Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_593 and PfGW456L13_594 are separated by 501 nucleotides PfGW456L13_594 and PfGW456L13_595 are separated by 74 nucleotides PfGW456L13_595 and PfGW456L13_596 are separated by 60 nucleotides
PfGW456L13_593 - GTP-binding protein EngB, at 686,051 to 686,695
_593
PfGW456L13_594 - DNA polymerase I (EC 2.7.7.7), at 687,197 to 690,001
_594
PfGW456L13_595 - FIG00953549: hypothetical protein, at 690,076 to 690,363
_595
PfGW456L13_596 - Homoserine kinase (EC 2.7.1.39), at 690,424 to 691,374
_596
Position (kb)
687
688
689
690
691 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 686.693 kb on + strand at 686.693 kb on + strand at 686.694 kb on - strand at 686.694 kb on - strand at 686.757 kb on + strand at 686.757 kb on + strand at 686.765 kb on + strand at 686.765 kb on + strand at 686.765 kb on + strand at 686.766 kb on - strand at 686.792 kb on - strand at 686.852 kb on + strand at 686.852 kb on + strand at 686.852 kb on + strand at 686.852 kb on + strand at 686.853 kb on - strand at 686.853 kb on - strand at 686.853 kb on - strand at 686.853 kb on - strand at 686.886 kb on - strand at 686.886 kb on - strand at 686.909 kb on + strand at 686.909 kb on + strand at 686.909 kb on + strand at 686.910 kb on - strand at 686.910 kb on - strand at 686.922 kb on - strand at 686.923 kb on + strand at 686.923 kb on + strand at 686.923 kb on + strand at 686.923 kb on + strand at 686.923 kb on + strand at 686.924 kb on - strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.933 kb on + strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.934 kb on - strand at 686.966 kb on + strand at 686.967 kb on - strand at 686.967 kb on - strand at 686.992 kb on + strand at 686.992 kb on + strand at 686.992 kb on + strand at 686.993 kb on - strand at 686.993 kb on - strand at 686.993 kb on - strand at 686.993 kb on - strand at 686.993 kb on - strand at 687.013 kb on - strand at 687.013 kb on - strand at 687.013 kb on - strand at 687.024 kb on + strand at 687.032 kb on + strand at 687.033 kb on - strand at 687.079 kb on + strand at 687.187 kb on - strand at 687.218 kb on - strand at 687.218 kb on - strand at 687.279 kb on - strand at 687.279 kb on - strand at 688.413 kb on - strand, within PfGW456L13_594 at 688.477 kb on + strand, within PfGW456L13_594 at 688.478 kb on - strand, within PfGW456L13_594 at 688.478 kb on - strand, within PfGW456L13_594 at 688.478 kb on - strand, within PfGW456L13_594 at 688.575 kb on - strand, within PfGW456L13_594 at 688.594 kb on - strand, within PfGW456L13_594 at 688.594 kb on - strand, within PfGW456L13_594 at 688.594 kb on - strand, within PfGW456L13_594 at 688.594 kb on - strand, within PfGW456L13_594 at 688.647 kb on + strand, within PfGW456L13_594 at 688.647 kb on + strand, within PfGW456L13_594 at 688.648 kb on - strand, within PfGW456L13_594 at 688.648 kb on - strand, within PfGW456L13_594 at 690.072 kb on + strand at 690.073 kb on - strand at 690.073 kb on - strand at 690.086 kb on + strand at 690.086 kb on + strand at 690.087 kb on - strand at 690.087 kb on - strand at 690.087 kb on - strand at 690.195 kb on + strand, within PfGW456L13_595 at 690.196 kb on - strand, within PfGW456L13_595 at 690.232 kb on + strand, within PfGW456L13_595 at 690.269 kb on - strand, within PfGW456L13_595 at 690.327 kb on + strand, within PfGW456L13_595 at 690.361 kb on + strand at 690.361 kb on + strand at 690.361 kb on + strand at 690.362 kb on - strand at 690.419 kb on + strand at 690.419 kb on + strand at 690.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 686,693 + -3.0 686,693 + -0.7 686,694 - +1.4 686,694 - -0.4 686,757 + -0.7 686,757 + +0.9 686,765 + +0.4 686,765 + +0.5 686,765 + -0.1 686,766 - +1.0 686,792 - +0.1 686,852 + +1.2 686,852 + +0.3 686,852 + +0.1 686,852 + +0.4 686,853 - +0.6 686,853 - -0.7 686,853 - -0.2 686,853 - -0.6 686,886 - -0.3 686,886 - -0.1 686,909 + -1.2 686,909 + +1.1 686,909 + -0.0 686,910 - +1.0 686,910 - +0.4 686,922 - +0.1 686,923 + -1.6 686,923 + +0.6 686,923 + -0.1 686,923 + -0.3 686,923 + -2.1 686,924 - -0.2 686,933 + -0.1 686,933 + -0.1 686,933 + +0.4 686,933 + +1.5 686,933 + +0.2 686,933 + -0.1 686,933 + +0.5 686,933 + +0.0 686,933 + -0.6 686,933 + -0.1 686,933 + +0.8 686,934 - +0.4 686,934 - -0.6 686,934 - +0.6 686,934 - +0.2 686,934 - -0.3 686,934 - +0.7 686,934 - -0.5 686,934 - -0.2 686,934 - +0.1 686,934 - +0.2 686,934 - +0.4 686,934 - -0.4 686,934 - +1.1 686,966 + -1.0 686,967 - -1.2 686,967 - -1.1 686,992 + -0.3 686,992 + -1.3 686,992 + -0.3 686,993 - -0.2 686,993 - -0.4 686,993 - +0.1 686,993 - -0.4 686,993 - -1.7 687,013 - +0.5 687,013 - -0.7 687,013 - -0.5 687,024 + +0.0 687,032 + -0.6 687,033 - -0.1 687,079 + +0.1 687,187 - -0.3 687,218 - -0.7 687,218 - -1.5 687,279 - -0.5 687,279 - -1.4 688,413 - PfGW456L13_594 0.43 +0.9 688,477 + PfGW456L13_594 0.46 -1.1 688,478 - PfGW456L13_594 0.46 +0.9 688,478 - PfGW456L13_594 0.46 -1.1 688,478 - PfGW456L13_594 0.46 -0.3 688,575 - PfGW456L13_594 0.49 -1.2 688,594 - PfGW456L13_594 0.50 -1.1 688,594 - PfGW456L13_594 0.50 -1.7 688,594 - PfGW456L13_594 0.50 -2.6 688,594 - PfGW456L13_594 0.50 -2.4 688,647 + PfGW456L13_594 0.52 -1.8 688,647 + PfGW456L13_594 0.52 -1.3 688,648 - PfGW456L13_594 0.52 +1.7 688,648 - PfGW456L13_594 0.52 -0.7 690,072 + -2.0 690,073 - -2.4 690,073 - +0.1 690,086 + -1.4 690,086 + +1.1 690,087 - -1.7 690,087 - -0.8 690,087 - -0.2 690,195 + PfGW456L13_595 0.41 +0.2 690,196 - PfGW456L13_595 0.42 -1.6 690,232 + PfGW456L13_595 0.54 -0.8 690,269 - PfGW456L13_595 0.67 -0.2 690,327 + PfGW456L13_595 0.87 +0.4 690,361 + -0.3 690,361 + -0.2 690,361 + -0.6 690,362 - -2.4 690,419 + -1.7 690,419 + -2.4 690,419 + -2.7
Or see this region's nucleotide sequence