Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5082 and PfGW456L13_5083 are separated by 131 nucleotides PfGW456L13_5083 and PfGW456L13_5241 are separated by 334 nucleotides PfGW456L13_5241 and PfGW456L13_5084 are separated by 139 nucleotides
PfGW456L13_5082 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 5,669,304 to 5,670,152
_5082
PfGW456L13_5083 - FIG00957702: hypothetical protein, at 5,670,284 to 5,670,589
_5083
PfGW456L13_5241 - tRNA-Thr-CGT, at 5,670,924 to 5,670,996
_5241
PfGW456L13_5084 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 5,671,136 to 5,673,241
_5084
Position (kb) 5670
5671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.050 kb on + strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.051 kb on - strand, within PfGW456L13_5082 at 5670.084 kb on + strand at 5670.084 kb on + strand at 5670.084 kb on + strand at 5670.085 kb on - strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.160 kb on + strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.161 kb on - strand at 5670.180 kb on + strand at 5670.180 kb on + strand at 5670.180 kb on + strand at 5670.203 kb on + strand at 5670.203 kb on + strand at 5670.204 kb on - strand at 5670.230 kb on - strand at 5670.230 kb on - strand at 5670.230 kb on - strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.274 kb on + strand at 5670.275 kb on - strand at 5670.275 kb on - strand at 5670.275 kb on - strand at 5670.275 kb on - strand at 5670.312 kb on + strand at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.399 kb on + strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.400 kb on - strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on + strand, within PfGW456L13_5083 at 5670.534 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.535 kb on - strand, within PfGW456L13_5083 at 5670.674 kb on + strand at 5670.674 kb on + strand at 5670.674 kb on + strand at 5670.674 kb on + strand at 5670.675 kb on - strand at 5670.676 kb on + strand at 5670.676 kb on + strand at 5670.676 kb on + strand at 5670.676 kb on + strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.677 kb on - strand at 5670.742 kb on - strand at 5670.742 kb on - strand at 5670.743 kb on + strand at 5670.743 kb on + strand at 5670.743 kb on + strand at 5670.743 kb on + strand at 5670.764 kb on + strand at 5670.765 kb on - strand at 5670.765 kb on - strand at 5670.765 kb on - strand at 5670.776 kb on + strand at 5670.776 kb on + strand at 5670.776 kb on + strand at 5670.776 kb on + strand at 5670.777 kb on - strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.829 kb on + strand at 5670.830 kb on - strand at 5670.830 kb on - strand at 5670.976 kb on + strand, within PfGW456L13_5241 at 5670.988 kb on + strand, within PfGW456L13_5241 at 5670.989 kb on - strand at 5671.010 kb on + strand at 5671.010 kb on + strand at 5671.011 kb on - strand at 5671.011 kb on - strand at 5671.058 kb on + strand at 5671.058 kb on + strand at 5671.059 kb on - strand at 5671.059 kb on - strand at 5671.059 kb on - strand at 5671.106 kb on - strand at 5671.365 kb on + strand, within PfGW456L13_5084 at 5671.365 kb on + strand, within PfGW456L13_5084 at 5671.366 kb on - strand, within PfGW456L13_5084
