Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_750 and PfGW456L13_751 are separated by 69 nucleotides PfGW456L13_751 and PfGW456L13_752 are separated by 362 nucleotides
PfGW456L13_750 - Aldose 1-epimerase, at 853,242 to 854,141
_750
PfGW456L13_751 - cytosolic long-chain acyl-CoA thioester hydrolase family protein, at 854,211 to 854,615
_751
PfGW456L13_752 - L-Proline/Glycine betaine transporter ProP, at 854,978 to 856,276
_752
Position (kb) 854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 853.222 kb on + strand at 853.223 kb on - strand at 853.223 kb on - strand at 853.244 kb on - strand at 853.244 kb on - strand at 853.244 kb on - strand at 853.277 kb on + strand at 853.498 kb on + strand, within PfGW456L13_750 at 853.498 kb on + strand, within PfGW456L13_750 at 853.498 kb on + strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.499 kb on - strand, within PfGW456L13_750 at 853.520 kb on + strand, within PfGW456L13_750 at 853.560 kb on - strand, within PfGW456L13_750 at 853.576 kb on + strand, within PfGW456L13_750 at 853.577 kb on - strand, within PfGW456L13_750 at 853.577 kb on - strand, within PfGW456L13_750 at 853.577 kb on - strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.633 kb on + strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.634 kb on - strand, within PfGW456L13_750 at 853.680 kb on - strand, within PfGW456L13_750 at 853.774 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.959 kb on + strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 853.960 kb on - strand, within PfGW456L13_750 at 854.029 kb on + strand, within PfGW456L13_750 at 854.029 kb on + strand, within PfGW456L13_750 at 854.029 kb on + strand, within PfGW456L13_750 at 854.065 kb on - strand at 854.065 kb on - strand at 854.065 kb on - strand at 854.115 kb on + strand at 854.116 kb on - strand at 854.173 kb on + strand at 854.200 kb on + strand at 854.201 kb on - strand at 854.286 kb on + strand, within PfGW456L13_751 at 854.286 kb on + strand, within PfGW456L13_751 at 854.291 kb on + strand, within PfGW456L13_751 at 854.375 kb on + strand, within PfGW456L13_751 at 854.376 kb on - strand, within PfGW456L13_751 at 854.377 kb on + strand, within PfGW456L13_751 at 854.377 kb on + strand, within PfGW456L13_751 at 854.378 kb on - strand, within PfGW456L13_751 at 854.566 kb on - strand, within PfGW456L13_751 at 854.566 kb on - strand, within PfGW456L13_751 at 854.610 kb on + strand at 854.610 kb on + strand at 854.611 kb on - strand at 854.611 kb on - strand at 854.611 kb on - strand at 854.650 kb on + strand at 854.650 kb on + strand at 854.651 kb on - strand at 854.651 kb on - strand at 854.651 kb on - strand at 854.651 kb on - strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.698 kb on + strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.699 kb on - strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.701 kb on + strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.702 kb on - strand at 854.756 kb on - strand at 854.756 kb on - strand at 854.756 kb on - strand at 854.814 kb on + strand at 854.814 kb on + strand at 854.814 kb on + strand at 854.814 kb on + strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.815 kb on - strand at 854.816 kb on + strand at 854.817 kb on - strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.879 kb on + strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.880 kb on - strand at 854.960 kb on - strand at 854.961 