Experiment: Vancomycin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5084 and PfGW456L13_5085 are separated by 206 nucleotides PfGW456L13_5085 and PfGW456L13_5086 are separated by 117 nucleotides PfGW456L13_5086 and PfGW456L13_5087 are separated by 3 nucleotides PfGW456L13_5087 and PfGW456L13_5088 are separated by 159 nucleotides
PfGW456L13_5084 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 5,671,136 to 5,673,241
_5084
PfGW456L13_5085 - SSU ribosomal protein S15p (S13e), at 5,673,448 to 5,673,717
_5085
PfGW456L13_5086 - tRNA pseudouridine synthase B (EC 4.2.1.70), at 5,673,835 to 5,674,752
_5086
PfGW456L13_5087 - Ribosome-binding factor A, at 5,674,756 to 5,675,157
_5087
PfGW456L13_5088 - Translation initiation factor 2, at 5,675,317 to 5,677,842
_5088
Position (kb)
5673
5674
5675 Strain fitness (log2 ratio)
-2
-1
0
1 at 5673.338 kb on - strand at 5673.346 kb on - strand at 5673.346 kb on - strand at 5673.984 kb on - strand, within PfGW456L13_5086 at 5674.088 kb on - strand, within PfGW456L13_5086 at 5674.167 kb on - strand, within PfGW456L13_5086 at 5674.218 kb on - strand, within PfGW456L13_5086 at 5674.218 kb on - strand, within PfGW456L13_5086 at 5674.255 kb on - strand, within PfGW456L13_5086 at 5674.318 kb on + strand, within PfGW456L13_5086 at 5674.343 kb on + strand, within PfGW456L13_5086 at 5674.343 kb on + strand, within PfGW456L13_5086 at 5674.343 kb on + strand, within PfGW456L13_5086 at 5674.343 kb on + strand, within PfGW456L13_5086 at 5674.343 kb on + strand, within PfGW456L13_5086 at 5674.343 kb on + strand, within PfGW456L13_5086 at 5674.344 kb on - strand, within PfGW456L13_5086
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.125 mg/ml remove 5,673,338 - +0.4 5,673,346 - -0.5 5,673,346 - -1.5 5,673,984 - PfGW456L13_5086 0.16 -1.5 5,674,088 - PfGW456L13_5086 0.28 -0.8 5,674,167 - PfGW456L13_5086 0.36 -0.5 5,674,218 - PfGW456L13_5086 0.42 -2.7 5,674,218 - PfGW456L13_5086 0.42 -1.7 5,674,255 - PfGW456L13_5086 0.46 -2.7 5,674,318 + PfGW456L13_5086 0.53 -2.2 5,674,343 + PfGW456L13_5086 0.55 -0.9 5,674,343 + PfGW456L13_5086 0.55 -0.8 5,674,343 + PfGW456L13_5086 0.55 +1.4 5,674,343 + PfGW456L13_5086 0.55 -1.0 5,674,343 + PfGW456L13_5086 0.55 -1.5 5,674,343 + PfGW456L13_5086 0.55 -0.8 5,674,344 - PfGW456L13_5086 0.55 -0.6
Or see this region's nucleotide sequence