Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_603

Experiment: Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_602 and PfGW456L13_603 overlap by 1 nucleotidesPfGW456L13_603 and PfGW456L13_604 are separated by 60 nucleotides PfGW456L13_602 - Methionine ABC transporter ATP-binding protein, at 695,646 to 696,653 _602 PfGW456L13_603 - Methionine ABC transporter permease protein, at 696,653 to 697,327 _603 PfGW456L13_604 - Methionine ABC transporter substrate-binding protein, at 697,388 to 698,158 _604 Position (kb) 696 697 698Strain fitness (log2 ratio) -2 -1 0 1 2at 695.670 kb on - strandat 695.670 kb on - strandat 695.670 kb on - strandat 695.677 kb on - strandat 695.677 kb on - strandat 695.677 kb on - strandat 695.745 kb on + strandat 695.746 kb on - strandat 696.469 kb on - strand, within PfGW456L13_602at 696.469 kb on - strand, within PfGW456L13_602at 696.513 kb on + strand, within PfGW456L13_602at 696.513 kb on + strand, within PfGW456L13_602at 696.513 kb on + strand, within PfGW456L13_602at 696.514 kb on - strand, within PfGW456L13_602at 696.514 kb on - strand, within PfGW456L13_602at 696.830 kb on + strand, within PfGW456L13_603at 696.830 kb on + strand, within PfGW456L13_603at 696.830 kb on + strand, within PfGW456L13_603at 696.830 kb on + strand, within PfGW456L13_603at 696.831 kb on - strand, within PfGW456L13_603at 696.831 kb on - strand, within PfGW456L13_603at 696.831 kb on - strand, within PfGW456L13_603at 696.964 kb on - strand, within PfGW456L13_603at 697.060 kb on + strand, within PfGW456L13_603at 697.060 kb on + strand, within PfGW456L13_603at 697.061 kb on - strand, within PfGW456L13_603at 697.061 kb on - strand, within PfGW456L13_603at 697.061 kb on - strand, within PfGW456L13_603at 697.061 kb on - strand, within PfGW456L13_603at 697.138 kb on + strand, within PfGW456L13_603at 697.138 kb on + strand, within PfGW456L13_603at 697.138 kb on + strand, within PfGW456L13_603at 697.138 kb on + strand, within PfGW456L13_603at 697.138 kb on + strand, within PfGW456L13_603at 697.139 kb on - strand, within PfGW456L13_603at 697.139 kb on - strand, within PfGW456L13_603at 697.139 kb on - strand, within PfGW456L13_603at 697.139 kb on - strand, within PfGW456L13_603at 697.151 kb on + strand, within PfGW456L13_603at 697.152 kb on - strand, within PfGW456L13_603at 697.266 kb on + strandat 697.267 kb on - strandat 697.278 kb on + strandat 697.279 kb on - strandat 697.325 kb on + strandat 697.325 kb on + strandat 697.325 kb on + strandat 697.325 kb on + strandat 697.326 kb on - strandat 697.326 kb on - strandat 697.326 kb on - strandat 697.382 kb on - strandat 697.382 kb on - strandat 697.382 kb on - strandat 697.382 kb on - strandat 697.382 kb on - strandat 697.382 kb on - strandat 697.382 kb on - strandat 697.382 kb on - strandat 697.399 kb on - strandat 697.542 kb on + strand, within PfGW456L13_604at 697.542 kb on + strand, within PfGW456L13_604at 697.542 kb on + strand, within PfGW456L13_604at 697.543 kb on - strand, within PfGW456L13_604at 697.543 kb on - strand, within PfGW456L13_604at 697.543 kb on - strand, within PfGW456L13_604at 697.546 kb on + strand, within PfGW456L13_604at 697.546 kb on + strand, within PfGW456L13_604at 697.547 kb on - strand, within PfGW456L13_604at 697.553 kb on + strand, within PfGW456L13_604at 697.553 kb on + strand, within PfGW456L13_604at 697.553 kb on + strand, within PfGW456L13_604at 697.553 kb on + strand, within PfGW456L13_604at 697.553 kb on + strand, within PfGW456L13_604at 697.553 kb on + strand, within PfGW456L13_604at 697.553 kb on + strand, within PfGW456L13_604at 697.554 kb on - strand, within PfGW456L13_604at 697.554 kb on - strand, within PfGW456L13_604at 697.554 kb on - strand, within PfGW456L13_604at 697.554 kb on - strand, within PfGW456L13_604at 697.554 kb on - strand, within PfGW456L13_604at 697.619 kb on + strand, within PfGW456L13_604at 697.620 kb on - strand, within PfGW456L13_604at 697.698 kb on - strand, within PfGW456L13_604at 697.698 kb on - strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.709 kb on + strand, within PfGW456L13_604at 697.710 kb on - strand, within PfGW456L13_604at 697.710 kb on - strand, within PfGW456L13_604at 697.710 kb on - strand, within PfGW456L13_604at 697.710 kb on - strand, within PfGW456L13_604at 697.710 kb on - strand, within PfGW456L13_604at 697.710 kb on - strand, within PfGW456L13_604at 697.765 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.955 kb on + strand, within PfGW456L13_604at 697.956 kb on - strand, within PfGW456L13_604at 697.956 kb on - strand, within PfGW456L13_604at 697.956 kb on - strand, within PfGW456L13_604at 697.956 kb on - strand, within PfGW456L13_604at 697.956 kb on - strand, within PfGW456L13_604at 698.021 kb on + strand, within PfGW456L13_604at 698.022 kb on - strand, within PfGW456L13_604at 698.022 kb on - strand, within PfGW456L13_604at 698.022 kb on - strand, within PfGW456L13_604at 698.022 kb on - strand, within PfGW456L13_604at 698.129 kb on + strandat 698.129 kb on + strandat 698.129 kb on + strandat 698.129 kb on + strandat 698.129 kb on + strandat 698.129 kb on + strandat 698.130 kb on - strandat 698.218 kb on + strandat 698.219 kb on - strandat 698.219 kb on - strandat 698.219 kb on - strandat 698.219 kb on - strandat 698.219 kb on - strandat 698.219 kb on - strandat 698.258 kb on + strandat 698.258 kb on + strandat 698.285 kb on - strandat 698.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml
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695,670 - -1.8
695,670 - -0.1
695,670 - -1.0
695,677 - -1.7
695,677 - -1.8
695,677 - +0.6
695,745 + +0.2
695,746 - +0.1
696,469 - PfGW456L13_602 0.82 +0.1
696,469 - PfGW456L13_602 0.82 +0.2
696,513 + PfGW456L13_602 0.86 +0.4
696,513 + PfGW456L13_602 0.86 +0.5
696,513 + PfGW456L13_602 0.86 -2.0
696,514 - PfGW456L13_602 0.86 +1.3
696,514 - PfGW456L13_602 0.86 -0.3
696,830 + PfGW456L13_603 0.26 -0.7
696,830 + PfGW456L13_603 0.26 +0.3
696,830 + PfGW456L13_603 0.26 -0.8
696,830 + PfGW456L13_603 0.26 -0.5
696,831 - PfGW456L13_603 0.26 +0.3
696,831 - PfGW456L13_603 0.26 +0.2
696,831 - PfGW456L13_603 0.26 -1.1
696,964 - PfGW456L13_603 0.46 -1.0
697,060 + PfGW456L13_603 0.60 -1.6
697,060 + PfGW456L13_603 0.60 -0.1
697,061 - PfGW456L13_603 0.60 -0.4
