfGW456L13_818 and PfGW456L13_819 are separated by 57 nucleotides PfGW456L13_817 - Acetyl-CoA hydrolase, at 914,719 to 916,641 _817 PfGW456L13_818 - Xanthine phosphoribosyltransferase (EC 2.4.2.22), at 916,774 to 917,346 _818 PfGW456L13_819 - ATP-dependent DNA helicase Rep, at 917,404 to 919,413 _819 Position (kb) 916 917 918Strain fitness (log2 ratio) -1 0 1at 915.814 kb on + strand, within PfGW456L13_817at 915.814 kb on + strand, within PfGW456L13_817at 915.814 kb on + strand, within PfGW456L13_817at 915.814 kb on + strand, within PfGW456L13_817at 915.814 kb on + strand, within PfGW456L13_817at 915.815 kb on - strand, within PfGW456L13_817at 915.815 kb on - strand, within PfGW456L13_817at 915.815 kb on - strand, within PfGW456L13_817at 915.815 kb on - strand, within PfGW456L13_817at 915.815 kb on - strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.877 kb on + strand, within PfGW456L13_817at 915.878 kb on - strand, within PfGW456L13_817at 915.878 kb on - strand, within PfGW456L13_817at 915.878 kb on - strand, within PfGW456L13_817at 915.878 kb on - strand, within PfGW456L13_817at 916.019 kb on + strand, within PfGW456L13_817at 916.019 kb on + strand, within PfGW456L13_817at 916.020 kb on - strand, within PfGW456L13_817at 916.030 kb on + strand, within PfGW456L13_817at 916.030 kb on + strand, within PfGW456L13_817at 916.030 kb on + strand, within PfGW456L13_817at 916.030 kb on + strand, within PfGW456L13_817at 916.030 kb on + strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.031 kb on - strand, within PfGW456L13_817at 916.138 kb on + strand, within PfGW456L13_817at 916.139 kb on - strand, within PfGW456L13_817at 916.139 kb on - strand, within PfGW456L13_817at 916.139 kb on - strand, within PfGW456L13_817at 916.189 kb on + strand, within PfGW456L13_817at 916.244 kb on + strand, within PfGW456L13_817at 916.244 kb on + strand, within PfGW456L13_817at 916.244 kb on + strand, within PfGW456L13_817at 916.244 kb on + strand, within PfGW456L13_817at 916.244 kb on + strand, within PfGW456L13_817at 916.244 kb on + strand, within PfGW456L13_817at 916.245 kb on - strand, within PfGW456L13_817at 916.245 kb on - strand, within PfGW456L13_817at 916.245 kb on - strand, within PfGW456L13_817at 916.248 kb on + strand, within PfGW456L13_817at 916.248 kb on + strand, within PfGW456L13_817at 916.249 kb on - strand, within PfGW456L13_817at 916.249 kb on - strand, within PfGW456L13_817at 916.338 kb on + strand, within PfGW456L13_817at 916.391 kb on + strand, within PfGW456L13_817at 916.391 kb on + strand, within PfGW456L13_817at 916.391 kb on + strand, within PfGW456L13_817at 916.391 kb on + strand, within PfGW456L13_817at 916.391 kb on + strand, within PfGW456L13_817at 916.391 kb on + strand, within PfGW456L13_817at 916.392 kb on - strand, within PfGW456L13_817at 916.392 kb on - strand, within PfGW456L13_817at 916.392 kb on - strand, within PfGW456L13_817at 916.392 kb on - strand, within PfGW456L13_817at 916.392 kb on - strand, within PfGW456L13_817at 916.392 kb on - strand, within PfGW456L13_817at 916.402 kb on + strand, within PfGW456L13_817at 916.597 kb on + strandat 916.597 kb on + strandat 916.597 kb on + strandat 916.597 kb on + strandat 916.597 kb on + strandat 916.598 kb on - strandat 916.598 kb on - strandat 916.598 kb on - strandat 916.598 kb on - strandat 916.639 kb on + strandat 916.639 kb on + strandat 916.640 kb on - strandat 916.694 kb on + strandat 916.694 kb on + strandat 916.694 kb on + strandat 916.695 kb on - strandat 916.723 kb on + strandat 916.776 kb on - strandat 916.790 kb on - strandat 916.956 kb on + strand, within PfGW456L13_818at 916.957 kb on - strand, within PfGW456L13_818at 917.057 kb on + strand, within PfGW456L13_818at 917.057 kb on + strand, within PfGW456L13_818at 917.057 kb on + strand, within PfGW456L13_818at 917.379 kb on + strandat 917.413 kb on + strandat 917.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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915,814 + PfGW456L13_817 0.57 -0.3
