Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_644

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_643 and PfGW456L13_644 are separated by 108 nucleotidesPfGW456L13_644 and PfGW456L13_645 are separated by 13 nucleotides PfGW456L13_643 - Sulfate permease, at 733,426 to 734,994 _643 PfGW456L13_644 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 735,103 to 735,924 _644 PfGW456L13_645 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 735,938 to 736,852 _645 Position (kb) 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1at 734.126 kb on + strand, within PfGW456L13_643at 734.221 kb on - strand, within PfGW456L13_643at 734.231 kb on + strand, within PfGW456L13_643at 734.326 kb on - strand, within PfGW456L13_643at 734.389 kb on + strand, within PfGW456L13_643at 734.389 kb on + strand, within PfGW456L13_643at 734.390 kb on - strand, within PfGW456L13_643at 734.390 kb on - strand, within PfGW456L13_643at 734.641 kb on + strand, within PfGW456L13_643at 734.642 kb on - strand, within PfGW456L13_643at 734.671 kb on + strand, within PfGW456L13_643at 734.770 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.780 kb on + strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.781 kb on - strand, within PfGW456L13_643at 734.845 kb on + strandat 734.845 kb on + strandat 734.846 kb on - strandat 735.020 kb on + strandat 735.020 kb on + strandat 735.020 kb on + strandat 735.021 kb on - strandat 735.021 kb on - strandat 735.093 kb on + strandat 735.093 kb on + strandat 735.093 kb on + strandat 735.093 kb on + strandat 735.094 kb on - strandat 735.094 kb on - strandat 735.094 kb on - strandat 735.099 kb on + strandat 735.099 kb on + strandat 735.099 kb on + strandat 735.099 kb on + strandat 735.100 kb on - strandat 735.100 kb on - strandat 735.100 kb on - strandat 735.100 kb on - strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.104 kb on + strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.105 kb on - strandat 735.278 kb on + strand, within PfGW456L13_644at 735.278 kb on + strand, within PfGW456L13_644at 735.278 kb on + strand, within PfGW456L13_644at 735.279 kb on - strand, within PfGW456L13_644at 735.279 kb on - strand, within PfGW456L13_644at 735.279 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.291 kb on - strand, within PfGW456L13_644at 735.330 kb on + strand, within PfGW456L13_644at 735.331 kb on - strand, within PfGW456L13_644at 735.404 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.827 kb on + strand, within PfGW456L13_644at 735.828 kb on - strand, within PfGW456L13_644at 735.828 kb on - strand, within PfGW456L13_644at 735.828 kb on - strand, within PfGW456L13_644at 735.908 kb on - strandat 735.914 kb on + strandat 735.914 kb on + strandat 735.914 kb on + strandat 735.914 kb on + strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 735.915 kb on - strandat 736.921 kb on + strandat 736.922 kb on - strandat 736.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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734,126 + PfGW456L13_643 0.45 +0.5
734,221 - PfGW456L13_643 0.51 -0.3
734,231 + PfGW456L13_643 0.51 -0.2
734,326 - PfGW456L13_643 0.57 +0.6
734,389 + PfGW456L13_643 0.61 +1.3
734,389 + PfGW456L13_643 0.61 +0.7
734,390 - PfGW456L13_643 0.61 -1.9
734,390 - PfGW456L13_643 0.61 +0.6
734,641 + PfGW456L13_643 0.77 +0.5
734,642 - PfGW456L13_643 0.78 -0.1
734,671 + PfGW456L13_643 0.79 +0.3
734,770 + PfGW456L13_643 0.86 -0.1
734,780 + PfGW456L13_643 0.86 +0.2
734,780 + PfGW456L13_643 0.86 +0.6
734,780 + PfGW456L13_643 0.86 -0.3
734,780 + PfGW456L13_643 0.86 -0.4
734,780 + PfGW456L13_643 0.86 -0.5
734,780 + PfGW456L13_643 0.86 +0.8
734,781 - PfGW456L13_643 0.86 -0.3
734,781 - PfGW456L13_643 0.86 +0.6
734,781 - PfGW456L13_643 0.86 +0.1
734,781 - PfGW456L13_643 0.86 -0.3
734,845 + -0.3
734,845 + +0.2
734,846 - +0.9
735,020 + -0.7
735,020 + +0.1
735,020 + +0.7
735,021 - -1.4
735,021 - +0.4
735,093 + +0.7
735,093 + +0.3
735,093 + -0.4
735,093 + -0.7
735,094 - -0.1
735,094 - -1.1
735,094 - +0.6
735,099 + -0.9
735,099 + +0.1
735,099 + +0.0
735,099 + +1.2
735,100 - +1.5
735,100 - -0.2
735,100 - +0.3
735,100 - +0.5
735,104 + +0.1
735,104 + +0.3
735,104 + +0.8
735,104 + +0.3
735,104 + -0.7
735,104 + -0.4
735,105 - -0.2
735,105 - -0.9
735,105 - +0.8
735,105 - +1.0
735,105 - +0.9
735,278 + PfGW456L13_644 0.21 -0.0
735,278 + PfGW456L13_644 0.21 -0.9
735,278 + PfGW456L13_644 0.21 -1.6
735,279 - PfGW456L13_644 0.21 -3.7
735,279 - PfGW456L13_644 0.21 -1.4
735,279 - PfGW456L13_644 0.21 -0.7
735,291 - PfGW456L13_644 0.23 -2.0
735,291 - PfGW456L13_644 0.23 -1.5
735,291 - PfGW456L13_644 0.23 -1.6
735,291 - PfGW456L13_644 0.23 -2.8
735,291 - PfGW456L13_644 0.23 -0.4
735,291 - PfGW456L13_644 0.23 -0.8
735,330 + PfGW456L13_644 0.28 -0.7
735,331 - PfGW456L13_644 0.28 -3.2
735,404 + PfGW456L13_644 0.37 -0.5
735,827 + PfGW456L13_644 0.88 -3.3
735,827 + PfGW456L13_644 0.88 -1.1
735,827 + PfGW456L13_644 0.88 -1.4
735,827 + PfGW456L13_644 0.88 -1.4
735,828 - PfGW456L13_644 0.88 -2.0
735,828 - PfGW456L13_644 0.88 -0.3
735,828 - PfGW456L13_644 0.88 -3.3
735,908 - -2.4
735,914 + -1.0
735,914 + -2.0
735,914 + -0.5
735,914 + -3.2
735,915 - -0.2
735,915 - -0.4
735,915 - -0.1
735,915 - +0.6
735,915 - -0.4
735,915 - +0.3
736,921 + -2.1
736,922 - -0.2
736,922 - -0.6

Or see this region's nucleotide sequence