697,061 - PfGW456L13_603 0.60 -0.3
697,061 - PfGW456L13_603 0.60 +0.5
697,061 - PfGW456L13_603 0.60 -0.7
697,138 + PfGW456L13_603 0.72 -0.8
697,138 + PfGW456L13_603 0.72 -0.7
697,138 + PfGW456L13_603 0.72 -2.1
697,138 + PfGW456L13_603 0.72 -0.2
697,138 + PfGW456L13_603 0.72 -1.0
697,139 - PfGW456L13_603 0.72 -0.7
697,139 - PfGW456L13_603 0.72 -0.0
697,139 - PfGW456L13_603 0.72 -1.8
697,139 - PfGW456L13_603 0.72 -0.4
697,151 + PfGW456L13_603 0.74 -0.8
697,152 - PfGW456L13_603 0.74 -1.0
697,266 + -0.2
697,267 - -2.0
697,278 + -0.0
697,279 - -1.3
697,325 + +0.7
697,325 + -0.4
697,325 + +2.1
697,325 + -0.6
697,326 - -1.3
697,326 - +0.0
697,326 - -1.0
697,382 - +0.7
697,382 - -0.8
697,382 - -0.6
697,382 - -0.5
697,382 - +0.8
697,382 - -0.5
697,382 - +0.1
697,382 - +1.0
697,399 - -0.4
697,542 + PfGW456L13_604 0.20 +0.8
697,542 + PfGW456L13_604 0.20 +0.0
697,542 + PfGW456L13_604 0.20 -0.5
697,543 - PfGW456L13_604 0.20 -0.7
697,543 - PfGW456L13_604 0.20 +1.4
697,543 - PfGW456L13_604 0.20 -0.4
697,546 + PfGW456L13_604 0.20 +0.2
697,546 + PfGW456L13_604 0.20 +1.1
697,547 - PfGW456L13_604 0.21 +0.4
697,553 + PfGW456L13_604 0.21 +0.1
697,553 + PfGW456L13_604 0.21 -0.6
697,553 + PfGW456L13_604 0.21 +0.5
697,553 + PfGW456L13_604 0.21 -0.9
697,553 + PfGW456L13_604 0.21 +0.0
697,553 + PfGW456L13_604 0.21 -0.1
697,553 + PfGW456L13_604 0.21 -0.3
697,554 - PfGW456L13_604 0.22 -0.1
697,554 - PfGW456L13_604 0.22 +0.8
697,554 - PfGW456L13_604 0.22 +1.5
697,554 - PfGW456L13_604 0.22 +0.8
697,554 - PfGW456L13_604 0.22 +1.1
697,619 + PfGW456L13_604 0.30 +1.3
697,620 - PfGW456L13_604 0.30 +0.0
697,698 - PfGW456L13_604 0.40 -0.1
697,698 - PfGW456L13_604 0.40 -1.0
697,709 + PfGW456L13_604 0.42 -0.1
697,709 + PfGW456L13_604 0.42 +0.6
697,709 + PfGW456L13_604 0.42 -2.5
697,709 + PfGW456L13_604 0.42 -0.6
697,709 + PfGW456L13_604 0.42 -0.0
697,709 + PfGW456L13_604 0.42 +1.1
697,709 + PfGW456L13_604 0.42 +0.3
697,709 + PfGW456L13_604 0.42 +1.4
697,710 - PfGW456L13_604 0.42 +0.9
697,710 - PfGW456L13_604 0.42 -0.1
697,710 - PfGW456L13_604 0.42 +0.1
697,710 - PfGW456L13_604 0.42 -0.1
697,710 - PfGW456L13_604 0.42 -0.1
697,710 - PfGW456L13_604 0.42 -0.2
697,765 + PfGW456L13_604 0.49 -1.2
697,955 + PfGW456L13_604 0.74 +0.7
697,955 + PfGW456L13_604 0.74 -0.7
697,955 + PfGW456L13_604 0.74 +0.6
697,955 + PfGW456L13_604 0.74 -0.0
697,955 + PfGW456L13_604 0.74 -0.9
697,955 + PfGW456L13_604 0.74 +0.1
697,955 + PfGW456L13_604 0.74 +0.1
697,955 + PfGW456L13_604 0.74 -0.2
697,956 - PfGW456L13_604 0.74 -1.2
697,956 - PfGW456L13_604 0.74 -0.7
697,956 - PfGW456L13_604 0.74 +0.2
697,956 - PfGW456L13_604 0.74 -0.7
697,956 - PfGW456L13_604 0.74 -1.0
698,021 + PfGW456L13_604 0.82 +0.3
698,022 - PfGW456L13_604 0.82 -1.0
698,022 - PfGW456L13_604 0.82 +0.5
698,022 - PfGW456L13_604 0.82 -0.5
698,022 - PfGW456L13_604 0.82 +0.0
698,129 + +0.4
698,129 + +1.0
698,129 + -0.3
698,129 + +0.3
698,129 + +0.0
698,129 + +0.1
698,130 - +0.0
698,218 + -0.0
698,219 - +0.3
698,219 - -0.9
698,219 - +0.0
698,219 - -0.0
698,219 - +0.5
698,219 - +0.2
698,258 + -0.1
698,258 + +0.5
698,285 - -0.8
698,285 - +0.2

Or see this region's nucleotide sequence