Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_793

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_791 and PfGW456L13_792 are separated by 18 nucleotidesPfGW456L13_792 and PfGW456L13_793 are separated by 289 nucleotidesPfGW456L13_793 and PfGW456L13_794 are separated by 17 nucleotides PfGW456L13_791 - hypothetical protein, at 892,994 to 893,566 _791 PfGW456L13_792 - hypothetical protein, at 893,585 to 893,746 _792 PfGW456L13_793 - Acetylglutamate kinase (EC 2.7.2.8), at 894,036 to 894,941 _793 PfGW456L13_794 - Phosphomannomutase (EC 5.4.2.8) / Phosphoglucomutase (EC 5.4.2.2), at 894,959 to 896,356 _794 Position (kb) 894 895Strain fitness (log2 ratio) -3 -2 -1 0 1at 893.169 kb on + strand, within PfGW456L13_791at 893.169 kb on + strand, within PfGW456L13_791at 893.169 kb on + strand, within PfGW456L13_791at 893.170 kb on - strand, within PfGW456L13_791at 893.312 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.362 kb on - strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.453 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.462 kb on + strand, within PfGW456L13_791at 893.463 kb on - strand, within PfGW456L13_791at 893.690 kb on + strand, within PfGW456L13_792at 893.690 kb on + strand, within PfGW456L13_792at 893.690 kb on + strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.796 kb on + strandat 893.796 kb on + strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.849 kb on + strandat 893.849 kb on + strandat 893.849 kb on + strandat 893.849 kb on + strandat 893.850 kb on - strandat 893.850 kb on - strandat 893.878 kb on + strandat 893.878 kb on + strandat 893.878 kb on + strandat 893.879 kb on - strandat 893.879 kb on - strandat 893.895 kb on + strandat 893.895 kb on + strandat 893.896 kb on - strandat 893.917 kb on - strandat 893.945 kb on + strandat 893.987 kb on + strandat 893.988 kb on - strandat 893.988 kb on - strandat 893.995 kb on + strandat 893.996 kb on - strandat 894.021 kb on + strandat 894.196 kb on + strand, within PfGW456L13_793at 894.196 kb on + strand, within PfGW456L13_793at 894.196 kb on + strand, within PfGW456L13_793at 894.197 kb on - strand, within PfGW456L13_793at 894.361 kb on + strand, within PfGW456L13_793at 894.361 kb on + strand, within PfGW456L13_793at 894.457 kb on - strand, within PfGW456L13_793at 894.869 kb on - strandat 894.869 kb on - strandat 894.881 kb on - strandat 894.881 kb on - strandat 894.881 kb on - strandat 894.969 kb on - strandat 895.240 kb on + strand, within PfGW456L13_794at 895.240 kb on + strand, within PfGW456L13_794at 895.241 kb on - strand, within PfGW456L13_794at 895.241 kb on - strand, within PfGW456L13_794at 895.320 kb on + strand, within PfGW456L13_794at 895.320 kb on + strand, within PfGW456L13_794at 895.320 kb on + strand, within PfGW456L13_794at 895.321 kb on - strand, within PfGW456L13_794at 895.321 kb on - strand, within PfGW456L13_794at 895.321 kb on - strand, within PfGW456L13_794at 895.461 kb on + strand, within PfGW456L13_794at 895.461 kb on + strandat 895.461 kb on + strand, within PfGW456L13_794at 895.461 kb on + strand, within PfGW456L13_794at 895.462 kb on - strand, within PfGW456L13_794at 895.875 kb on + strand, within PfGW456L13_794

