Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_578 and PfGW456L13_579 are separated by 54 nucleotides PfGW456L13_579 and PfGW456L13_580 are separated by 105 nucleotides PfGW456L13_580 and PfGW456L13_581 are separated by 328 nucleotides PfGW456L13_581 and PfGW456L13_582 overlap by 23 nucleotides PfGW456L13_582 and PfGW456L13_583 are separated by 71 nucleotides PfGW456L13_583 and PfGW456L13_584 are separated by 437 nucleotides
PfGW456L13_578 - Glutamate-aspartate carrier protein, at 672,348 to 673,679
_578
PfGW456L13_579 - hypothetical protein, at 673,734 to 673,859
_579
PfGW456L13_580 - hypothetical protein, at 673,965 to 674,096
_580
PfGW456L13_581 - hypothetical protein, at 674,425 to 674,538
_581
PfGW456L13_582 - probable exported protein YPO0432, at 674,516 to 674,680
_582
PfGW456L13_583 - FIG00956005: hypothetical protein, at 674,752 to 675,039
_583
PfGW456L13_584 - alginate biosynthesis transcriptional regulatory protein AlgB, at 675,477 to 676,823
_584
Position (kb) 674
675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 673.541 kb on + strand, within PfGW456L13_578 at 673.630 kb on - strand at 673.661 kb on + strand at 673.661 kb on + strand at 673.679 kb on + strand at 673.680 kb on - strand at 673.680 kb on - strand at 673.680 kb on - strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.691 kb on + strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.692 kb on - strand at 673.767 kb on - strand, within PfGW456L13_579 at 673.767 kb on - strand, within PfGW456L13_579 at 673.767 kb on - strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.768 kb on + strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.769 kb on - strand, within PfGW456L13_579 at 673.825 kb on - strand, within PfGW456L13_579 at 673.825 kb on - strand, within PfGW456L13_579 at 673.849 kb on + strand at 673.850 kb on - strand at 673.865 kb on + strand at 673.865 kb on + strand at 673.926 kb on + strand at 673.926 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.945 kb on + strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.946 kb on - strand at 673.982 kb on + strand, within PfGW456L13_580 at 674.075 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.077 kb on + strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.078 kb on - strand, within PfGW456L13_580 at 674.118 kb on + strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.168 kb on - strand at 674.269 kb on + strand at 674.269 kb on + strand at 674.269 kb on + strand at 674.270 kb on - strand at 674.270 kb on - strand at 674.270 kb on - strand at 674.270 kb on - strand at 674.284 kb on + strand at 674.284 kb on + strand at 674.284 kb on + strand at 674.285 kb on - strand at 674.285 kb on - strand at 674.285 kb on - strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.361 kb on + strand at 674.362 kb on - strand at 674.388 kb on + strand at 674.402 kb on + strand at 674.403 kb on - strand at 674.514 kb on + strand, within PfGW456L13_581 at 674.515 kb on - strand, within PfGW456L13_581 at 674.615 kb on - strand, within PfGW456L13_582 at 674.630 kb on + strand, within PfGW456L13_582 at 674.693 kb on + strand at 674.693 kb on + strand at 674.754 kb on - strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.779 kb on + strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 674.780 kb on - strand at 675.300 kb on - strand at 675.300 kb on - strand at 675.335 kb on + strand at 675.335 kb on + strand at 675.335 kb on + strand at 675.336 kb on - strand at 675.336 kb on - strand at 675.336 kb on - strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.365 kb on + strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.381 kb on + strand at 675.381 kb on + strand at 675.382 kb on - strand at 675.382 kb on - strand at 675.443 kb on + strand at 675.443 kb on + strand at 675.444 kb on - strand at 675.448 kb on - strand at 675.461 kb on + strand at 675.462 kb on - strand