915,814 + PfGW456L13_817 0.57 +0.1
915,814 + PfGW456L13_817 0.57 +0.8
915,814 + PfGW456L13_817 0.57 -1.0
915,814 + PfGW456L13_817 0.57 -0.7
915,815 - PfGW456L13_817 0.57 +1.3
915,815 - PfGW456L13_817 0.57 +0.3
915,815 - PfGW456L13_817 0.57 -0.3
915,815 - PfGW456L13_817 0.57 -0.3
915,815 - PfGW456L13_817 0.57 +0.6
915,877 + PfGW456L13_817 0.60 -0.1
915,877 + PfGW456L13_817 0.60 -0.9
915,877 + PfGW456L13_817 0.60 -0.2
915,877 + PfGW456L13_817 0.60 +0.2
915,877 + PfGW456L13_817 0.60 -0.8
915,877 + PfGW456L13_817 0.60 +0.0
915,877 + PfGW456L13_817 0.60 +0.0
915,877 + PfGW456L13_817 0.60 -0.4
915,877 + PfGW456L13_817 0.60 -0.1
915,877 + PfGW456L13_817 0.60 -0.7
915,878 - PfGW456L13_817 0.60 -0.6
915,878 - PfGW456L13_817 0.60 +0.2
915,878 - PfGW456L13_817 0.60 +1.0
915,878 - PfGW456L13_817 0.60 +1.5
916,019 + PfGW456L13_817 0.68 +0.7
916,019 + PfGW456L13_817 0.68 -0.7
916,020 - PfGW456L13_817 0.68 +1.7
916,030 + PfGW456L13_817 0.68 +0.0
916,030 + PfGW456L13_817 0.68 -0.4
916,030 + PfGW456L13_817 0.68 +0.4
916,030 + PfGW456L13_817 0.68 +0.2
916,030 + PfGW456L13_817 0.68 +0.2
916,031 - PfGW456L13_817 0.68 -0.5
916,031 - PfGW456L13_817 0.68 -0.8
916,031 - PfGW456L13_817 0.68 -1.0
916,031 - PfGW456L13_817 0.68 -0.6
916,031 - PfGW456L13_817 0.68 +0.2
916,031 - PfGW456L13_817 0.68 +0.7
916,031 - PfGW456L13_817 0.68 +0.7
916,031 - PfGW456L13_817 0.68 -0.5
916,031 - PfGW456L13_817 0.68 +0.6
916,138 + PfGW456L13_817 0.74 +0.2
916,139 - PfGW456L13_817 0.74 +0.6
916,139 - PfGW456L13_817 0.74 +0.7
916,139 - PfGW456L13_817 0.74 +0.5
916,189 + PfGW456L13_817 0.76 +0.5
916,244 + PfGW456L13_817 0.79 +0.5
916,244 + PfGW456L13_817 0.79 +0.0
916,244 + PfGW456L13_817 0.79 -0.1
916,244 + PfGW456L13_817 0.79 -0.9
916,244 + PfGW456L13_817 0.79 +0.1
916,244 + PfGW456L13_817 0.79 -0.4
916,245 - PfGW456L13_817 0.79 +0.6
916,245 - PfGW456L13_817 0.79 -1.3
916,245 - PfGW456L13_817 0.79 -0.2
916,248 + PfGW456L13_817 0.80 -0.1
916,248 + PfGW456L13_817 0.80 +0.4
916,249 - PfGW456L13_817 0.80 +1.3
916,249 - PfGW456L13_817 0.80 +1.3
916,338 + PfGW456L13_817 0.84 +0.2
916,391 + PfGW456L13_817 0.87 +0.3
916,391 + PfGW456L13_817 0.87 +0.1
916,391 + PfGW456L13_817 0.87 +0.7
916,391 + PfGW456L13_817 0.87 -0.3
916,391 + PfGW456L13_817 0.87 +0.5
916,391 + PfGW456L13_817 0.87 -1.3
916,392 - PfGW456L13_817 0.87 -0.9
916,392 - PfGW456L13_817 0.87 +0.1
916,392 - PfGW456L13_817 0.87 -0.3
916,392 - PfGW456L13_817 0.87 -0.3
916,392 - PfGW456L13_817 0.87 +0.4
916,392 - PfGW456L13_817 0.87 -1.4
916,402 + PfGW456L13_817 0.88 -0.0
916,597 + -0.8
916,597 + +0.2
916,597 + -0.6
916,597 + -0.9
916,597 + -1.5
916,598 - +0.9
916,598 - -0.8
916,598 - -0.3
916,598 - -1.0
916,639 + +0.2
916,639 + -0.3
916,640 - +0.6
916,694 + -0.1
916,694 + +0.9
916,694 + -0.2
916,695 - +0.5
916,723 + -0.0
916,776 - -0.3
916,790 - +0.3
916,956 + PfGW456L13_818 0.32 -0.1
916,957 - PfGW456L13_818 0.32 -0.5
917,057 + PfGW456L13_818 0.49 -0.2
917,057 + PfGW456L13_818 0.49 -1.7
917,057 + PfGW456L13_818 0.49 -1.0
917,379 + +0.3
917,413 + +0.0
917,414 - +0.9

Or see this region's nucleotide sequence