kb on + strand at 854.961 kb on + strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 854.962 kb on - strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.044 kb on + strand at 855.045 kb on - strand at 855.045 kb on - strand at 855.045 kb on - strand at 855.045 kb on - strand at 855.054 kb on + strand at 855.055 kb on - strand at 855.055 kb on - strand at 855.165 kb on + strand, within PfGW456L13_752 at 855.166 kb on - strand, within PfGW456L13_752 at 855.332 kb on + strand, within PfGW456L13_752 at 855.333 kb on - strand, within PfGW456L13_752 at 855.464 kb on + strand, within PfGW456L13_752 at 855.465 kb on - strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.541 kb on + strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.542 kb on - strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.545 kb on + strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.546 kb on - strand, within PfGW456L13_752 at 855.569 kb on + strand, within PfGW456L13_752 at 855.570 kb on - strand, within PfGW456L13_752
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 853,222 + -1.5 853,223 - -0.1 853,223 - +0.1 853,244 - -0.1 853,244 - -0.8 853,244 - +0.2 853,277 + -0.0 853,498 + PfGW456L13_750 0.28 +0.9 853,498 + PfGW456L13_750 0.28 +0.3 853,498 + PfGW456L13_750 0.28 +0.2 853,499 - PfGW456L13_750 0.29 -0.3 853,499 - PfGW456L13_750 0.29 +0.6 853,499 - PfGW456L13_750 0.29 +0.1 853,499 - PfGW456L13_750 0.29 -0.4 853,499 - PfGW456L13_750 0.29 -0.6 853,499 - PfGW456L13_750 0.29 +0.2 853,499 - PfGW456L13_750 0.29 -0.3 853,499 - PfGW456L13_750 0.29 -1.8 853,520 + PfGW456L13_750 0.31 +0.2 853,560 - PfGW456L13_750 0.35 -1.2 853,576 + PfGW456L13_750 0.37 -0.3 853,577 - PfGW456L13_750 0.37 -1.3 853,577 - PfGW456L13_750 0.37 +0.8 853,577 - PfGW456L13_750 0.37 -0.2 853,633 + PfGW456L13_750 0.43 -0.3 853,633 + PfGW456L13_750 0.43 -0.6 853,633 + PfGW456L13_750 0.43 +0.2 853,633 + PfGW456L13_750 0.43 -1.1 853,634 - PfGW456L13_750 0.44 -0.6 853,634 - PfGW456L13_750 0.44 -0.4 853,634 - PfGW456L13_750 0.44 -0.3 853,634 - PfGW456L13_750 0.44 -0.7 853,680 - PfGW456L13_750 0.49 +0.6 853,774 + PfGW456L13_750 0.59 -0.5 853,959 + PfGW456L13_750 0.80 +0.4 853,959 + PfGW456L13_750 0.80 +0.7 853,959 + PfGW456L13_750 0.80 -0.7 853,959 + PfGW456L13_750 0.80 -0.7 853,959 + PfGW456L13_750 0.80 +2.2 853,959 + PfGW456L13_750 0.80 -0.6 853,959 + PfGW456L13_750 0.80 +0.2 853,959 + PfGW456L13_750 0.80 -0.1 853,959 + PfGW456L13_750 0.80 +0.8 853,959 + PfGW456L13_750 0.80 -0.3 853,959 + PfGW456L13_750 0.80 +0.7 853,959 + PfGW456L13_750 0.80 +0.4 853,959 + PfGW456L13_750 0.80 -0.4 853,959 + PfGW456L13_750 0.80 -2.5 853,959 + PfGW456L13_750 0.80 -0.8 853,960 - PfGW456L13_750 0.80 +0.5 853,960 - PfGW456L13_750 0.80 -1.3 853,960 - PfGW456L13_750 0.80 +1.3 853,960 - PfGW456L13_750 0.80 +0.2 853,960 - PfGW456L13_750 0.80 +0.3 853,960 - PfGW456L13_750 0.80 +0.1 853,960 - PfGW456L13_750 0.80 +2.5 853,960 - PfGW456L13_750 0.80 -0.4 853,960 - PfGW456L13_750 0.80 +0.3 853,960 - PfGW456L13_750 0.80 +0.2 853,960 - PfGW456L13_750 0.80 +1.1 853,960 - PfGW456L13_750 0.80 -0.5 853,960 - PfGW456L13_750 0.80 -0.5 853,960 - PfGW456L13_750 0.80 +1.0 854,029 + PfGW456L13_750 0.87 -1.4 854,029 + PfGW456L13_750 0.87 -1.6 854,029 + PfGW456L13_750 0.87 -0.1 854,065 - +0.9 854,065 - +0.8 854,065 - +0.9 854,115 + +0.9 854,116 - -1.0 854,173 + -0.1 854,200 + +0.1 854,201 - +0.9 854,286 + PfGW456L13_751 0.19 -0.8 854,286 + PfGW456L13_751 0.19 -1.9 