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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893,169 + PfGW456L13_791 0.31 -0.3
893,169 + PfGW456L13_791 0.31 +0.4
893,169 + PfGW456L13_791 0.31 -0.1
893,170 - PfGW456L13_791 0.31 +0.5
893,312 + PfGW456L13_791 0.55 +0.2
893,346 + PfGW456L13_791 0.61 +0.6
893,346 + PfGW456L13_791 0.61 -0.1
893,346 + PfGW456L13_791 0.61 -0.6
893,347 - PfGW456L13_791 0.62 +1.0
893,347 - PfGW456L13_791 0.62 +0.3
893,347 - PfGW456L13_791 0.62 +0.6
893,347 - PfGW456L13_791 0.62 +0.3
893,347 - PfGW456L13_791 0.62 +0.9
893,347 - PfGW456L13_791 0.62 +0.9
893,361 + PfGW456L13_791 0.64 -1.0
893,361 + PfGW456L13_791 0.64 +1.6
893,361 + PfGW456L13_791 0.64 +0.4
893,361 + PfGW456L13_791 0.64 -1.1
893,362 - PfGW456L13_791 0.64 -0.6
893,430 + PfGW456L13_791 0.76 +0.3
893,430 + PfGW456L13_791 0.76 +0.7
893,430 + PfGW456L13_791 0.76 -0.6
893,430 + PfGW456L13_791 0.76 +0.9
893,431 - PfGW456L13_791 0.76 +0.2
893,431 - PfGW456L13_791 0.76 -0.1
893,431 - PfGW456L13_791 0.76 +0.4
893,453 + PfGW456L13_791 0.80 +0.1
893,455 + PfGW456L13_791 0.80 +1.5
893,455 + PfGW456L13_791 0.80 +0.5
893,455 + PfGW456L13_791 0.80 -1.0
893,455 + PfGW456L13_791 0.80 -0.4
893,455 + PfGW456L13_791 0.80 +0.2
893,455 + PfGW456L13_791 0.80 -0.0
893,455 + PfGW456L13_791 0.80 -0.2
893,455 + PfGW456L13_791 0.80 +0.1
893,455 + PfGW456L13_791 0.80 +1.0
893,455 + PfGW456L13_791 0.80 -1.9
893,455 + PfGW456L13_791 0.80 -0.0
893,455 + PfGW456L13_791 0.80 -0.1
893,455 + PfGW456L13_791 0.80 +0.5
893,456 - PfGW456L13_791 0.81 +0.6
893,456 - PfGW456L13_791 0.81 -0.1
893,456 - PfGW456L13_791 0.81 +0.0
893,456 - PfGW456L13_791 0.81 +0.7
893,456 - PfGW456L13_791 0.81 +0.2
893,456 - PfGW456L13_791 0.81 -0.8
893,456 - PfGW456L13_791 0.81 -0.0
893,456 - PfGW456L13_791 0.81 -0.8
893,456 - PfGW456L13_791 0.81 -1.9
893,456 - PfGW456L13_791 0.81 +0.5
893,456 - PfGW456L13_791 0.81 +0.6
893,456 - PfGW456L13_791 0.81 -0.4
893,462 + PfGW456L13_791 0.82 -1.1
893,463 - PfGW456L13_791 0.82 +0.1
893,690 + PfGW456L13_792 0.65 +0.8
893,690 + PfGW456L13_792 0.65 -0.2
893,690 + PfGW456L13_792 0.65 +0.4
893,691 - PfGW456L13_792 0.65 +1.0
893,691 - PfGW456L13_792 0.65 -0.8
893,691 - PfGW456L13_792 0.65 -1.3
893,691 - PfGW456L13_792 0.65 -0.7
893,691 - PfGW456L13_792 0.65 +0.1
893,691 - PfGW456L13_792 0.65 +1.1
893,786 + -0.9
893,786 + +0.1
893,786 + +0.5
893,786 + -0.0
893,786 + -0.3
893,786 + -0.6
893,796 + +0.7
893,796 + +1.4
893,797 - -0.2
893,797 - -0.7
893,797 - +1.0
893,797 - -1.1
893,797 - -1.2
893,797 - -0.0
893,797 - +0.5
893,797 - +0.8
893,849 + -0.4
893,849 + +0.1
893,849 + -0.1
893,849 + -0.1
893,850 - +0.1
893,850 - +0.5
893,878 + -0.4
893,878 + -0.1
893,878 + +0.3
893,879 - +0.1
893,879 - +1.1
893,895 + -0.1
893,895 + -0.7
893,896 - -0.2
893,917 - +0.5
893,945 + -0.5
893,987 + +0.5
893,988 - -2.9
893,988 - -0.3
893,995 + +0.4
893,996 - +0.8
894,021 + +0.3
894,196 + PfGW456L13_793 0.18 -3.0
894,196 + PfGW456L13_793 0.18 -2.2
894,196 + PfGW456L13_793 0.18 -2.4
894,197 - PfGW456L13_793 0.18 -3.5
894,361 + PfGW456L13_793 0.36 -3.2
894,361 + PfGW456L13_793 0.36 -0.6
894,457 - PfGW456L13_793 0.46 -1.4
894,869 - -1.2
894,869 - -1.1
894,881 - +0.1
894,881 - -2.5
894,881 - -0.7
894,969 - -1.3
895,240 + PfGW456L13_794 0.20 -0.4
895,240 + PfGW456L13_794 0.20 +0.7
895,241 - PfGW456L13_794 0.20 +0.1
895,241 - PfGW456L13_794 0.20 -0.3
895,320 + PfGW456L13_794 0.26 -0.1
895,320 + PfGW456L13_794 0.26 +0.6
895,320 + PfGW456L13_794 0.26 -0.4
895,321 - PfGW456L13_794 0.26 +0.2
895,321 - PfGW456L13_794 0.26 +0.3
895,321 - PfGW456L13_794 0.26 -0.7
895,461 + PfGW456L13_794 0.36 -0.1
895,461 + -1.1
895,461 + PfGW456L13_794 0.36 +0.6
895,461 + PfGW456L13_794 0.36 +0.3
895,462 - PfGW456L13_794 0.36 +0.4
895,875 + PfGW456L13_794 0.66 -0.5

Or see this region's nucleotide sequence