at 675.470 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.542 kb on + strand at 675.543 kb on - strand at 675.573 kb on + strand at 675.573 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 673,541 + PfGW456L13_578 0.90 -0.7 673,630 - -0.4 673,661 + +1.1 673,661 + +0.0 673,679 + -0.0 673,680 - -0.0 673,680 - -1.2 673,680 - +0.8 673,691 + -1.1 673,691 + +0.4 673,691 + +1.8 673,691 + +0.7 673,691 + +0.5 673,691 + +1.2 673,691 + +1.9 673,691 + +0.8 673,691 + -1.7 673,691 + +1.3 673,691 + +0.2 673,691 + -1.3 673,692 - +0.8 673,692 - +0.1 673,692 - +0.6 673,692 - -0.1 673,692 - +0.5 673,692 - -0.6 673,692 - +0.7 673,692 - +0.1 673,692 - +0.4 673,692 - +0.7 673,767 - PfGW456L13_579 0.26 +0.4 673,767 - PfGW456L13_579 0.26 +0.2 673,767 - PfGW456L13_579 0.26 +0.1 673,768 + PfGW456L13_579 0.27 -0.7 673,768 + PfGW456L13_579 0.27 -0.7 673,768 + PfGW456L13_579 0.27 -0.1 673,768 + PfGW456L13_579 0.27 -0.2 673,768 + PfGW456L13_579 0.27 +0.5 673,768 + PfGW456L13_579 0.27 +0.1 673,769 - PfGW456L13_579 0.28 -0.8 673,769 - PfGW456L13_579 0.28 -0.2 673,769 - PfGW456L13_579 0.28 +0.8 673,769 - PfGW456L13_579 0.28 +0.6 673,769 - PfGW456L13_579 0.28 +0.5 673,769 - PfGW456L13_579 0.28 +0.2 673,769 - PfGW456L13_579 0.28 -0.2 673,769 - PfGW456L13_579 0.28 +0.1 673,769 - PfGW456L13_579 0.28 +0.6 673,825 - PfGW456L13_579 0.72 +1.7 673,825 - PfGW456L13_579 0.72 +0.5 673,849 + -0.1 673,850 - +0.1 673,865 + +1.0 673,865 + -0.7 673,926 + -0.7 673,926 + +0.9 673,945 + -0.3 673,945 + +0.1 673,945 + -0.7 673,945 + +0.9 673,945 + +0.9 673,945 + +2.1 673,945 + -0.4 673,946 - +0.3 673,946 - +0.6 673,946 - -0.3 673,946 - +0.4 673,946 - +0.1 673,946 - +0.1 673,946 - -0.3 673,982 + PfGW456L13_580 0.13 -0.0 674,075 + PfGW456L13_580 0.83 +0.5 674,077 + PfGW456L13_580 0.85 -0.2 674,077 + PfGW456L13_580 0.85 +0.9 674,077 + PfGW456L13_580 0.85 +0.8 674,077 + PfGW456L13_580 0.85 -0.2 674,077 + PfGW456L13_580 0.85 -0.1 674,077 + PfGW456L13_580 0.85 -0.2 674,077 + PfGW456L13_580 0.85 -0.2 674,077 + PfGW456L13_580 0.85 +1.3 674,077 + PfGW456L13_580 0.85 -0.1 674,077 + PfGW456L13_580 0.85 -0.1 674,078 - PfGW456L13_580 0.86 -1.4 674,078 - PfGW456L13_580 0.86 -0.2 674,078 - PfGW456L13_580 0.86 +0.8 674,078 - PfGW456L13_580 0.86 +0.3 674,078 - PfGW456L13_580 0.86 -0.4 674,078 - PfGW456L13_580 0.86 -1.1 674,078 - PfGW456L13_580 0.86 +0.0 674,078 - PfGW456L13_580 0.86 +2.0 674,118 + -0.5 674,118 + +0.3 674,118 + +0.6 674,119 - -1.4 674,119 - -0.2 674,119 - -1.0 674,119 - -0.9 674,119 - +1.2 674,168 - +0.3 674,269 + -0.2 674,269 + -0.2 674,269 + -0.5 674,270 - -0.1 674,270 - +0.0 674,270 - +0.3 674,270 - -0.9 674,284 + +0.1 674,284 + -1.4 674,284 + -0.2 674,285 - -0.7 674,285 - +0.2 674,285 - +0.5 674,361 + +0.2 674,361 + -0.7 674,361 + +0.1 674,361 + +0.2 674,361 + +0.8 674,362 - -1.1 674,388 + +0.1 674,402 + +0.1 674,403 - +0.2 674,514 + PfGW456L13_581 0.78 +0.5 674,515 - PfGW456L13_581 0.79 +0.0 674,615 - PfGW456L13_582 0.60 -0.9 674,630 + PfGW456L13_582 0.69 -0.6 674,693 + -0.6 674,693 + -0.7 674,754 - -0.1 674,779 + -0.1 674,779 + -0.5 674,779 + -0.1 674,779 + +0.3 674,779 + +0.3 674,779 + +0.5 674,779 + -0.3 674,779 + +0.7 674,780 - +0.5 674,780 - +0.8 674,780 - -0.4 674,780 - +1.7 674,780 - +1.3 674,780 - +0.1 674,780 - +0.3 674,780 - -1.7 674,780 - +0.1 674,780 - +0.4 675,300 - -0.7 675,300 - -0.0 675,335 + -0.7 675,335 + -1.4 675,335 + -0.4 675,336 - -0.9 675,336 - +0.4 675,336 - -0.2 675,365 + -3.4 675,365 + -0.1 675,365 + -0.4 675,365 + -0.4 675,365 + -1.4 675,366 - +0.4 675,366 - +1.0 675,366 - +0.9 675,366 - -1.1 675,366 - +0.0 675,366 - +0.8 675,366 - +0.2 675,366 - -0.2 675,381 + +0.7 675,381 + +0.3 675,382 - +0.3 675,382 - +0.4 675,443 + +0.8 675,443 + +0.0 675,444 - +1.0 675,448 - +0.9 675,461 + -0.1 675,462 - -0.2 675,470 + -0.5 675,542 + -0.5 675,542 + -0.4 675,542 + -1.2 675,542 + +0.1 675,543 - +1.3 675,573 + +0.1 675,573 + -0.7
Or see this region's nucleotide sequence