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 5,670,050 + PfGW456L13_5082 0.88 -1.1 5,670,050 + PfGW456L13_5082 0.88 -1.7 5,670,050 + PfGW456L13_5082 0.88 -0.4 5,670,050 + PfGW456L13_5082 0.88 -1.4 5,670,050 + PfGW456L13_5082 0.88 -0.6 5,670,050 + PfGW456L13_5082 0.88 +0.2 5,670,051 - PfGW456L13_5082 0.88 -2.9 5,670,051 - PfGW456L13_5082 0.88 +0.8 5,670,051 - PfGW456L13_5082 0.88 -0.7 5,670,051 - PfGW456L13_5082 0.88 -0.2 5,670,051 - PfGW456L13_5082 0.88 -1.4 5,670,051 - PfGW456L13_5082 0.88 -1.1 5,670,051 - PfGW456L13_5082 0.88 +0.8 5,670,084 + +0.2 5,670,084 + -0.2 5,670,084 + -0.1 5,670,085 - -1.8 5,670,160 + -0.6 5,670,160 + +0.6 5,670,160 + +1.1 5,670,160 + +1.7 5,670,160 + +0.1 5,670,160 + +0.3 5,670,160 + -0.4 5,670,160 + +0.2 5,670,160 + -0.4 5,670,160 + -0.3 5,670,160 + -0.3 5,670,160 + +0.4 5,670,160 + -0.5 5,670,160 + -0.5 5,670,161 - -0.4 5,670,161 - -0.9 5,670,161 - +0.4 5,670,161 - +1.5 5,670,161 - +0.4 5,670,161 - +1.1 5,670,161 - -0.4 5,670,161 - -0.1 5,670,161 - -0.5 5,670,161 - +1.1 5,670,180 + +0.0 5,670,180 + +0.3 5,670,180 + +0.9 5,670,203 + -2.4 5,670,203 + -0.3 5,670,204 - +1.1 5,670,230 - -0.9 5,670,230 - +0.4 5,670,230 - +0.5 5,670,274 + -1.2 5,670,274 + +1.2 5,670,274 + +0.1 5,670,274 + +0.1 5,670,274 + +0.1 5,670,274 + -0.7 5,670,274 + -0.5 5,670,274 + +0.8 5,670,275 - +0.1 5,670,275 - +0.6 5,670,275 - -1.0 5,670,275 - -0.2 5,670,312 + +1.2 5,670,399 + PfGW456L13_5083 0.38 -0.5 5,670,399 + PfGW456L13_5083 0.38 -0.4 5,670,399 + PfGW456L13_5083 0.38 -1.4 5,670,399 + PfGW456L13_5083 0.38 +0.5 5,670,399 + PfGW456L13_5083 0.38 -1.5 5,670,399 + PfGW456L13_5083 0.38 +0.8 5,670,400 - PfGW456L13_5083 0.38 -0.4 5,670,400 - PfGW456L13_5083 0.38 -0.4 5,670,400 - PfGW456L13_5083 0.38 -0.5 5,670,400 - PfGW456L13_5083 0.38 -0.3 5,670,400 - PfGW456L13_5083 0.38 +1.2 5,670,400 - PfGW456L13_5083 0.38 -0.8 5,670,400 - PfGW456L13_5083 0.38 +0.2 5,670,534 + PfGW456L13_5083 0.82 +0.0 5,670,534 + PfGW456L13_5083 0.82 +0.1 5,670,534 + PfGW456L13_5083 0.82 +0.1 5,670,534 + PfGW456L13_5083 0.82 +0.5 5,670,534 + PfGW456L13_5083 0.82 -1.0 5,670,534 + PfGW456L13_5083 0.82 +0.3 5,670,534 + PfGW456L13_5083 0.82 +1.5 5,670,534 + PfGW456L13_5083 0.82 +0.9 5,670,534 + PfGW456L13_5083 0.82 -0.3 5,670,534 + PfGW456L13_5083 0.82 -1.7 5,670,534 + PfGW456L13_5083 0.82 +0.4 5,670,534 - PfGW456L13_5083 0.82 +0.3 5,670,535 - PfGW456L13_5083 0.82 +0.8 5,670,535 - PfGW456L13_5083 0.82 +0.7 5,670,535 - PfGW456L13_5083 0.82 +0.6 5,670,535 - PfGW456L13_5083 0.82 -0.4 5,670,535 - PfGW456L13_5083 0.82 -0.8 5,670,535 - PfGW456L13_5083 0.82 -0.4 5,670,535 - PfGW456L13_5083 0.82 +0.2 5,670,535 - PfGW456L13_5083 0.82 -0.8 5,670,674 + -1.2 5,670,674 + +0.4 5,670,674 + +1.3 5,670,674 + +0.2 5,670,675 - -0.4 5,670,676 + +0.5 5,670,676 + +0.8 5,670,676 + +0.8 5,670,676 + +0.8 5,670,677 - -0.2 5,670,677 - -0.6 5,670,677 - -0.7 5,670,677 - -0.1 5,670,677 - +0.2 5,670,742 - +0.6 5,670,742 - +0.7 5,670,743 + +1.9 5,670,743 + -0.1 5,670,743 + -1.2 5,670,743 + -0.5 5,670,764 + +0.2 5,670,765 - +4.4 5,670,765 - -1.7 5,670,765 - +0.7 5,670,776 + -1.7 5,670,776 + -0.9 5,670,776 + +0.7 5,670,776 + +0.0 5,670,777 - -0.2 5,670,829 + +0.3 5,670,829 + +0.3 5,670,829 + -0.4 5,670,829 + +0.4 5,670,829 + -0.8 5,670,830 - +0.4 5,670,830 - -0.4 5,670,976 + PfGW456L13_5241 0.71 -1.5 5,670,988 + PfGW456L13_5241 0.88 +0.8 5,670,989 - +0.0 5,671,010 + +2.2 5,671,010 + +0.3 5,671,011 - +0.1 5,671,011 - -0.6 5,671,058 + +0.2 5,671,058 + -1.1 5,671,059 - -0.3 5,671,059 - +0.4 5,671,059 - +0.3 5,671,106 - -0.2 5,671,365 + PfGW456L13_5084 0.11 -1.0 5,671,365 + PfGW456L13_5084 0.11 -2.4 5,671,366 - PfGW456L13_5084 0.11 -1.7
Or see this region's nucleotide sequence