854,291 + PfGW456L13_751 0.20 -2.3 854,375 + PfGW456L13_751 0.40 +0.1 854,376 - PfGW456L13_751 0.41 -0.5 854,377 + PfGW456L13_751 0.41 -0.1 854,377 + PfGW456L13_751 0.41 +1.2 854,378 - PfGW456L13_751 0.41 -0.9 854,566 - PfGW456L13_751 0.88 -0.9 854,566 - PfGW456L13_751 0.88 -0.2 854,610 + -0.1 854,610 + -0.8 854,611 - -2.4 854,611 - -1.5 854,611 - -1.1 854,650 + -1.1 854,650 + -1.4 854,651 - -0.3 854,651 - -2.1 854,651 - +0.2 854,651 - +0.6 854,698 + -3.1 854,698 + -0.9 854,698 + +0.6 854,698 + +0.3 854,698 + +0.1 854,698 + -0.7 854,699 - +0.9 854,699 - +0.9 854,699 - -0.1 854,699 - +1.6 854,699 - -0.1 854,699 - +2.1 854,699 - +0.5 854,699 - -0.2 854,699 - +1.3 854,699 - +1.3 854,699 - -0.3 854,701 + -1.2 854,701 + +0.2 854,701 + -0.3 854,701 + +0.5 854,701 + +0.6 854,701 + +0.3 854,701 + -1.4 854,702 - -0.2 854,702 - -1.3 854,702 - +0.6 854,702 - +0.1 854,702 - +1.1 854,702 - -3.2 854,702 - +0.8 854,702 - +0.1 854,756 - +0.9 854,756 - +0.7 854,756 - +0.1 854,814 + +0.1 854,814 + +1.9 854,814 + -0.8 854,814 + +0.4 854,815 - +0.3 854,815 - -0.4 854,815 - -0.7 854,815 - +0.8 854,815 - +1.7 854,816 + -1.5 854,817 - -0.7 854,879 + -0.9 854,879 + -2.8 854,879 + -0.4 854,879 + +0.3 854,879 + +0.7 854,879 + -1.2 854,879 + +0.2 854,879 + -0.5 854,879 + +1.9 854,879 + +0.3 854,879 + -1.1 854,879 + +0.9 854,879 + +0.3 854,880 - +0.9 854,880 - +1.1 854,880 - +0.1 854,880 - +1.9 854,880 - +0.9 854,880 - -1.2 854,880 - +0.7 854,880 - +0.7 854,880 - -1.1 854,880 - +0.2 854,960 - -0.1 854,961 + -0.9 854,961 + -1.1 854,962 - +0.9 854,962 - +1.1 854,962 - +0.2 854,962 - +0.4 854,962 - +0.6 854,962 - -0.1 854,962 - +0.9 854,962 - +0.2 855,044 + -0.4 855,044 + -0.8 855,044 + -2.0 855,045 - +0.3 855,045 - +0.4 855,045 - +1.9 855,045 - +1.0 855,054 + -0.5 855,055 - +0.4 855,055 - -0.3 855,165 + PfGW456L13_752 0.14 -0.0 855,166 - PfGW456L13_752 0.14 +0.8 855,332 + PfGW456L13_752 0.27 +0.6 855,333 - PfGW456L13_752 0.27 +1.0 855,464 + PfGW456L13_752 0.37 +0.5 855,465 - PfGW456L13_752 0.37 +0.2 855,541 + PfGW456L13_752 0.43 -0.2 855,541 + PfGW456L13_752 0.43 -1.7 855,541 + PfGW456L13_752 0.43 -0.2 855,541 + PfGW456L13_752 0.43 +0.2 855,541 + PfGW456L13_752 0.43 +0.7 855,541 + PfGW456L13_752 0.43 -0.7 855,541 + PfGW456L13_752 0.43 +0.3 855,542 - PfGW456L13_752 0.43 +0.7 855,542 - PfGW456L13_752 0.43 +1.6 855,542 - PfGW456L13_752 0.43 -0.2 855,542 - PfGW456L13_752 0.43 +0.2 855,542 - PfGW456L13_752 0.43 +0.0 855,542 - PfGW456L13_752 0.43 +0.8 855,542 - PfGW456L13_752 0.43 +0.6 855,542 - PfGW456L13_752 0.43 -0.2 855,545 + PfGW456L13_752 0.44 -0.5 855,545 + PfGW456L13_752 0.44 +0.4 855,545 + PfGW456L13_752 0.44 -0.2 855,545 + PfGW456L13_752 0.44 +0.7 855,545 + PfGW456L13_752 0.44 -0.3 855,545 + PfGW456L13_752 0.44 +0.3 855,545 + PfGW456L13_752 0.44 -0.1 855,545 + PfGW456L13_752 0.44 -0.7 855,545 + PfGW456L13_752 0.44 -1.0 855,545 + PfGW456L13_752 0.44 -0.7 855,546 - PfGW456L13_752 0.44 +0.8 855,546 - PfGW456L13_752 0.44 +0.5 855,546 - PfGW456L13_752 0.44 +0.1 855,546 - PfGW456L13_752 0.44 -0.9 855,546 - PfGW456L13_752 0.44 +0.3 855,546 - PfGW456L13_752 0.44 +0.5 855,546 - PfGW456L13_752 0.44 +0.7 855,546 - PfGW456L13_752 0.44 +0.6 855,546 - PfGW456L13_752 0.44 +1.0 855,546 - PfGW456L13_752 0.44 +0.7 855,546 - PfGW456L13_752 0.44 +0.3 855,546 - PfGW456L13_752 0.44 +0.4 855,546 - PfGW456L13_752 0.44 +1.2 855,569 + PfGW456L13_752 0.45 +0.1 855,570 - PfGW456L13_752 0.46 -0.3
Or see this region's nucleotide sequence