Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_812

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_810 and PfGW456L13_811 are separated by 152 nucleotidesPfGW456L13_811 and PfGW456L13_812 are separated by 151 nucleotidesPfGW456L13_812 and PfGW456L13_813 overlap by 29 nucleotidesPfGW456L13_813 and PfGW456L13_814 are separated by 99 nucleotides PfGW456L13_810 - FIG00954130: hypothetical protein, at 909,302 to 909,565 _810 PfGW456L13_811 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 909,718 to 910,206 _811 PfGW456L13_812 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 910,358 to 911,668 _812 PfGW456L13_813 - Translation initiation inhibitor, at 911,640 to 911,993 _813 PfGW456L13_814 - Alanine racemase (EC 5.1.1.1), at 912,093 to 913,166 _814 Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1 2at 909.416 kb on + strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.534 kb on - strand, within PfGW456L13_810at 909.534 kb on - strand, within PfGW456L13_810at 909.563 kb on + strandat 909.563 kb on + strandat 909.563 kb on + strandat 909.564 kb on - strandat 909.626 kb on + strandat 909.626 kb on + strandat 909.627 kb on - strandat 909.770 kb on + strand, within PfGW456L13_811at 909.770 kb on + strand, within PfGW456L13_811at 909.866 kb on + strand, within PfGW456L13_811at 909.945 kb on + strand, within PfGW456L13_811at 909.946 kb on - strand, within PfGW456L13_811at 909.959 kb on + strand, within PfGW456L13_811at 909.993 kb on + strand, within PfGW456L13_811at 910.256 kb on + strandat 910.266 kb on + strandat 910.266 kb on + strandat 910.325 kb on - strandat 910.357 kb on + strandat 910.412 kb on + strandat 910.412 kb on + strandat 910.413 kb on - strandat 910.416 kb on - strandat 910.514 kb on + strand, within PfGW456L13_812at 910.619 kb on + strand, within PfGW456L13_812at 910.619 kb on + strand, within PfGW456L13_812at 910.771 kb on + strand, within PfGW456L13_812at 910.876 kb on + strand, within PfGW456L13_812at 911.129 kb on + strand, within PfGW456L13_812at 911.175 kb on - strand, within PfGW456L13_812at 911.256 kb on - strand, within PfGW456L13_812at 911.599 kb on + strandat 911.599 kb on + strandat 911.599 kb on + strandat 911.600 kb on - strandat 911.706 kb on + strand, within PfGW456L13_813at 911.838 kb on + strand, within PfGW456L13_813at 911.838 kb on + strand, within PfGW456L13_813at 911.991 kb on + strandat 911.991 kb on + strandat 911.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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909,416 + PfGW456L13_810 0.43 +0.1
909,417 - PfGW456L13_810 0.44 +1.7
909,417 - PfGW456L13_810 0.44 -0.4
909,417 - PfGW456L13_810 0.44 -0.3
909,417 - PfGW456L13_810 0.44 -0.2
909,417 - PfGW456L13_810 0.44 -0.6
909,533 + PfGW456L13_810 0.88 +0.0
909,533 + PfGW456L13_810 0.88 +0.4
909,533 + PfGW456L13_810 0.88 -0.6
909,533 + PfGW456L13_810 0.88 +0.8
909,533 + PfGW456L13_810 0.88 -0.0
909,534 - PfGW456L13_810 0.88 -0.6
909,534 - PfGW456L13_810 0.88 -1.8
909,563 + +0.6
909,563 + +0.9
909,563 + -0.9
909,564 - +0.4
909,626 + +0.6
909,626 + +0.3
909,627 - +0.2
909,770 + PfGW456L13_811 0.11 -1.0
909,770 + PfGW456L13_811 0.11 -0.1
909,866 + PfGW456L13_811 0.30 -0.0
909,945 + PfGW456L13_811 0.46 +0.2
909,946 - PfGW456L13_811 0.47 +1.4
909,959 + PfGW456L13_811 0.49 +0.6
909,993 + PfGW456L13_811 0.56 +0.2
910,256 + -0.3
910,266 + -0.5
910,266 + -0.8
910,325 - +0.9
910,357 + -1.4
910,412 + +1.8
910,412 + -0.1
910,413 - -0.7
910,416 - +1.1
910,514 + PfGW456L13_812 0.12 -0.3
910,619 + PfGW456L13_812 0.20 -1.1
910,619 + PfGW456L13_812 0.20 +0.6
910,771 + PfGW456L13_812 0.32 -0.5
910,876 + PfGW456L13_812 0.40 +0.7
911,129 + PfGW456L13_812 0.59 -1.5
911,175 - PfGW456L13_812 0.62 -0.1
911,256 - PfGW456L13_812 0.68 -1.3
911,599 + +0.2
911,599 + -0.7
911,599 + +0.3
911,600 - -0.1
911,706 + PfGW456L13_813 0.19 -0.1
911,838 + PfGW456L13_813 0.56 -0.6
911,838 + PfGW456L13_813 0.56 +0.0
911,991 + +0.7
911,991 + +0.6
911,991 + -0.3

Or see this region's nucleotide sequence